Wall clock time and date at job start Tue Mar 31 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.09005 * 109.46989 * 305.26470 * 3 2 1 5 5 C 1.50699 * 109.46769 * 185.26901 * 3 2 1 6 6 H 1.08000 * 119.99632 * 245.24841 * 5 3 2 7 7 C 1.37877 * 120.00340 * 64.97841 * 5 3 2 8 8 N 1.31506 * 119.99981 * 6.90639 * 7 5 3 9 9 Si 1.86805 * 120.00011 * 186.91218 * 7 5 3 10 10 H 1.48501 * 109.47050 * 93.76224 * 9 7 5 11 11 H 1.48491 * 109.47116 * 213.76350 * 9 7 5 12 12 H 1.48500 * 109.47002 * 333.76252 * 9 7 5 13 13 N 1.46500 * 109.47458 * 65.26558 * 3 2 1 14 14 C 1.34780 * 119.99749 * 275.00201 * 13 3 2 15 15 O 1.21685 * 120.00350 * 359.97438 * 14 13 3 16 16 C 1.46685 * 119.99357 * 180.02562 * 14 13 3 17 17 S 1.76210 * 126.13292 * 359.68683 * 16 14 13 18 18 C 1.70954 * 90.31342 * 179.97438 * 17 16 14 19 19 N 1.29428 * 110.39106 * 0.34769 * 18 17 16 20 20 C 1.30941 * 117.36429 * 359.72595 * 19 18 17 21 21 C 1.50704 * 122.90651 * 180.02562 * 20 19 18 22 22 C 1.53004 * 117.49738 * 8.62114 * 21 20 19 23 23 C 1.52999 * 117.49865 * 299.99812 * 21 20 19 24 24 H 1.09004 * 109.47578 * 59.99747 * 1 2 3 25 25 H 1.08996 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46840 * 300.00513 * 1 2 3 27 27 H 1.08995 * 109.46596 * 240.00051 * 2 1 3 28 28 H 1.08997 * 109.47312 * 119.99648 * 2 1 3 29 29 H 0.96995 * 120.00150 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00070 * 94.99847 * 13 3 2 31 31 H 1.08004 * 124.80671 * 180.02562 * 18 17 16 32 32 H 1.09001 * 115.54707 * 154.32647 * 21 20 19 33 33 H 1.09004 * 117.49673 * 359.97438 * 22 21 20 34 34 H 1.08998 * 117.49858 * 145.02489 * 22 21 20 35 35 H 1.08996 * 117.49953 * 214.97819 * 23 21 20 36 36 H 1.09005 * 117.49383 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9828 -0.8391 5 6 3.5413 1.4445 -0.1305 6 1 4.1533 1.8106 0.6806 7 6 4.1338 0.9737 -1.2830 8 7 3.3914 0.6504 -2.3192 9 14 5.9911 0.7949 -1.3725 10 1 6.3735 -0.5911 -1.0011 11 1 6.4498 1.0812 -2.7555 12 1 6.6265 1.7526 -0.4321 13 7 1.6579 2.0956 1.2545 14 6 0.4411 2.6623 1.3758 15 8 -0.3400 2.6319 0.4432 16 6 0.0588 3.3167 2.6317 17 16 1.0547 3.4491 4.0793 18 6 -0.1967 4.3010 4.8736 19 7 -1.2200 4.4315 4.0920 20 6 -1.1275 3.9224 2.8892 21 6 -2.2421 4.0028 1.8781 22 6 -3.4447 4.8845 2.2210 23 6 -3.5803 3.3607 2.2493 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8082 0.3188 -3.1299 30 1 2.2807 2.1202 1.9978 31 1 -0.1431 4.6728 5.8863 32 1 -1.9337 3.9557 0.8337 33 1 -3.4298 5.4059 3.1781 34 1 -3.9277 5.4176 1.4021 35 1 -4.1525 2.8915 1.4491 36 1 -3.6543 2.8797 3.2247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183901720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:13 Heat of formation + Delta-G solvation = 26.790131 kcal Electronic energy + Delta-G solvation = -19707.358553 eV Core-core repulsion = 16705.084305 eV Total energy + Delta-G solvation = -3002.274247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29742 -38.69327 -36.36111 -35.09098 -32.46894 -31.35952 -30.15582 -27.21629 -25.82014 -23.31810 -22.68789 -22.21575 -21.41953 -19.61211 -19.20561 -17.91222 -17.04735 -16.00752 -15.47597 -15.34366 -14.90989 -14.68080 -14.26844 -14.09481 -13.85275 -13.20814 -12.73835 -12.21479 -12.14708 -11.53561 -11.50907 -11.40938 -11.37278 -11.01907 -10.82901 -10.66148 -10.39822 -10.27714 -10.22229 -9.84584 -9.73054 -9.42092 -9.16024 -9.10289 -8.64130 -8.54027 -7.93472 -6.17930 -4.24768 0.36903 1.26383 1.64087 2.53286 3.22545 3.29982 3.31611 3.68033 3.90568 4.07941 4.21381 4.35453 4.77480 4.96641 5.15562 5.17247 5.28729 5.44294 5.61766 5.75353 5.91006 6.15165 6.25915 6.32509 6.37432 6.45325 6.57561 6.96823 7.11972 7.25734 7.33202 7.53106 7.62008 7.68013 7.78835 8.02718 8.53703 8.71845 8.97404 9.41382 10.90002 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.005040 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.557257 B = 5553.915803 C = 6317.484977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.269 3.731 4 H 0.059 0.941 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.699 5.699 14 C 0.580 3.420 15 O -0.525 6.525 16 C -0.265 4.265 17 S 0.159 5.841 18 C 0.019 3.981 19 N -0.471 5.471 20 C 0.156 3.844 21 C -0.090 4.090 22 C -0.167 4.167 23 C -0.158 4.158 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.202 0.798 32 H 0.146 0.854 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 5.197 12.787 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.077 0.923 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.363 3.637 15 O -0.405 6.405 16 C -0.389 4.389 17 S 0.413 5.587 18 C -0.277 4.277 19 N -0.185 5.185 20 C 0.019 3.981 21 C -0.110 4.110 22 C -0.204 4.204 23 C -0.196 4.196 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.219 0.781 32 H 0.163 0.837 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.960 5.046 12.453 15.132 hybrid contribution 0.796 -0.077 -0.080 0.804 sum -6.164 4.969 12.373 14.689 Atomic orbital electron populations 1.21851 0.97977 0.98291 1.01521 1.21863 0.93014 0.99661 1.01443 1.18881 0.94640 0.89073 0.80588 0.92336 1.21174 0.90428 1.43948 1.02080 0.92071 1.24871 0.98538 0.94962 0.95032 1.69960 1.35433 1.42966 1.03268 0.86481 0.84911 0.78507 0.77500 1.20500 1.21077 1.19800 1.46472 1.13724 1.55580 1.18812 1.16668 0.83245 0.79023 0.84749 1.90751 1.51068 1.59792 1.38901 1.25916 0.99369 1.12986 1.00656 1.84002 1.19680 1.50032 1.04944 1.28541 0.92425 1.02310 1.04406 1.65929 1.28164 1.20804 1.03596 1.19678 0.93555 0.94118 0.90714 1.20893 0.85692 1.06190 0.98242 1.22966 1.00728 0.93285 1.03433 1.22884 0.98227 0.95712 1.02799 0.92862 0.95695 0.94067 0.89741 0.94742 0.92503 0.78195 0.78143 0.83672 0.88069 0.88634 0.88255 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.52 37.16 0.32 -2.71 16 2 C -0.12 -2.85 5.49 -26.73 -0.15 -3.00 16 3 C 0.27 6.65 2.11 -69.08 -0.15 6.50 16 4 H 0.06 1.67 7.55 -51.93 -0.39 1.28 16 5 C -0.54 -13.97 8.67 -34.44 -0.30 -14.27 16 6 H 0.06 1.53 7.73 -52.49 -0.41 1.12 16 7 C 0.07 1.85 5.20 -17.82 -0.09 1.76 16 8 N -0.88 -24.41 12.00 55.43 0.67 -23.75 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 13 N -0.70 -14.52 5.02 -56.24 -0.28 -14.81 16 14 C 0.58 11.70 6.36 -12.85 -0.08 11.61 16 15 O -0.53 -11.82 11.46 5.20 0.06 -11.76 16 16 C -0.26 -4.44 6.48 -37.09 -0.24 -4.68 16 17 S 0.16 1.95 22.35 -107.50 -2.40 -0.45 16 18 C 0.02 0.21 12.22 51.75 0.63 0.84 16 19 N -0.47 -6.65 9.80 -11.53 -0.11 -6.77 16 20 C 0.16 2.50 6.42 -83.89 -0.54 1.96 16 21 C -0.09 -1.39 5.44 -91.77 -0.50 -1.89 16 22 C -0.17 -2.09 10.09 -26.73 -0.27 -2.36 16 23 C -0.16 -2.08 10.23 -26.73 -0.27 -2.35 16 24 H 0.05 1.23 7.86 -51.93 -0.41 0.82 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 27 H 0.08 2.19 6.65 -51.93 -0.35 1.85 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 7.15 7.71 -40.82 -0.31 6.83 16 31 H 0.20 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.15 2.54 6.17 -51.93 -0.32 2.22 16 33 H 0.10 1.27 7.74 -51.93 -0.40 0.86 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -29.40 312.84 -8.57 -37.97 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.55 Total: 8.16 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.64 Total: -8.59 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.27 Total: -45.32 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.06 Total: -11.76 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.40 Total: -0.45 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.40 -8.57 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183901720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.759 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds