Wall clock time and date at job start Tue Mar 31 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 H 1.09005 * 109.46989 * 305.26470 * 3 2 1 5 5 C 1.50699 * 109.46769 * 185.26901 * 3 2 1 6 6 H 1.08000 * 119.99632 * 245.24841 * 5 3 2 7 7 C 1.37877 * 120.00340 * 64.97841 * 5 3 2 8 8 N 1.31506 * 119.99981 * 6.90639 * 7 5 3 9 9 Si 1.86805 * 120.00011 * 186.91218 * 7 5 3 10 10 H 1.48501 * 109.47050 * 93.76224 * 9 7 5 11 11 H 1.48491 * 109.47116 * 213.76350 * 9 7 5 12 12 H 1.48500 * 109.47002 * 333.76252 * 9 7 5 13 13 N 1.46500 * 109.47458 * 65.26558 * 3 2 1 14 14 C 1.34780 * 119.99749 * 275.00201 * 13 3 2 15 15 O 1.21685 * 120.00350 * 359.97438 * 14 13 3 16 16 C 1.46685 * 119.99357 * 180.02562 * 14 13 3 17 17 S 1.76210 * 126.13292 * 359.68683 * 16 14 13 18 18 C 1.70954 * 90.31342 * 179.97438 * 17 16 14 19 19 N 1.29428 * 110.39106 * 0.34769 * 18 17 16 20 20 C 1.30941 * 117.36429 * 359.72595 * 19 18 17 21 21 C 1.50704 * 122.90651 * 180.02562 * 20 19 18 22 22 C 1.53004 * 117.49738 * 8.62114 * 21 20 19 23 23 C 1.52999 * 117.49865 * 299.99812 * 21 20 19 24 24 H 1.09004 * 109.47578 * 59.99747 * 1 2 3 25 25 H 1.08996 * 109.47557 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46840 * 300.00513 * 1 2 3 27 27 H 1.08995 * 109.46596 * 240.00051 * 2 1 3 28 28 H 1.08997 * 109.47312 * 119.99648 * 2 1 3 29 29 H 0.96995 * 120.00150 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00070 * 94.99847 * 13 3 2 31 31 H 1.08004 * 124.80671 * 180.02562 * 18 17 16 32 32 H 1.09001 * 115.54707 * 154.32647 * 21 20 19 33 33 H 1.09004 * 117.49673 * 359.97438 * 22 21 20 34 34 H 1.08998 * 117.49858 * 145.02489 * 22 21 20 35 35 H 1.08996 * 117.49953 * 214.97819 * 23 21 20 36 36 H 1.09005 * 117.49383 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9828 -0.8391 5 6 3.5413 1.4445 -0.1305 6 1 4.1533 1.8106 0.6806 7 6 4.1338 0.9737 -1.2830 8 7 3.3914 0.6504 -2.3192 9 14 5.9911 0.7949 -1.3725 10 1 6.3735 -0.5911 -1.0011 11 1 6.4498 1.0812 -2.7555 12 1 6.6265 1.7526 -0.4321 13 7 1.6579 2.0956 1.2545 14 6 0.4411 2.6623 1.3758 15 8 -0.3400 2.6319 0.4432 16 6 0.0588 3.3167 2.6317 17 16 1.0547 3.4491 4.0793 18 6 -0.1967 4.3010 4.8736 19 7 -1.2200 4.4315 4.0920 20 6 -1.1275 3.9224 2.8892 21 6 -2.2421 4.0028 1.8781 22 6 -3.4447 4.8845 2.2210 23 6 -3.5803 3.3607 2.2493 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8082 0.3188 -3.1299 30 1 2.2807 2.1202 1.9978 31 1 -0.1431 4.6728 5.8863 32 1 -1.9337 3.9557 0.8337 33 1 -3.4298 5.4059 3.1781 34 1 -3.9277 5.4176 1.4021 35 1 -4.1525 2.8915 1.4491 36 1 -3.6543 2.8797 3.2247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183901720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:13 Heat of formation + Delta-G solvation = 8.103325 kcal Electronic energy + Delta-G solvation = -19708.168873 eV Core-core repulsion = 16705.084305 eV Total energy + Delta-G solvation = -3003.084568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50336 -40.22071 -37.43856 -36.90585 -34.35113 -33.11988 -31.46301 -29.05339 -27.05519 -25.09329 -23.92034 -23.24389 -22.90605 -21.43649 -20.62778 -19.10983 -18.55591 -17.56417 -17.10730 -16.77046 -16.44523 -16.06214 -15.60518 -15.32208 -15.13793 -14.67205 -14.61090 -13.89591 -13.48233 -13.30557 -13.28536 -12.95930 -12.65909 -12.54769 -12.39253 -12.21410 -12.09693 -11.73098 -11.64217 -11.34272 -11.10822 -10.99793 -10.62520 -10.54416 -10.52898 -9.79607 -9.61819 -8.19841 -6.34311 -0.72999 0.21529 0.60570 1.41902 1.44875 1.45431 1.55923 2.19962 2.31591 2.53330 3.00266 3.12182 3.17888 3.67561 3.95905 4.04508 4.15086 4.26996 4.45394 4.51372 4.52407 4.70677 4.74633 4.88451 5.03880 5.07647 5.22088 5.23512 5.30893 5.39761 5.48516 5.57822 5.72525 5.85514 6.05029 6.55752 6.72474 6.85443 7.28462 7.43945 8.88616 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.005040 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.557257 B = 5553.915803 C = 6317.484977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.008 0.992 5 C -0.551 4.551 6 H 0.071 0.929 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.699 5.699 14 C 0.579 3.421 15 O -0.560 6.560 16 C -0.319 4.319 17 S 0.205 5.795 18 C 0.049 3.951 19 N -0.492 5.492 20 C 0.165 3.835 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.150 4.150 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.266 0.734 30 H 0.397 0.603 31 H 0.252 0.748 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.595 5.802 15.818 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.026 0.974 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.187 1.187 13 N -0.348 5.348 14 C 0.365 3.635 15 O -0.442 6.442 16 C -0.443 4.443 17 S 0.461 5.539 18 C -0.246 4.246 19 N -0.206 5.206 20 C 0.028 3.972 21 C -0.145 4.145 22 C -0.180 4.180 23 C -0.188 4.188 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.232 0.768 31 H 0.268 0.732 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.507 5.659 15.528 17.762 hybrid contribution 0.602 -0.182 -0.927 1.120 sum -5.905 5.477 14.601 16.675 Atomic orbital electron populations 1.21678 0.96667 0.99381 1.00428 1.21709 0.94086 0.98838 1.00578 1.18458 0.94024 0.89183 0.80794 0.97412 1.21519 0.91163 1.43762 1.02453 0.91130 1.25740 1.03198 0.94544 0.94600 1.70106 1.37437 1.43880 1.03856 0.85401 0.79180 0.78817 0.77364 1.19723 1.21301 1.18680 1.46200 1.14591 1.56086 1.17908 1.17065 0.82330 0.78275 0.85790 1.90727 1.51829 1.60871 1.40736 1.25511 1.01594 1.15815 1.01414 1.83787 1.18522 1.49563 1.02025 1.29479 0.90689 0.99028 1.05430 1.66019 1.29386 1.22059 1.03134 1.19804 0.93126 0.92907 0.91408 1.20820 0.87027 1.09563 0.97074 1.23022 0.98029 0.92959 1.04040 1.22939 0.96296 0.96478 1.03070 0.95174 0.93322 0.93914 0.92380 0.93524 0.92539 0.76847 0.73176 0.86694 0.87476 0.87119 0.87571 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.11 -5.50 5.49 30.60 0.17 -5.33 16 3 C 0.28 14.29 2.11 44.25 0.09 14.38 16 4 H 0.01 0.49 7.55 -2.38 -0.02 0.47 16 5 C -0.55 -29.05 8.67 25.60 0.22 -28.83 16 6 H 0.07 3.50 7.73 -2.91 -0.02 3.47 16 7 C 0.02 1.06 5.20 84.66 0.44 1.50 16 8 N -0.92 -52.47 12.00 21.45 0.26 -52.21 16 9 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 N -0.70 -29.81 5.02 -450.06 -2.26 -32.07 16 14 C 0.58 24.20 6.36 86.45 0.55 24.75 16 15 O -0.56 -26.79 11.46 -4.30 -0.05 -26.84 16 16 C -0.32 -10.61 6.48 23.88 0.15 -10.46 16 17 S 0.21 4.51 22.35 -56.49 -1.26 3.24 16 18 C 0.05 0.88 12.22 130.60 1.60 2.48 16 19 N -0.49 -12.60 9.80 -190.39 -1.87 -14.47 16 20 C 0.17 5.19 6.42 42.10 0.27 5.46 16 21 C -0.12 -3.89 5.44 -11.54 -0.06 -3.96 16 22 C -0.14 -3.41 10.09 30.60 0.31 -3.10 16 23 C -0.15 -3.83 10.23 30.60 0.31 -3.52 16 24 H 0.03 1.45 7.86 -2.38 -0.02 1.43 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.88 5.64 -2.39 -0.01 1.86 16 27 H 0.06 3.13 6.65 -2.39 -0.02 3.11 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.40 14.71 7.71 -92.71 -0.71 13.99 16 31 H 0.25 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.12 4.31 6.17 -2.39 -0.01 4.29 16 33 H 0.11 2.44 7.74 -2.39 -0.02 2.42 16 34 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -66.94 312.84 1.91 -65.03 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.39 Total: 25.14 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 4.67 Total: -11.57 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -3.87 Total: -98.75 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.26 Total: 3.24 kcal Total: -66.94 1.91 -65.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183901720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.134 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds