Wall clock time and date at job start Tue Mar 31 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21683 * 120.00206 * 359.72112 * 14 13 3 16 16 C 1.46680 * 119.99703 * 179.72441 * 14 13 3 17 17 S 1.76220 * 126.13106 * 0.02562 * 16 14 13 18 18 C 1.70954 * 90.31110 * 179.97438 * 17 16 14 19 19 N 1.29422 * 110.39680 * 0.02562 * 18 17 16 20 20 C 1.30948 * 117.36196 * 359.72846 * 19 18 17 21 21 C 1.50703 * 122.90485 * 180.30932 * 20 19 18 22 22 C 1.52997 * 117.50059 * 8.81429 * 21 20 19 23 23 C 1.53000 * 117.49751 * 300.18807 * 21 20 19 24 24 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 25 25 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 27 27 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 31 31 H 1.08003 * 124.79760 * 180.02562 * 18 17 16 32 32 H 1.08997 * 115.54645 * 154.52544 * 21 20 19 33 33 H 1.09004 * 117.49456 * 0.02562 * 22 21 20 34 34 H 1.08998 * 117.49852 * 145.02374 * 22 21 20 35 35 H 1.08995 * 117.50052 * 214.98270 * 23 21 20 36 36 H 1.08998 * 117.49892 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3400 2.6371 -0.4291 16 6 0.0514 3.3304 -2.6162 17 16 1.0436 3.4713 -4.0657 18 6 -0.2108 4.3256 -4.8526 19 7 -1.2295 4.4578 -4.0652 20 6 -1.1351 3.9386 -2.8667 21 6 -2.2471 4.0133 -1.8523 22 6 -3.6011 4.5452 -2.3262 23 6 -2.7166 5.4038 -1.4198 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0619 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 -0.1604 4.7017 -5.8637 32 1 -2.2512 3.2242 -1.1004 33 1 -3.6877 4.8408 -3.3718 34 1 -4.4964 4.1061 -1.8861 35 1 -3.0299 5.5294 -0.3834 36 1 -2.2208 6.2645 -1.8686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183901703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:11 Heat of formation + Delta-G solvation = 28.103152 kcal Electronic energy + Delta-G solvation = -19702.362849 eV Core-core repulsion = 16700.145539 eV Total energy + Delta-G solvation = -3002.217311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29693 -38.69055 -36.36081 -35.10191 -32.49076 -31.29435 -30.14042 -27.21460 -25.81602 -23.31899 -22.69699 -22.21363 -21.39479 -19.57311 -19.20320 -17.91018 -17.05464 -15.99382 -15.51333 -15.23560 -15.03435 -14.64259 -14.28815 -14.00159 -13.91395 -13.18834 -12.72560 -12.23469 -12.11399 -11.57784 -11.49154 -11.40574 -11.27843 -11.01307 -10.85859 -10.66165 -10.37686 -10.26840 -10.21058 -9.84542 -9.67740 -9.42115 -9.16723 -9.08192 -8.63896 -8.53888 -7.92068 -6.15811 -4.25654 0.36953 1.26425 1.64113 2.53302 3.23744 3.29269 3.30186 3.68119 3.90927 4.07498 4.21543 4.35215 4.77619 4.96695 5.15694 5.17418 5.28621 5.44577 5.61799 5.75650 5.91240 6.15131 6.26127 6.36009 6.41995 6.45319 6.62318 7.00434 7.14231 7.28954 7.35277 7.55204 7.61697 7.69053 7.84525 8.12754 8.53673 8.70395 8.97398 9.41288 10.89503 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.005007 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.574099 B = 5590.816668 C = 6251.398865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.580 3.420 15 O -0.526 6.526 16 C -0.265 4.265 17 S 0.159 5.841 18 C 0.019 3.981 19 N -0.471 5.471 20 C 0.156 3.844 21 C -0.090 4.090 22 C -0.167 4.167 23 C -0.158 4.158 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.101 0.899 29 H 0.266 0.734 30 H 0.386 0.614 31 H 0.202 0.798 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 6.219 -12.214 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.346 5.346 14 C 0.363 3.637 15 O -0.406 6.406 16 C -0.389 4.389 17 S 0.413 5.587 18 C -0.277 4.277 19 N -0.185 5.185 20 C 0.019 3.981 21 C -0.110 4.110 22 C -0.204 4.204 23 C -0.196 4.196 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.218 0.782 31 H 0.219 0.781 32 H 0.163 0.837 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.698 6.039 -11.887 14.920 hybrid contribution 0.790 0.065 0.082 0.797 sum -5.908 6.103 -11.805 14.543 Atomic orbital electron populations 1.21849 0.98305 0.98206 1.01208 1.21942 0.92666 0.99608 1.02429 1.18870 0.94417 0.89257 0.80463 0.92921 1.21166 0.90527 1.39382 1.06446 0.92134 1.24865 0.98657 0.94683 0.95293 1.69877 1.35279 1.37350 1.09332 0.86505 0.84750 0.78353 0.77498 1.20152 1.21083 1.20124 1.46483 1.13922 1.55355 1.18831 1.16665 0.83280 0.78976 0.84771 1.90748 1.51092 1.60341 1.38393 1.25918 0.99299 1.12982 1.00719 1.84007 1.19560 1.50016 1.05087 1.28539 0.92474 1.02306 1.04361 1.65929 1.28193 1.20874 1.03495 1.19679 0.93463 0.94058 0.90876 1.20887 0.91236 1.00191 0.98705 1.22964 0.93239 1.03653 1.00565 1.22886 1.03193 0.93310 1.00221 0.94390 0.95717 0.93000 0.94974 0.88084 0.92431 0.78177 0.78141 0.83700 0.88073 0.88650 0.88240 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.50 7.57 -51.93 -0.39 1.11 16 5 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.24 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.70 -14.58 5.01 -56.24 -0.28 -14.86 16 14 C 0.58 11.73 6.36 -12.85 -0.08 11.65 16 15 O -0.53 -11.85 11.47 5.20 0.06 -11.79 16 16 C -0.26 -4.45 6.48 -37.10 -0.24 -4.69 16 17 S 0.16 1.95 22.35 -107.50 -2.40 -0.45 16 18 C 0.02 0.21 12.22 51.75 0.63 0.84 16 19 N -0.47 -6.67 9.81 -11.53 -0.11 -6.78 16 20 C 0.16 2.50 6.41 -83.89 -0.54 1.96 16 21 C -0.09 -1.39 5.44 -91.77 -0.50 -1.89 16 22 C -0.17 -2.09 10.09 -26.73 -0.27 -2.36 16 23 C -0.16 -2.10 10.23 -26.73 -0.27 -2.37 16 24 H 0.04 0.81 5.66 -51.93 -0.29 0.52 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.36 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.39 7.19 7.72 -40.82 -0.32 6.87 16 31 H 0.20 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.15 2.53 6.17 -51.93 -0.32 2.21 16 33 H 0.10 1.26 7.74 -51.93 -0.40 0.86 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -29.22 311.73 -8.60 -37.82 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.52 Total: 8.46 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.65 Total: -8.76 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.23 Total: -45.25 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.06 Total: -11.79 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.40 Total: -0.45 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.22 -8.60 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183901703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.925 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds