Wall clock time and date at job start Tue Mar 31 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47075 * 51.72008 * 3 2 1 5 5 C 1.36641 * 119.99770 * 264.15717 * 4 3 2 6 6 H 1.08004 * 119.99863 * 212.70535 * 5 4 3 7 7 C 1.39193 * 120.00218 * 32.70516 * 5 4 3 8 8 N 1.31265 * 120.00162 * 5.93529 * 7 5 4 9 9 Si 1.86799 * 119.99890 * 185.94014 * 7 5 4 10 10 H 1.48495 * 109.47458 * 60.00009 * 9 7 5 11 11 H 1.48506 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47380 * 299.99555 * 9 7 5 13 13 C 1.34776 * 119.99860 * 84.16051 * 4 3 2 14 14 O 1.21608 * 119.99893 * 4.98838 * 13 4 3 15 15 C 1.47711 * 119.99750 * 184.98382 * 13 4 3 16 16 N 1.32316 * 120.16764 * 75.16626 * 15 13 4 17 17 C 1.32026 * 122.66475 * 180.02562 * 16 15 13 18 18 C 1.36695 * 122.03902 * 359.41359 * 17 16 15 19 19 C 1.40572 * 118.86493 * 0.86035 * 18 17 16 20 20 C 1.40315 * 122.21068 * 179.12505 * 19 18 17 21 21 C 1.36230 * 119.45245 * 180.02562 * 20 19 18 22 22 C 1.39359 * 120.99437 * 0.02562 * 21 20 19 23 23 C 1.36300 * 121.06927 * 0.02562 * 22 21 20 24 24 C 1.40035 * 119.54558 * 0.25776 * 23 22 21 25 25 H 4.40641 * 5.51356 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47012 * 291.72138 * 3 2 1 27 27 H 1.08999 * 109.46956 * 171.72417 * 3 2 1 28 28 H 0.96996 * 120.00290 * 179.97438 * 8 7 5 29 29 H 1.08002 * 118.97800 * 180.02562 * 17 16 15 30 30 H 1.07996 * 120.56744 * 180.02562 * 18 17 16 31 31 H 1.07998 * 120.27355 * 0.04080 * 20 19 18 32 32 H 1.07999 * 119.50462 * 180.02562 * 21 20 19 33 33 H 1.07996 * 119.46320 * 179.97438 * 22 21 20 34 34 H 1.08000 * 120.22724 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8548 -1.0842 5 6 3.4766 -2.1529 -0.8290 6 1 4.2751 -2.6205 -1.3860 7 6 2.7957 -2.8726 0.1487 8 7 1.7512 -2.3455 0.7438 9 14 3.3685 -4.5887 0.6140 10 1 4.7627 -4.5246 1.1213 11 1 2.4820 -5.1365 1.6720 12 1 3.3165 -5.4689 -0.5808 13 6 3.2471 -0.3613 -2.3334 14 8 3.0301 0.8166 -2.5436 15 6 3.6340 -1.2514 -3.4469 16 7 2.7588 -2.1074 -3.9489 17 6 3.0516 -2.9254 -4.9430 18 6 4.2842 -2.9363 -5.5340 19 6 5.2742 -2.0609 -5.0549 20 6 6.5679 -2.0261 -5.5973 21 6 7.4840 -1.1553 -5.0892 22 6 7.1557 -0.2997 -4.0393 23 6 5.9089 -0.3083 -3.4886 24 6 4.9426 -1.1942 -3.9810 25 1 -1.0499 0.0000 -0.0003 26 1 3.0095 -0.3795 0.9547 27 1 3.0088 1.0178 -0.1479 28 1 1.2765 -2.8471 1.4249 29 1 2.2908 -3.6000 -5.3069 30 1 4.4979 -3.6154 -6.3461 31 1 6.8349 -2.6840 -6.4111 32 1 8.4798 -1.1275 -5.5064 33 1 7.9015 0.3805 -3.6553 34 1 5.6693 0.3604 -2.6750 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252497386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:14 Heat of formation + Delta-G solvation = 73.126344 kcal Electronic energy + Delta-G solvation = -21123.703586 eV Core-core repulsion = 17987.994677 eV Total energy + Delta-G solvation = -3135.708910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96021 -40.22628 -38.19249 -37.11192 -34.09934 -33.77085 -33.14472 -32.12062 -30.65094 -28.52883 -26.96689 -25.35011 -24.44750 -23.57131 -21.36053 -20.00907 -19.08265 -18.49203 -18.26778 -17.93760 -17.01800 -16.49207 -16.17777 -15.88374 -15.50590 -15.21072 -15.04190 -14.69979 -14.56560 -13.99170 -13.91412 -13.72089 -13.43407 -13.04975 -12.90673 -12.74865 -12.67515 -12.24628 -12.10475 -11.31614 -11.26996 -11.06837 -10.83116 -10.60187 -10.22427 -10.04731 -9.85616 -8.95189 -8.27754 -6.11105 -0.66540 -0.00523 0.90195 1.35068 1.39609 1.49386 1.65313 2.04208 2.17178 2.28835 2.43582 2.86123 3.03577 3.13796 3.63128 3.72931 3.88283 3.90504 3.96080 4.05436 4.24856 4.34264 4.50324 4.53224 4.71964 4.81908 4.82908 4.89133 5.06169 5.16900 5.31618 5.38367 5.46295 5.50182 5.69560 5.72578 5.96559 6.27275 6.97458 7.06441 7.17466 7.32405 7.75062 8.67333 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006985 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.759371 B = 4007.740422 C = 4552.276708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.140 4.140 3 C 0.243 3.757 4 N -0.422 5.422 5 C -0.352 4.352 6 H 0.082 0.918 7 C 0.009 3.991 8 N -0.869 5.869 9 Si 0.985 3.015 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.275 1.275 13 C 0.509 3.491 14 O -0.623 6.623 15 C 0.153 3.847 16 N -0.493 5.493 17 C 0.054 3.946 18 C -0.137 4.137 19 C -0.045 4.045 20 C -0.105 4.105 21 C -0.095 4.095 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.108 4.108 25 H 0.232 0.768 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.273 0.727 29 H 0.179 0.821 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.765 -3.562 -9.532 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.142 4.142 3 C 0.121 3.879 4 N -0.138 5.138 5 C -0.479 4.479 6 H 0.100 0.900 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.808 3.192 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.200 1.200 13 C 0.297 3.703 14 O -0.511 6.511 15 C 0.001 3.999 16 N -0.204 5.204 17 C -0.091 4.091 18 C -0.156 4.156 19 C -0.051 4.051 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.111 4.111 25 H 0.249 0.751 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.196 0.804 30 H 0.204 0.796 31 H 0.192 0.808 32 H 0.189 0.811 33 H 0.171 0.829 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.652 -3.168 -9.132 13.659 hybrid contribution 0.032 -0.583 0.477 0.754 sum 9.684 -3.751 -8.654 13.518 Atomic orbital electron populations 1.25002 0.96267 1.04799 1.01379 1.23264 0.94970 0.96609 0.99362 1.18027 0.84941 0.93275 0.91628 1.43516 1.54180 1.11287 1.04793 1.19378 1.17920 0.87462 1.23187 0.89980 1.26249 0.94128 1.02702 0.96584 1.70010 1.16977 1.38873 1.24503 0.85120 0.78680 0.77409 0.77945 1.18532 1.20122 1.19992 1.18213 0.82133 0.86874 0.83086 1.90615 1.58236 1.17877 1.84326 1.21108 0.90627 0.93350 0.94852 1.67287 1.37112 1.04167 1.11803 1.22752 0.97861 0.96534 0.91948 1.22451 0.92626 0.99126 1.01429 1.18557 0.96886 0.95327 0.94300 1.21411 0.90162 0.99979 1.00675 1.21452 1.01289 0.93791 0.94888 1.21311 0.95230 0.99525 0.96460 1.20993 0.94505 0.97763 1.00065 1.19006 0.93798 0.99626 0.98666 0.75129 0.88520 0.91002 0.91659 0.80447 0.79575 0.80836 0.81079 0.82858 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.20 19.16 74.32 1.42 -10.78 16 2 C -0.14 -7.38 11.03 31.12 0.34 -7.04 16 3 C 0.24 12.61 5.11 84.57 0.43 13.05 16 4 N -0.42 -23.08 2.56 -648.90 -1.66 -24.74 16 5 C -0.35 -18.97 8.76 84.17 0.74 -18.23 16 6 H 0.08 4.43 7.25 -2.91 -0.02 4.41 16 7 C 0.01 0.45 5.16 85.01 0.44 0.89 16 8 N -0.87 -46.55 9.19 21.70 0.20 -46.35 16 9 Si 0.99 41.05 29.56 68.60 2.03 43.08 16 10 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 C 0.51 27.95 5.94 86.75 0.52 28.47 16 14 O -0.62 -36.66 16.73 -4.06 -0.07 -36.73 16 15 C 0.15 7.46 4.98 42.37 0.21 7.67 16 16 N -0.49 -23.22 10.24 -185.01 -1.89 -25.11 16 17 C 0.05 1.90 11.06 84.30 0.93 2.83 16 18 C -0.14 -3.77 9.88 22.48 0.22 -3.55 16 19 C -0.05 -1.41 5.75 -21.29 -0.12 -1.53 16 20 C -0.10 -2.22 9.82 22.31 0.22 -2.00 16 21 C -0.10 -1.86 9.95 22.07 0.22 -1.64 16 22 C -0.11 -2.75 9.95 22.09 0.22 -2.53 16 23 C -0.11 -4.15 9.42 22.25 0.21 -3.95 16 24 C -0.11 -4.38 5.76 -21.14 -0.12 -4.50 16 25 H 0.23 8.78 7.80 -4.42 -0.03 8.74 16 26 H 0.10 4.93 7.10 -2.39 -0.02 4.91 16 27 H 0.07 3.56 7.54 -2.39 -0.02 3.55 16 28 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.10 4.26 7.22 -2.91 -0.02 4.24 16 Total: -1.00 -75.56 306.83 5.60 -69.96 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.12 Total: 22.75 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.88 Total: -2.85 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -3.36 Total: -96.21 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.07 Total: -36.73 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -75.56 5.60 -69.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252497386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.086 kcal (2) G-P(sol) polarization free energy of solvation -75.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds