Wall clock time and date at job start Tue Mar 31 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29386 * 124.70044 * 2 1 4 4 C 1.30940 * 117.46530 * 180.02562 * 3 2 1 5 5 C 1.36779 * 113.92271 * 359.97438 * 4 3 2 6 6 C 1.46565 * 126.17643 * 180.02562 * 5 4 3 7 7 O 1.21720 * 120.00131 * 6.68432 * 6 5 4 8 8 N 1.34779 * 119.99819 * 186.69153 * 6 5 4 9 9 C 1.36889 * 119.99947 * 185.09687 * 8 6 5 10 10 H 1.08000 * 119.99778 * 135.60341 * 9 8 6 11 11 C 1.39004 * 119.99922 * 315.59851 * 9 8 6 12 12 N 1.31396 * 120.00215 * 341.10205 * 11 9 8 13 13 Si 1.86797 * 120.00036 * 161.10669 * 11 9 8 14 14 H 1.48497 * 109.47285 * 59.99582 * 13 11 9 15 15 H 1.48497 * 109.47282 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47143 * 299.99648 * 13 11 9 17 17 C 1.46508 * 119.99995 * 5.09270 * 8 6 5 18 18 C 1.54265 * 110.03066 * 183.09483 * 17 8 6 19 19 C 1.54964 * 104.15500 * 217.13657 * 18 17 8 20 20 C 1.54890 * 102.78066 * 37.88875 * 19 18 17 21 21 C 1.53872 * 110.03065 * 65.87319 * 17 8 6 22 22 S 1.70928 * 124.70640 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47201 * 89.97837 * 1 2 3 24 24 H 1.08997 * 109.46570 * 209.97696 * 1 2 3 25 25 H 1.08996 * 109.47469 * 329.97379 * 1 2 3 26 26 H 1.08000 * 123.03600 * 179.73021 * 4 3 2 27 27 H 0.96999 * 120.00223 * 185.04296 * 12 11 9 28 28 H 1.09001 * 110.01439 * 304.48266 * 17 8 6 29 29 H 1.09001 * 110.48328 * 335.78158 * 18 17 8 30 30 H 1.08996 * 110.48576 * 98.42805 * 18 17 8 31 31 H 1.08994 * 110.72264 * 279.57208 * 19 18 17 32 32 H 1.09004 * 110.92021 * 156.29464 * 19 18 17 33 33 H 1.09003 * 110.48313 * 203.40550 * 20 19 18 34 34 H 1.08996 * 110.60135 * 80.81470 * 20 19 18 35 35 H 1.08998 * 110.03343 * 238.56982 * 21 17 8 36 36 H 1.09000 * 110.03644 * 359.95570 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0637 0.0000 4 6 3.5425 0.8988 -0.0005 5 6 3.9353 -0.4114 -0.0004 6 6 5.3170 -0.9003 -0.0004 7 8 6.2400 -0.1164 0.1223 8 7 5.5655 -2.2180 -0.1363 9 6 6.8472 -2.6871 -0.0320 10 1 7.0514 -3.5764 0.5459 11 6 7.8859 -2.0190 -0.6699 12 7 7.6261 -1.1856 -1.6519 13 14 9.6513 -2.3061 -0.1311 14 1 9.9924 -3.7418 -0.2975 15 1 10.5633 -1.4814 -0.9638 16 1 9.8018 -1.9238 1.2959 17 6 4.4637 -3.1483 -0.3957 18 6 4.9930 -4.5969 -0.4329 19 6 4.1601 -5.2761 -1.5493 20 6 4.0297 -4.1547 -2.6098 21 6 3.8512 -2.8672 -1.7790 22 16 2.4802 -1.4052 -0.0006 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3632 -0.8902 0.5135 25 1 -0.3634 0.8897 0.5142 26 1 4.2407 1.7229 -0.0048 27 1 8.3535 -0.7754 -2.1452 28 1 3.7017 -3.0489 0.3773 29 1 6.0529 -4.6093 -0.6867 30 1 4.8231 -5.0897 0.5244 31 1 3.1795 -5.5693 -1.1746 32 1 4.6883 -6.1366 -1.9600 33 1 3.1573 -4.3258 -3.2405 34 1 4.9327 -4.0945 -3.2173 35 1 2.7917 -2.6323 -1.6774 36 1 4.3730 -2.0382 -2.2570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172454271.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:41 Heat of formation + Delta-G solvation = 2.395768 kcal Electronic energy + Delta-G solvation = -20610.012539 eV Core-core repulsion = 17606.680472 eV Total energy + Delta-G solvation = -3003.332066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98299 -40.28635 -38.26393 -35.33747 -33.79182 -32.81828 -30.18489 -29.20469 -28.55494 -26.73824 -24.97433 -23.00744 -21.51850 -21.31467 -19.93667 -19.22495 -18.25509 -17.69132 -17.05432 -16.49565 -16.02178 -15.96965 -15.55058 -15.35570 -14.89297 -14.47221 -14.24555 -14.04979 -13.53936 -13.29199 -13.10111 -12.91773 -12.85432 -12.75709 -12.34501 -12.29311 -12.12877 -12.02895 -11.77347 -11.65174 -11.32564 -10.86814 -10.39812 -10.28203 -10.05337 -9.51756 -9.16196 -8.23230 -5.99681 -0.54534 0.36135 0.77646 1.36967 1.46364 1.49383 1.67519 2.27434 2.68820 3.00603 3.19143 3.31110 3.71881 3.83522 4.03651 4.16117 4.21194 4.43202 4.52610 4.62213 4.65917 4.69555 4.74369 4.75462 4.94107 5.01617 5.05645 5.15838 5.27073 5.29567 5.40995 5.42798 5.50585 5.68545 6.16396 6.75355 6.93894 7.10759 7.55424 8.20897 8.84834 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.007901 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.500063 B = 3542.943950 C = 4631.399435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 N -0.504 5.504 4 C 0.074 3.926 5 C -0.293 4.293 6 C 0.522 3.478 7 O -0.579 6.579 8 N -0.445 5.445 9 C -0.353 4.353 10 H 0.097 0.903 11 C 0.020 3.980 12 N -0.860 5.860 13 Si 0.972 3.028 14 H -0.249 1.249 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.111 3.889 18 C -0.122 4.122 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.141 4.141 22 S 0.252 5.748 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.259 0.741 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.095 0.905 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.989 -8.426 0.591 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.280 4.280 3 N -0.220 5.220 4 C -0.083 4.083 5 C -0.417 4.417 6 C 0.310 3.690 7 O -0.462 6.462 8 N -0.165 5.165 9 C -0.481 4.481 10 H 0.114 0.886 11 C -0.187 4.187 12 N -0.494 5.494 13 Si 0.797 3.203 14 H -0.173 1.173 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.006 3.994 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.180 4.180 22 S 0.510 5.490 23 H 0.120 0.880 24 H 0.126 0.874 25 H 0.108 0.892 26 H 0.178 0.822 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.006 -8.453 0.568 17.232 hybrid contribution 2.206 1.604 0.005 2.727 sum -12.800 -6.849 0.573 14.528 Atomic orbital electron populations 1.20649 0.82059 1.05484 1.05212 1.28693 1.04314 0.93815 1.01139 1.66181 1.04057 1.33336 1.18409 1.22132 0.91320 0.95185 0.99683 1.26424 0.99189 0.98591 1.17544 1.17084 0.85587 0.83991 0.82324 1.90608 1.45799 1.55828 1.54009 1.43500 1.06726 1.04231 1.62037 1.19224 0.82447 1.14083 1.32315 0.88590 1.26164 1.03634 0.95127 0.93785 1.69975 1.33630 1.27676 1.18126 0.85346 0.78243 0.78891 0.77864 1.17326 1.21707 1.20708 1.22235 0.89015 0.92418 0.95683 1.22678 1.01728 0.91419 1.00172 1.22464 1.00678 0.96991 0.94452 1.22266 1.01447 0.93614 0.97697 1.22999 1.00562 0.98980 0.95478 1.83727 0.93121 1.07655 1.64502 0.87955 0.87424 0.89180 0.82163 0.93149 0.90794 0.90692 0.90338 0.88851 0.90263 0.89143 0.94023 0.88722 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.46 71.24 0.74 -0.54 16 2 C -0.01 -0.19 7.37 88.47 0.65 0.46 16 3 N -0.50 -18.76 10.50 -189.50 -1.99 -20.75 16 4 C 0.07 3.22 11.17 84.48 0.94 4.16 16 5 C -0.29 -13.13 5.91 24.10 0.14 -12.99 16 6 C 0.52 28.69 6.54 86.41 0.56 29.25 16 7 O -0.58 -37.31 14.39 -4.41 -0.06 -37.37 16 8 N -0.44 -22.57 2.56 -613.96 -1.57 -24.14 16 9 C -0.35 -19.10 7.39 84.09 0.62 -18.48 16 10 H 0.10 4.82 6.90 -2.91 -0.02 4.80 16 11 C 0.02 1.16 4.36 84.94 0.37 1.53 16 12 N -0.86 -52.90 11.62 21.67 0.25 -52.65 16 13 Si 0.97 45.24 29.60 68.60 2.03 47.27 16 14 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 17 C 0.11 4.24 2.78 45.71 0.13 4.37 16 18 C -0.12 -3.99 5.77 31.69 0.18 -3.81 16 19 C -0.11 -2.64 6.91 31.91 0.22 -2.42 16 20 C -0.11 -3.24 6.83 31.67 0.22 -3.02 16 21 C -0.14 -4.95 4.81 31.32 0.15 -4.80 16 22 S 0.25 7.73 15.16 -56.49 -0.86 6.88 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.16 7.26 8.06 -2.91 -0.02 7.24 16 27 H 0.26 15.45 8.32 -92.71 -0.77 14.68 16 28 H 0.08 2.53 5.32 -17.23 -0.09 2.44 16 29 H 0.07 2.95 5.80 -2.39 -0.01 2.94 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 2.73 5.39 -16.57 -0.09 2.64 16 36 H 0.03 1.29 7.49 -2.39 -0.02 1.27 16 Total: -1.00 -76.88 297.86 3.68 -73.20 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.94 Total: 13.84 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 4.94 Total: -6.28 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -3.31 Total: -97.54 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.06 Total: -37.37 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -0.86 Total: 6.88 kcal Total: -76.88 3.68 -73.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172454271.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.599 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds