Wall clock time and date at job start Tue Mar 31 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46946 * 2 1 4 4 H 1.08996 * 109.47064 * 305.69451 * 3 2 1 5 5 C 1.50703 * 109.47081 * 185.69195 * 3 2 1 6 6 H 1.07997 * 120.00042 * 275.00847 * 5 3 2 7 7 C 1.37879 * 119.99515 * 95.00268 * 5 3 2 8 8 N 1.31522 * 119.99458 * 184.82745 * 7 5 3 9 9 Si 1.86794 * 120.00148 * 4.83424 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.85716 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.85524 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.85543 * 9 7 5 13 13 N 1.46497 * 109.46823 * 65.69671 * 3 2 1 14 14 C 1.34780 * 119.99499 * 274.99562 * 13 3 2 15 15 O 1.21769 * 120.00559 * 0.02562 * 14 13 3 16 16 C 1.41553 * 119.99490 * 180.02562 * 14 13 3 17 17 C 1.35563 * 119.99524 * 180.02562 * 16 14 13 18 18 C 1.41725 * 119.99654 * 180.02562 * 17 16 14 19 19 S 1.76209 * 126.19363 * 0.02562 * 18 17 16 20 20 C 1.70917 * 90.39511 * 180.02562 * 19 18 17 21 21 N 1.29361 * 110.64416 * 0.02562 * 20 19 18 22 22 C 1.30956 * 117.49542 * 359.69857 * 21 20 19 23 23 C 1.50698 * 123.07548 * 180.34825 * 22 21 20 24 24 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47216 * 59.99955 * 1 2 3 26 26 H 1.08997 * 109.46939 * 299.99677 * 1 2 3 27 27 H 1.09000 * 109.47216 * 120.00045 * 2 1 3 28 28 H 1.08997 * 109.46939 * 240.00323 * 2 1 3 29 29 H 0.96994 * 119.99378 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00512 * 95.00210 * 13 3 2 31 31 H 1.07991 * 120.00157 * 359.97438 * 16 14 13 32 32 H 1.08001 * 120.00320 * 359.97438 * 17 16 14 33 33 H 1.07993 * 124.67895 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.47484 * 270.19747 * 23 22 21 35 35 H 1.09001 * 109.46865 * 30.20330 * 23 22 21 36 36 H 1.09001 * 109.46828 * 150.19740 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5958 1.9850 -0.8346 5 6 3.5404 1.4449 -0.1409 6 1 4.1651 1.3334 0.7330 7 6 4.1156 1.5894 -1.3856 8 7 5.4205 1.4966 -1.5218 9 14 3.0418 1.9172 -2.8785 10 1 2.7753 3.3741 -2.9863 11 1 3.7401 1.4498 -4.1029 12 1 1.7562 1.1883 -2.7332 13 7 1.6668 2.0924 1.2588 14 6 0.4508 2.6588 1.3901 15 8 -0.3376 2.6300 0.4626 16 6 0.0904 3.2871 2.6062 17 6 -1.1328 3.8564 2.7384 18 6 -1.4935 4.4860 3.9558 19 16 -0.4854 4.6239 5.3945 20 6 -1.7334 5.4671 6.2025 21 7 -2.7652 5.6009 5.4339 22 6 -2.6880 5.1017 4.2257 23 6 -3.8110 5.1926 3.2249 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 5.8252 1.5986 -2.3973 30 1 2.2947 2.1151 1.9978 31 1 0.7895 3.3123 3.4289 32 1 -1.8321 3.8308 1.9158 33 1 -1.6693 5.8371 7.2151 34 1 -4.4625 4.3252 3.3300 35 1 -4.3847 6.1019 3.4043 36 1 -3.3978 5.2168 2.2165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189102858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:38 Heat of formation + Delta-G solvation = -9.290550 kcal Electronic energy + Delta-G solvation = -19020.369736 eV Core-core repulsion = 16016.530913 eV Total energy + Delta-G solvation = -3003.838823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07002 -40.71048 -37.17266 -35.47944 -34.38549 -33.24493 -32.08892 -29.69692 -28.46481 -26.10038 -24.91477 -23.84548 -21.58113 -21.11222 -20.25561 -19.31004 -18.62029 -17.92983 -17.29956 -16.51588 -16.26133 -15.94943 -15.89679 -15.05331 -14.77329 -14.59065 -14.48572 -14.01499 -13.75216 -13.71140 -13.62119 -13.48634 -12.95971 -12.92174 -12.56624 -12.35721 -12.16710 -11.96257 -11.86274 -11.66150 -11.20222 -10.93524 -10.82927 -10.61783 -10.07022 -9.72184 -9.17648 -8.38779 -6.44440 -1.04534 0.30236 0.68914 0.71737 1.29549 1.33807 1.44891 1.77786 2.27531 2.53229 2.61493 3.05747 3.24698 3.86956 3.92985 4.08309 4.20874 4.32966 4.42938 4.44682 4.58836 4.67427 4.71601 4.83959 4.88244 5.09226 5.12782 5.20745 5.27150 5.29288 5.32035 5.43728 5.57902 5.80044 6.15245 6.60788 6.63535 6.94527 7.21853 7.49900 8.76354 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.003852 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.148059 B = 7267.833465 C = 7594.635575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.241 3.759 4 H 0.031 0.969 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.925 3.075 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.254 1.254 13 N -0.700 5.700 14 C 0.535 3.465 15 O -0.592 6.592 16 C -0.219 4.219 17 C 0.029 3.971 18 C -0.251 4.251 19 S 0.187 5.813 20 C 0.028 3.972 21 N -0.500 5.500 22 C 0.098 3.902 23 C -0.087 4.087 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.270 0.730 30 H 0.404 0.596 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.125 6.619 15.467 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.049 0.951 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.178 1.178 13 N -0.348 5.348 14 C 0.327 3.673 15 O -0.476 6.476 16 C -0.242 4.242 17 C 0.007 3.993 18 C -0.372 4.372 19 S 0.445 5.555 20 C -0.265 4.265 21 N -0.214 5.214 22 C -0.040 4.040 23 C -0.146 4.146 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.239 0.761 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.254 0.746 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.894 6.570 15.291 22.333 hybrid contribution -0.142 0.197 -1.107 1.133 sum -15.036 6.767 14.184 21.750 Atomic orbital electron populations 1.21768 0.95758 1.00256 1.01258 1.21984 0.95084 0.97944 1.01192 1.18910 0.93172 0.90348 0.83899 0.95097 1.21237 0.90377 1.50399 0.94574 0.92620 1.25594 0.95747 0.93935 1.01384 1.69983 1.11248 1.50424 1.25265 0.86074 0.80025 0.79267 0.79646 1.20078 1.20326 1.17804 1.46316 1.15361 1.55772 1.17349 1.17383 0.82113 0.79102 0.88748 1.90765 1.51561 1.62116 1.43206 1.22052 0.98891 1.05045 0.98231 1.20526 0.95518 0.89572 0.93719 1.23713 0.99802 1.13060 1.00628 1.83992 1.18267 1.49526 1.03725 1.29227 0.91286 1.00446 1.05554 1.66019 1.29097 1.21975 1.04325 1.21482 0.95222 0.94802 0.92492 1.20553 0.94306 1.04378 0.95389 0.92472 0.94686 0.93141 0.92048 0.93125 0.92063 0.76095 0.84196 0.83862 0.74637 0.89067 0.89489 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.53 71.98 0.61 -4.51 16 2 C -0.12 -5.23 5.59 30.60 0.17 -5.06 16 3 C 0.24 11.31 1.89 44.25 0.08 11.39 16 4 H 0.03 1.60 4.73 -2.39 -0.01 1.59 16 5 C -0.53 -28.54 9.05 25.60 0.23 -28.31 16 6 H 0.06 3.20 8.06 -2.91 -0.02 3.18 16 7 C 0.03 1.90 5.47 84.65 0.46 2.37 16 8 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 9 Si 0.92 44.75 26.99 68.60 1.85 46.60 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.25 -11.99 6.82 99.48 0.68 -11.31 16 13 N -0.70 -27.68 5.02 -455.12 -2.28 -29.96 16 14 C 0.54 19.91 6.16 85.06 0.52 20.43 16 15 O -0.59 -25.54 13.24 -4.57 -0.06 -25.60 16 16 C -0.22 -6.16 9.32 22.47 0.21 -5.95 16 17 C 0.03 0.73 8.96 22.51 0.20 0.93 16 18 C -0.25 -5.43 6.26 22.86 0.14 -5.29 16 19 S 0.19 3.02 21.97 -56.49 -1.24 1.77 16 20 C 0.03 0.41 12.20 130.61 1.59 2.00 16 21 N -0.50 -10.04 10.49 -189.44 -1.99 -12.03 16 22 C 0.10 2.03 6.85 42.41 0.29 2.32 16 23 C -0.09 -1.44 10.04 71.24 0.72 -0.72 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.03 1.44 7.88 -2.39 -0.02 1.42 16 26 H 0.05 1.93 5.63 -2.39 -0.01 1.92 16 27 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.40 14.10 8.55 -92.71 -0.79 13.31 16 31 H 0.14 3.24 7.10 -2.92 -0.02 3.22 16 32 H 0.14 3.74 6.53 -2.91 -0.02 3.72 16 33 H 0.24 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.33 7.10 -2.39 -0.02 1.32 16 Total: -1.00 -68.64 315.66 2.10 -66.54 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.28 Total: 18.33 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 5.24 Total: -10.40 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -3.97 Total: -97.25 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.60 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.24 Total: 1.77 kcal Total: -68.64 2.10 -66.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189102858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.250 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds