Wall clock time and date at job start Tue Mar 31 2020 01:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38274 * 119.54402 * 2 1 4 4 C 1.38500 * 119.23212 * 180.29972 * 3 2 1 5 5 C 1.50703 * 120.81384 * 179.70992 * 4 3 2 6 6 C 1.39280 * 118.36231 * 359.43312 * 4 3 2 7 7 N 1.39950 * 120.48459 * 180.25466 * 6 4 3 8 8 C 1.34776 * 120.00545 * 306.19364 * 7 6 4 9 9 O 1.21290 * 119.99304 * 354.62552 * 8 7 6 10 10 C 1.50693 * 120.00430 * 174.63400 * 8 7 6 11 11 S 1.81003 * 109.47166 * 179.97438 * 10 8 7 12 12 C 1.76199 * 99.99955 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00406 * 359.97438 * 12 11 10 14 14 C 1.38799 * 119.99880 * 180.02562 * 12 11 10 15 15 N 1.31633 * 120.00218 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00056 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47174 * 89.99483 * 16 14 12 18 18 H 1.48499 * 109.47038 * 209.99705 * 16 14 12 19 19 H 1.48500 * 109.47076 * 329.99610 * 16 14 12 20 20 C 1.38845 * 119.02468 * 0.27364 * 6 4 3 21 21 C 1.50704 * 119.66476 * 179.97438 * 20 6 4 22 22 N 1.31818 * 120.66525 * 0.02713 * 20 6 4 23 23 H 1.09003 * 109.46693 * 270.28001 * 1 2 3 24 24 H 1.09000 * 109.46904 * 30.27855 * 1 2 3 25 25 H 1.08997 * 109.47561 * 150.27841 * 1 2 3 26 26 H 1.07998 * 120.37864 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47336 * 276.35669 * 5 4 3 28 28 H 1.09004 * 109.46956 * 156.36055 * 5 4 3 29 29 H 1.08991 * 109.47348 * 36.36359 * 5 4 3 30 30 H 0.97009 * 120.00077 * 126.19765 * 7 6 4 31 31 H 1.09002 * 109.46919 * 299.99369 * 10 8 7 32 32 H 1.09001 * 109.47161 * 59.99658 * 10 8 7 33 33 H 0.96999 * 120.00268 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.46659 * 90.24385 * 21 20 6 35 35 H 1.09005 * 109.46529 * 210.24420 * 21 20 6 36 36 H 1.08998 * 109.47472 * 330.23826 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1889 1.2030 0.0000 4 6 3.5738 1.1954 -0.0063 5 6 4.3528 2.4855 -0.0131 6 6 4.2288 -0.0337 -0.0003 7 7 5.6271 -0.0931 -0.0010 8 6 6.3291 0.5619 -0.9468 9 8 5.7494 1.1218 -1.8533 10 6 7.8340 0.5986 -0.8782 11 16 8.4789 1.5464 -2.2790 12 6 10.2073 1.4308 -1.9568 13 1 10.5605 0.8876 -1.0927 14 6 11.1150 2.0388 -2.8129 15 7 10.6846 2.7014 -3.8658 16 14 12.9474 1.9169 -2.4710 17 1 13.4975 0.7128 -3.1440 18 1 13.6296 3.1294 -2.9904 19 1 13.1718 1.8116 -1.0068 20 6 3.4742 -1.1992 0.0059 21 6 4.1680 -2.5370 0.0118 22 7 2.1570 -1.1473 0.0056 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6476 2.1375 0.0004 27 1 4.4386 2.8528 -1.0357 28 1 5.3484 2.3109 0.3949 29 1 3.8351 3.2258 0.5967 30 1 6.0911 -0.6059 0.6793 31 1 8.1438 1.0710 0.0540 32 1 8.2244 -0.4183 -0.9176 33 1 11.3190 3.1259 -4.4643 34 1 4.3322 -2.8565 1.0408 35 1 3.5467 -3.2707 -0.5019 36 1 5.1268 -2.4513 -0.4995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192553208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:41 Heat of formation + Delta-G solvation = -35.119195 kcal Electronic energy + Delta-G solvation = -19055.265483 eV Core-core repulsion = 16050.306645 eV Total energy + Delta-G solvation = -3004.958837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.09284 -40.26366 -36.45521 -35.06919 -34.58653 -33.49963 -30.93571 -29.84662 -28.66867 -27.72941 -27.00120 -23.02321 -22.52722 -21.34692 -19.98434 -18.76022 -18.18742 -17.70147 -16.87990 -16.28356 -16.13877 -15.85738 -15.76464 -15.04772 -14.71808 -14.44225 -14.28792 -14.12178 -13.94977 -13.85318 -13.39874 -13.17046 -13.12903 -12.94016 -12.89675 -12.69669 -12.61579 -12.54643 -11.75554 -11.36794 -11.20539 -11.14429 -10.46256 -10.28878 -10.23574 -9.34039 -8.66793 -8.35217 -6.12919 -0.02254 0.21063 1.24052 1.42441 1.45390 1.50429 1.56098 2.13062 2.26563 2.66836 2.99431 3.24875 3.30599 3.58708 3.67155 3.83541 4.07547 4.25873 4.29657 4.37107 4.48115 4.54132 4.58133 4.64578 4.68681 4.72466 4.83243 4.95463 5.11266 5.13859 5.20372 5.25791 5.37265 5.42221 5.80340 6.19546 6.30032 6.96823 7.06645 7.11697 8.73761 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.039701 B = 0.003587 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.094836 B = 7804.148466 C = 8189.337656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.114 3.886 3 C -0.172 4.172 4 C -0.043 4.043 5 C -0.107 4.107 6 C 0.067 3.933 7 N -0.655 5.655 8 C 0.537 3.463 9 O -0.539 6.539 10 C -0.129 4.129 11 S -0.143 6.143 12 C -0.546 4.546 13 H 0.084 0.916 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.257 1.257 20 C 0.117 3.883 21 C -0.101 4.101 22 N -0.497 5.497 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.161 0.839 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.426 0.574 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.271 0.729 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.491 -6.956 13.239 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.024 4.024 3 C -0.192 4.192 4 C -0.053 4.053 5 C -0.163 4.163 6 C -0.029 4.029 7 N -0.305 5.305 8 C 0.325 3.675 9 O -0.415 6.415 10 C -0.280 4.280 11 S 0.084 5.916 12 C -0.694 4.694 13 H 0.102 0.898 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.819 3.181 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.181 1.181 20 C -0.023 4.023 21 C -0.159 4.159 22 N -0.209 5.209 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.178 0.822 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.266 0.734 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.834 -6.686 11.601 21.510 hybrid contribution 2.516 0.137 1.003 2.712 sum -14.319 -6.550 12.604 20.169 Atomic orbital electron populations 1.20766 0.86150 1.04277 1.04192 1.21834 0.98705 0.87740 0.94072 1.22003 0.92799 1.00640 1.03710 1.20598 0.94930 0.95055 0.94699 1.20775 0.99135 0.93804 1.02594 1.18435 0.84112 0.94004 1.06316 1.43095 1.03457 1.52631 1.31359 1.20223 0.88994 0.77392 0.80910 1.90722 1.71722 1.44503 1.34512 1.23355 0.93372 1.06271 1.04992 1.85585 1.04901 1.68818 1.32275 1.23211 0.91390 1.40042 1.14774 0.89782 1.26101 1.05117 0.93809 0.94039 1.70175 1.37014 1.33280 1.14294 0.84974 0.75960 0.77999 0.79188 1.19393 1.20435 1.18124 1.21668 0.89423 0.95549 0.95613 1.20745 0.99742 0.90951 1.04424 1.67425 1.08481 1.30072 1.14876 0.88846 0.88906 0.90680 0.82164 0.91634 0.92738 0.88831 0.73411 0.86786 0.86732 0.92015 0.88044 0.90069 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.16 71.24 0.72 -0.68 16 2 C 0.11 2.60 6.78 42.56 0.29 2.89 16 3 C -0.17 -3.96 9.46 22.34 0.21 -3.75 16 4 C -0.04 -1.21 5.53 -19.55 -0.11 -1.32 16 5 C -0.11 -2.99 8.36 71.24 0.60 -2.40 16 6 C 0.07 1.86 5.80 38.24 0.22 2.08 16 7 N -0.65 -17.14 3.90 -303.20 -1.18 -18.32 16 8 C 0.54 19.03 6.09 87.65 0.53 19.57 16 9 O -0.54 -23.88 13.35 -3.06 -0.04 -23.92 16 10 C -0.13 -4.82 6.16 71.23 0.44 -4.38 16 11 S -0.14 -7.66 20.57 -56.49 -1.16 -8.82 16 12 C -0.55 -30.38 9.50 67.95 0.65 -29.74 16 13 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 14 C 0.01 0.79 5.49 84.86 0.47 1.26 16 15 N -0.91 -55.18 13.22 21.65 0.29 -54.89 16 16 Si 1.00 42.84 29.55 68.60 2.03 44.86 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 C 0.12 3.02 6.80 42.71 0.29 3.31 16 21 C -0.10 -1.95 9.87 71.24 0.70 -1.24 16 22 N -0.50 -13.00 10.18 -171.58 -1.75 -14.75 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.07 2.22 7.26 -2.39 -0.02 2.20 16 28 H 0.05 1.62 6.44 -2.38 -0.02 1.60 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.43 7.85 8.74 -92.70 -0.81 7.04 16 31 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.07 1.45 7.44 -2.39 -0.02 1.43 16 Total: -1.00 -75.46 321.21 3.48 -71.97 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.29 Total: 18.27 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 5.01 Total: -14.39 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.64 Total: -87.97 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.04 Total: -23.92 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Total: -75.46 3.48 -71.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192553208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.854 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds