Wall clock time and date at job start Tue Mar 31 2020 01:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38274 * 119.54402 * 2 1 4 4 C 1.38500 * 119.23212 * 180.29972 * 3 2 1 5 5 C 1.50703 * 120.81384 * 179.70992 * 4 3 2 6 6 C 1.39280 * 118.36231 * 359.43312 * 4 3 2 7 7 N 1.39950 * 120.48459 * 180.25466 * 6 4 3 8 8 C 1.34776 * 120.00545 * 306.19364 * 7 6 4 9 9 O 1.21290 * 119.99304 * 354.62552 * 8 7 6 10 10 C 1.50693 * 120.00430 * 174.63400 * 8 7 6 11 11 S 1.81003 * 109.47166 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99955 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00406 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99880 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00218 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00056 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47174 * 89.99483 * 16 14 12 18 18 H 1.48499 * 109.47038 * 209.99705 * 16 14 12 19 19 H 1.48500 * 109.47076 * 329.99610 * 16 14 12 20 20 C 1.38845 * 119.02468 * 0.27364 * 6 4 3 21 21 C 1.50704 * 119.66476 * 179.97438 * 20 6 4 22 22 N 1.31818 * 120.66525 * 0.02713 * 20 6 4 23 23 H 1.09003 * 109.46693 * 270.28001 * 1 2 3 24 24 H 1.09000 * 109.46904 * 30.27855 * 1 2 3 25 25 H 1.08997 * 109.47561 * 150.27841 * 1 2 3 26 26 H 1.07998 * 120.37864 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47336 * 276.35669 * 5 4 3 28 28 H 1.09004 * 109.46956 * 156.36055 * 5 4 3 29 29 H 1.08991 * 109.47348 * 36.36359 * 5 4 3 30 30 H 0.97009 * 120.00077 * 126.19765 * 7 6 4 31 31 H 1.09002 * 109.46919 * 299.99369 * 10 8 7 32 32 H 1.09001 * 109.47161 * 59.99658 * 10 8 7 33 33 H 0.96999 * 120.00268 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.46659 * 90.24385 * 21 20 6 35 35 H 1.09005 * 109.46529 * 210.24420 * 21 20 6 36 36 H 1.08998 * 109.47472 * 330.23826 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1889 1.2030 0.0000 4 6 3.5738 1.1954 -0.0063 5 6 4.3528 2.4855 -0.0131 6 6 4.2288 -0.0337 -0.0003 7 7 5.6271 -0.0931 -0.0010 8 6 6.3291 0.5619 -0.9468 9 8 5.7494 1.1218 -1.8533 10 6 7.8340 0.5986 -0.8782 11 16 8.4789 1.5464 -2.2790 12 6 10.2073 1.4308 -1.9568 13 1 10.5605 0.8876 -1.0927 14 6 11.1150 2.0388 -2.8129 15 7 10.6846 2.7014 -3.8658 16 14 12.9474 1.9169 -2.4710 17 1 13.4975 0.7128 -3.1440 18 1 13.6296 3.1294 -2.9904 19 1 13.1718 1.8116 -1.0068 20 6 3.4742 -1.1992 0.0059 21 6 4.1680 -2.5370 0.0118 22 7 2.1570 -1.1473 0.0056 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6476 2.1375 0.0004 27 1 4.4386 2.8528 -1.0357 28 1 5.3484 2.3109 0.3949 29 1 3.8351 3.2258 0.5967 30 1 6.0911 -0.6059 0.6793 31 1 8.1438 1.0710 0.0540 32 1 8.2244 -0.4183 -0.9176 33 1 11.3190 3.1259 -4.4643 34 1 4.3322 -2.8565 1.0408 35 1 3.5467 -3.2707 -0.5019 36 1 5.1268 -2.4513 -0.4995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192553208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:42 Heat of formation + Delta-G solvation = -12.905852 kcal Electronic energy + Delta-G solvation = -19054.302240 eV Core-core repulsion = 16050.306645 eV Total energy + Delta-G solvation = -3003.995594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.99200 -38.99275 -35.24819 -34.06847 -32.48372 -32.41270 -29.56766 -28.93564 -27.62204 -26.12897 -25.47646 -21.96087 -21.44542 -20.15178 -18.23944 -17.38350 -16.99510 -16.35724 -15.02699 -14.90631 -14.84977 -14.76153 -14.30372 -13.75516 -13.43663 -13.33242 -13.23021 -12.95827 -12.79481 -12.64541 -12.28124 -12.19423 -12.03913 -11.76958 -11.59185 -11.10789 -11.07439 -10.82102 -10.19038 -9.90756 -9.78868 -9.35258 -9.19904 -9.11356 -8.32313 -8.28516 -6.57161 -6.26966 -3.98466 0.98936 1.24536 2.89165 2.89356 3.19169 3.24022 3.27697 3.57188 3.66009 4.14725 4.15323 4.56354 4.62592 4.92465 5.01743 5.08567 5.23934 5.36929 5.38925 5.41093 5.44738 5.48936 5.53146 5.58868 5.72024 5.76532 5.79963 5.95617 6.02865 6.07227 6.17859 6.30250 6.42051 6.84323 7.44700 7.54728 7.96196 8.29866 8.41968 9.18563 10.80391 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.039701 B = 0.003587 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.094836 B = 7804.148466 C = 8189.337656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.119 3.881 3 C -0.168 4.168 4 C -0.026 4.026 5 C -0.113 4.113 6 C 0.092 3.908 7 N -0.680 5.680 8 C 0.531 3.469 9 O -0.496 6.496 10 C -0.153 4.153 11 S -0.056 6.056 12 C -0.537 4.537 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.123 3.877 21 C -0.103 4.103 22 N -0.479 5.479 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.135 0.865 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.408 0.592 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.192 -5.890 11.242 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.019 4.019 3 C -0.188 4.188 4 C -0.035 4.035 5 C -0.170 4.170 6 C -0.004 4.004 7 N -0.330 5.330 8 C 0.318 3.682 9 O -0.368 6.368 10 C -0.304 4.304 11 S 0.170 5.830 12 C -0.685 4.685 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.017 4.017 21 C -0.161 4.161 22 N -0.191 5.191 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.153 0.847 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.245 0.755 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.518 -5.584 9.555 19.883 hybrid contribution 2.603 -0.149 1.553 3.035 sum -13.915 -5.734 11.108 18.706 Atomic orbital electron populations 1.20657 0.88840 1.03365 1.02788 1.21173 0.96858 0.88131 0.95753 1.21699 0.93425 0.99324 1.04394 1.20382 0.93841 0.95158 0.94163 1.20879 0.99269 0.92883 1.03941 1.18265 0.84283 0.93337 1.04470 1.43512 1.03434 1.53834 1.32239 1.20510 0.89541 0.77399 0.80717 1.90727 1.71246 1.42308 1.32483 1.23540 0.92580 1.06436 1.07842 1.85416 1.03845 1.66389 1.27305 1.22856 0.91082 1.40127 1.14456 0.90850 1.24994 0.99673 0.94422 0.94442 1.70010 1.35180 1.32030 1.13004 0.86160 0.82764 0.77886 0.78651 1.20230 1.20726 1.19664 1.21256 0.89235 0.94737 0.96496 1.20673 1.00180 0.92367 1.02851 1.67307 1.08388 1.29276 1.14086 0.90646 0.90796 0.90610 0.84717 0.88862 0.91516 0.91501 0.75506 0.88890 0.88913 0.92117 0.90486 0.90243 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.16 36.01 0.37 -0.48 16 2 C 0.12 1.46 6.78 -82.56 -0.56 0.90 16 3 C -0.17 -2.07 9.46 -39.47 -0.37 -2.45 16 4 C -0.03 -0.37 5.53 -104.14 -0.58 -0.94 16 5 C -0.11 -1.59 8.36 36.01 0.30 -1.29 16 6 C 0.09 1.33 5.80 -83.54 -0.48 0.84 16 7 N -0.68 -9.27 3.90 -9.77 -0.04 -9.31 16 8 C 0.53 9.45 6.09 -10.99 -0.07 9.38 16 9 O -0.50 -10.68 13.35 5.55 0.07 -10.61 16 10 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 11 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 12 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 16 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C 0.12 1.66 6.80 -82.37 -0.56 1.10 16 21 C -0.10 -1.09 9.87 36.01 0.36 -0.73 16 22 N -0.48 -6.63 10.18 -5.58 -0.06 -6.69 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 27 H 0.09 1.51 7.26 -51.93 -0.38 1.14 16 28 H 0.07 0.99 6.44 -51.93 -0.33 0.65 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.41 4.17 8.74 -40.82 -0.36 3.82 16 31 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.80 7.44 -51.93 -0.39 0.41 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -33.88 321.21 -7.66 -41.54 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.80 Total: 1.87 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.18 Total: -8.99 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.64 Total: -40.96 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.88 -7.66 -41.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192553208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.633 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds