Wall clock time and date at job start Tue Mar 31 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21683 * 120.00206 * 359.72112 * 14 13 3 16 16 C 1.46680 * 119.99703 * 179.72441 * 14 13 3 17 17 S 1.76220 * 126.13106 * 0.02562 * 16 14 13 18 18 C 1.70954 * 90.31110 * 179.97438 * 17 16 14 19 19 N 1.29422 * 110.39680 * 0.02562 * 18 17 16 20 20 C 1.30948 * 117.36196 * 359.72846 * 19 18 17 21 21 C 1.50703 * 122.90485 * 180.30932 * 20 19 18 22 22 C 1.52997 * 117.50059 * 8.81429 * 21 20 19 23 23 C 1.53000 * 117.49751 * 300.18807 * 21 20 19 24 24 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 25 25 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 27 27 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 31 31 H 1.08003 * 124.79760 * 180.02562 * 18 17 16 32 32 H 1.08997 * 115.54645 * 154.52544 * 21 20 19 33 33 H 1.09004 * 117.49456 * 0.02562 * 22 21 20 34 34 H 1.08998 * 117.49852 * 145.02374 * 22 21 20 35 35 H 1.08995 * 117.50052 * 214.98270 * 23 21 20 36 36 H 1.08998 * 117.49892 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3400 2.6371 -0.4291 16 6 0.0514 3.3304 -2.6162 17 16 1.0436 3.4713 -4.0657 18 6 -0.2108 4.3256 -4.8526 19 7 -1.2295 4.4578 -4.0652 20 6 -1.1351 3.9386 -2.8667 21 6 -2.2471 4.0133 -1.8523 22 6 -3.6011 4.5452 -2.3262 23 6 -2.7166 5.4038 -1.4198 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0619 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 -0.1604 4.7017 -5.8637 32 1 -2.2512 3.2242 -1.1004 33 1 -3.6877 4.8408 -3.3718 34 1 -4.4964 4.1061 -1.8861 35 1 -3.0299 5.5294 -0.3834 36 1 -2.2208 6.2645 -1.8686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183901703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:11 Heat of formation + Delta-G solvation = 9.669478 kcal Electronic energy + Delta-G solvation = -19703.162193 eV Core-core repulsion = 16700.145539 eV Total energy + Delta-G solvation = -3003.016655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50616 -40.22250 -37.44256 -36.92369 -34.36267 -33.05848 -31.46457 -29.05175 -27.05407 -25.09837 -23.92801 -23.24662 -22.88699 -21.41302 -20.62661 -19.11026 -18.56570 -17.55465 -17.11041 -16.71429 -16.50256 -16.13039 -15.45909 -15.35666 -15.20455 -14.65021 -14.60243 -13.89930 -13.50357 -13.31410 -13.18722 -12.95893 -12.66136 -12.56435 -12.39728 -12.20589 -12.07808 -11.73606 -11.60709 -11.35320 -11.09685 -10.99997 -10.63285 -10.55163 -10.50465 -9.79297 -9.61968 -8.16787 -6.34508 -0.73305 0.21204 0.60286 1.41599 1.45530 1.47073 1.54872 2.19738 2.31331 2.53693 3.00132 3.12757 3.17350 3.67485 3.95616 4.04260 4.14458 4.26654 4.47684 4.51071 4.55167 4.73567 4.74330 4.88187 5.04186 5.07358 5.23072 5.23950 5.30758 5.41153 5.51376 5.57697 5.75804 5.87193 6.14031 6.55377 6.70879 6.85432 7.28281 7.44080 8.88450 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.005007 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.574099 B = 5590.816668 C = 6251.398865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.004 0.996 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.700 5.700 14 C 0.579 3.421 15 O -0.560 6.560 16 C -0.319 4.319 17 S 0.205 5.795 18 C 0.049 3.951 19 N -0.492 5.492 20 C 0.165 3.835 21 C -0.124 4.124 22 C -0.141 4.141 23 C -0.153 4.153 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.266 0.734 30 H 0.397 0.603 31 H 0.253 0.747 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 7.111 -15.055 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.022 0.978 5 C -0.590 4.590 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.348 5.348 14 C 0.365 3.635 15 O -0.442 6.442 16 C -0.443 4.443 17 S 0.460 5.540 18 C -0.246 4.246 19 N -0.206 5.206 20 C 0.028 3.972 21 C -0.144 4.144 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.268 0.732 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.214 6.938 -14.771 17.462 hybrid contribution 0.583 -0.142 0.870 1.057 sum -5.631 6.796 -13.901 16.466 Atomic orbital electron populations 1.21677 0.96958 0.99237 1.00219 1.21787 0.93773 0.98952 1.01419 1.18450 0.93879 0.89243 0.80717 0.97806 1.21505 0.91213 1.39375 1.06893 0.91211 1.25732 1.03297 0.94210 0.94884 1.70030 1.37162 1.38060 1.09821 0.85435 0.79064 0.78450 0.77628 1.19711 1.21103 1.18874 1.46209 1.14786 1.55860 1.17934 1.17062 0.82349 0.78237 0.85813 1.90723 1.51832 1.61400 1.40240 1.25513 1.01462 1.15857 1.01505 1.83796 1.18440 1.49535 1.02190 1.29478 0.90728 0.99028 1.05371 1.66021 1.29400 1.22145 1.03022 1.19809 0.92991 0.92904 0.91546 1.20827 0.93471 1.00776 0.99364 1.23020 0.92280 1.01794 1.00759 1.22941 1.03009 0.92187 1.00950 0.94206 0.93489 0.95140 0.94164 0.90624 0.92495 0.76856 0.73167 0.86552 0.87461 0.87014 0.87622 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.52 71.98 0.61 -4.99 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.42 2.24 44.25 0.10 14.52 16 4 H 0.00 0.25 7.57 -2.39 -0.02 0.23 16 5 C -0.55 -29.11 8.73 25.60 0.22 -28.89 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 13 N -0.70 -29.95 5.01 -450.08 -2.26 -32.20 16 14 C 0.58 24.26 6.36 86.45 0.55 24.81 16 15 O -0.56 -26.80 11.47 -4.29 -0.05 -26.85 16 16 C -0.32 -10.65 6.48 23.88 0.15 -10.49 16 17 S 0.20 4.52 22.35 -56.49 -1.26 3.26 16 18 C 0.05 0.89 12.22 130.60 1.60 2.48 16 19 N -0.49 -12.63 9.81 -190.39 -1.87 -14.49 16 20 C 0.17 5.19 6.41 42.09 0.27 5.46 16 21 C -0.12 -3.88 5.44 -11.54 -0.06 -3.94 16 22 C -0.14 -3.35 10.09 30.60 0.31 -3.04 16 23 C -0.15 -3.98 10.23 30.60 0.31 -3.66 16 24 H 0.04 1.76 5.66 -2.39 -0.01 1.75 16 25 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.03 1.47 7.85 -2.39 -0.02 1.45 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 4.15 5.95 -2.39 -0.01 4.13 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.40 14.81 7.72 -92.71 -0.72 14.10 16 31 H 0.25 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.12 4.32 6.17 -2.39 -0.01 4.31 16 33 H 0.11 2.43 7.74 -2.38 -0.02 2.42 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -66.29 311.73 1.91 -64.38 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.39 Total: 25.76 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.68 Total: -12.05 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -3.88 Total: -98.15 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.26 Total: 3.26 kcal Total: -66.29 1.91 -64.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183901703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.053 kcal (2) G-P(sol) polarization free energy of solvation -66.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds