Wall clock time and date at job start Tue Mar 31 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47075 * 51.72008 * 3 2 1 5 5 C 1.36641 * 119.99770 * 264.15717 * 4 3 2 6 6 H 1.08004 * 119.99863 * 212.70535 * 5 4 3 7 7 C 1.39193 * 120.00218 * 32.70516 * 5 4 3 8 8 N 1.31265 * 120.00162 * 5.93529 * 7 5 4 9 9 Si 1.86799 * 119.99890 * 185.94014 * 7 5 4 10 10 H 1.48495 * 109.47458 * 60.00009 * 9 7 5 11 11 H 1.48506 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47380 * 299.99555 * 9 7 5 13 13 C 1.34776 * 119.99860 * 84.16051 * 4 3 2 14 14 O 1.21608 * 119.99893 * 4.98838 * 13 4 3 15 15 C 1.47711 * 119.99750 * 184.98382 * 13 4 3 16 16 N 1.32316 * 120.16764 * 75.16626 * 15 13 4 17 17 C 1.32026 * 122.66475 * 180.02562 * 16 15 13 18 18 C 1.36695 * 122.03902 * 359.41359 * 17 16 15 19 19 C 1.40572 * 118.86493 * 0.86035 * 18 17 16 20 20 C 1.40315 * 122.21068 * 179.12505 * 19 18 17 21 21 C 1.36230 * 119.45245 * 180.02562 * 20 19 18 22 22 C 1.39359 * 120.99437 * 0.02562 * 21 20 19 23 23 C 1.36300 * 121.06927 * 0.02562 * 22 21 20 24 24 C 1.40035 * 119.54558 * 0.25776 * 23 22 21 25 25 H 4.40641 * 5.51356 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47012 * 291.72138 * 3 2 1 27 27 H 1.08999 * 109.46956 * 171.72417 * 3 2 1 28 28 H 0.96996 * 120.00290 * 179.97438 * 8 7 5 29 29 H 1.08002 * 118.97800 * 180.02562 * 17 16 15 30 30 H 1.07996 * 120.56744 * 180.02562 * 18 17 16 31 31 H 1.07998 * 120.27355 * 0.04080 * 20 19 18 32 32 H 1.07999 * 119.50462 * 180.02562 * 21 20 19 33 33 H 1.07996 * 119.46320 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.22724 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8548 -1.0842 5 6 3.4766 -2.1529 -0.8290 6 1 4.2751 -2.6205 -1.3860 7 6 2.7957 -2.8726 0.1487 8 7 1.7512 -2.3455 0.7438 9 14 3.3685 -4.5887 0.6140 10 1 4.7627 -4.5246 1.1213 11 1 2.4820 -5.1365 1.6720 12 1 3.3165 -5.4689 -0.5808 13 6 3.2471 -0.3613 -2.3334 14 8 3.0301 0.8166 -2.5436 15 6 3.6340 -1.2514 -3.4469 16 7 2.7588 -2.1074 -3.9489 17 6 3.0516 -2.9254 -4.9430 18 6 4.2842 -2.9363 -5.5340 19 6 5.2742 -2.0609 -5.0549 20 6 6.5679 -2.0261 -5.5973 21 6 7.4840 -1.1553 -5.0892 22 6 7.1557 -0.2997 -4.0393 23 6 5.9089 -0.3083 -3.4886 24 6 4.9426 -1.1942 -3.9810 25 1 -1.0499 0.0000 -0.0003 26 1 3.0095 -0.3795 0.9547 27 1 3.0088 1.0178 -0.1479 28 1 1.2765 -2.8471 1.4249 29 1 2.2908 -3.6000 -5.3069 30 1 4.4979 -3.6154 -6.3461 31 1 6.8349 -2.6840 -6.4111 32 1 8.4798 -1.1275 -5.5064 33 1 7.9015 0.3805 -3.6553 34 1 5.6693 0.3604 -2.6750 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252497386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:14 Heat of formation + Delta-G solvation = 92.142280 kcal Electronic energy + Delta-G solvation = -21122.878994 eV Core-core repulsion = 17987.994677 eV Total energy + Delta-G solvation = -3134.884317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57205 -38.44332 -36.90801 -35.16145 -32.67963 -31.86904 -31.29609 -30.86395 -29.36568 -26.67879 -25.11014 -23.86385 -23.19989 -22.21915 -19.63585 -18.29012 -17.46824 -17.13136 -16.71453 -16.15310 -15.61614 -14.68814 -14.53520 -14.47965 -13.93039 -13.66128 -13.62468 -13.41025 -13.05499 -12.49402 -12.05818 -12.01346 -11.75794 -11.61493 -11.55221 -11.13345 -10.93339 -10.80975 -10.52795 -9.82919 -9.39579 -9.35576 -9.08942 -8.81007 -8.68069 -8.54613 -7.88938 -7.70538 -6.35834 -4.12092 0.62459 1.23127 2.18134 3.08267 3.17010 3.17886 3.32853 3.52642 3.89311 4.11686 4.35826 4.43011 4.58203 4.80737 4.92253 5.01635 5.09030 5.23163 5.38692 5.39712 5.52321 5.59069 5.74219 5.99724 6.04106 6.05387 6.28862 6.33906 6.59755 6.60612 6.66080 6.77436 6.96662 7.08840 7.21623 7.32365 7.63625 8.22712 8.47089 8.94717 9.08483 9.25439 9.67617 10.59655 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006985 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.759371 B = 4007.740422 C = 4552.276708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.097 4.097 3 C 0.243 3.757 4 N -0.413 5.413 5 C -0.341 4.341 6 H 0.089 0.911 7 C 0.049 3.951 8 N -0.846 5.846 9 Si 0.920 3.080 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.514 3.486 14 O -0.588 6.588 15 C 0.203 3.797 16 N -0.454 5.454 17 C 0.090 3.910 18 C -0.175 4.175 19 C -0.021 4.021 20 C -0.122 4.122 21 C -0.098 4.098 22 C -0.134 4.134 23 C -0.064 4.064 24 C -0.094 4.094 25 H 0.196 0.804 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.273 0.727 29 H 0.151 0.849 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.281 -1.329 -7.166 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.099 4.099 3 C 0.121 3.879 4 N -0.129 5.129 5 C -0.469 4.469 6 H 0.107 0.893 7 C -0.159 4.159 8 N -0.480 5.480 9 Si 0.746 3.254 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.301 3.699 14 O -0.473 6.473 15 C 0.050 3.950 16 N -0.164 5.164 17 C -0.055 4.055 18 C -0.195 4.195 19 C -0.026 4.026 20 C -0.140 4.140 21 C -0.118 4.118 22 C -0.152 4.152 23 C -0.084 4.084 24 C -0.097 4.097 25 H 0.213 0.787 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.169 0.831 30 H 0.151 0.849 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.158 -0.940 -6.773 9.900 hybrid contribution 0.700 -1.305 -0.113 1.485 sum 7.858 -2.245 -6.887 10.687 Atomic orbital electron populations 1.24098 0.95232 1.06354 1.02958 1.22822 0.94092 0.95108 0.97830 1.18055 0.84694 0.93252 0.91885 1.43335 1.54147 1.11035 1.04384 1.19309 1.17691 0.87105 1.22786 0.89289 1.25459 0.94157 0.99285 0.96995 1.69876 1.16189 1.37719 1.24262 0.86108 0.78643 0.82147 0.78507 1.19688 1.20664 1.19740 1.17662 0.83152 0.86772 0.82352 1.90696 1.56780 1.16260 1.83542 1.21511 0.88386 0.91312 0.93840 1.67497 1.35783 1.03237 1.09890 1.22246 0.95473 0.96000 0.91815 1.21897 0.94534 1.00744 1.02338 1.18096 0.94575 0.95309 0.94630 1.20869 0.92246 1.00129 1.00714 1.20906 0.99250 0.95383 0.96231 1.20860 0.96727 1.00137 0.97467 1.21071 0.92481 0.96304 0.98533 1.18848 0.94908 0.98388 0.97509 0.78683 0.88170 0.91213 0.91605 0.83145 0.84873 0.85487 0.85966 0.85775 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.25 19.16 29.55 0.57 -5.69 16 2 C -0.10 -2.43 11.03 -37.12 -0.41 -2.84 16 3 C 0.24 5.88 5.11 -6.83 -0.03 5.85 16 4 N -0.41 -10.56 2.56 -119.08 -0.30 -10.87 16 5 C -0.34 -8.76 8.76 -15.05 -0.13 -8.89 16 6 H 0.09 2.28 7.25 -52.48 -0.38 1.90 16 7 C 0.05 1.24 5.16 -17.44 -0.09 1.15 16 8 N -0.85 -22.01 9.19 55.51 0.51 -21.50 16 9 Si 0.92 19.77 29.56 -169.99 -5.02 14.75 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.51 13.10 5.94 -12.39 -0.07 13.03 16 14 O -0.59 -15.95 16.73 5.27 0.09 -15.86 16 15 C 0.20 4.69 4.98 -82.57 -0.41 4.28 16 16 N -0.45 -10.28 10.24 -9.83 -0.10 -10.38 16 17 C 0.09 1.61 11.06 -18.03 -0.20 1.41 16 18 C -0.18 -2.70 9.88 -39.26 -0.39 -3.08 16 19 C -0.02 -0.35 5.75 -106.82 -0.61 -0.97 16 20 C -0.12 -1.62 9.82 -39.52 -0.39 -2.01 16 21 C -0.10 -1.22 9.95 -39.89 -0.40 -1.62 16 22 C -0.13 -1.87 9.95 -39.86 -0.40 -2.27 16 23 C -0.06 -1.14 9.42 -39.61 -0.37 -1.51 16 24 C -0.09 -1.86 5.76 -106.59 -0.61 -2.47 16 25 H 0.20 3.78 7.80 -54.10 -0.42 3.36 16 26 H 0.10 2.38 7.10 -51.93 -0.37 2.01 16 27 H 0.07 1.58 7.54 -51.93 -0.39 1.19 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.13 2.46 7.22 -52.49 -0.38 2.08 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -31.61 306.83 -7.35 -38.96 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.19 Total: 5.91 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.96 Total: -5.63 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.10 Total: -42.76 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.61 -7.35 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252497386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.107 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds