Wall clock time and date at job start Tue Mar 31 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29357 * 124.67260 * 2 1 4 4 C 1.30955 * 117.48957 * 180.26754 * 3 2 1 5 5 C 1.37068 * 113.85207 * 359.97438 * 4 3 2 6 6 C 1.41726 * 126.19110 * 179.97438 * 5 4 3 7 7 C 1.35562 * 119.99941 * 131.74533 * 6 5 4 8 8 C 1.41552 * 119.99789 * 345.58175 * 7 6 5 9 9 O 1.21777 * 120.00111 * 353.26701 * 8 7 6 10 10 N 1.34777 * 119.99814 * 173.26333 * 8 7 6 11 11 C 1.46501 * 119.99899 * 0.02562 * 10 8 7 12 12 C 1.46498 * 120.00120 * 179.97438 * 10 8 7 13 13 H 1.08996 * 109.47061 * 0.02562 * 12 10 8 14 14 C 1.52999 * 109.47101 * 120.00219 * 12 10 8 15 15 C 1.50702 * 109.47105 * 240.00285 * 12 10 8 16 16 H 1.07997 * 120.00162 * 0.02562 * 15 12 10 17 17 C 1.37874 * 119.99760 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00247 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 120.00016 * 0.02562 * 17 15 12 20 20 H 1.48504 * 109.47389 * 89.99865 * 19 17 15 21 21 H 1.48505 * 109.47052 * 209.99687 * 19 17 15 22 22 H 1.48503 * 109.47160 * 329.99443 * 19 17 15 23 23 S 1.70918 * 124.67529 * 180.30512 * 2 1 3 24 24 H 1.08997 * 109.47363 * 269.69481 * 1 2 3 25 25 H 1.08997 * 109.47214 * 29.69797 * 1 2 3 26 26 H 1.09004 * 109.46935 * 149.69274 * 1 2 3 27 27 H 1.07998 * 123.07394 * 180.02562 * 4 3 2 28 28 H 1.07996 * 119.99761 * 311.74246 * 6 5 4 29 29 H 1.07990 * 119.99895 * 165.58089 * 7 6 5 30 30 H 1.09005 * 109.47024 * 89.99718 * 11 10 8 31 31 H 1.08994 * 109.47181 * 209.99866 * 11 10 8 32 32 H 1.08996 * 109.47494 * 329.99747 * 11 10 8 33 33 H 1.09004 * 109.47260 * 300.00373 * 14 12 10 34 34 H 1.09010 * 109.46828 * 59.99972 * 14 12 10 35 35 H 1.08995 * 109.47108 * 179.97438 * 14 12 10 36 36 H 0.96993 * 120.00135 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5422 0.9001 -0.0054 5 6 3.9353 -0.4130 -0.0099 6 6 5.2711 -0.8866 -0.0166 7 6 5.6525 -1.8516 0.8557 8 6 4.8293 -2.1711 1.9620 9 8 3.8421 -1.4992 2.2005 10 7 5.1382 -3.2189 2.7514 11 6 6.3262 -4.0269 2.4647 12 6 4.2866 -3.5492 3.8968 13 1 3.4583 -2.8427 3.9494 14 6 3.7368 -4.9674 3.7313 15 6 5.0970 -3.4694 5.1649 16 1 6.1417 -3.1992 5.1219 17 6 4.5043 -3.7403 6.3799 18 7 5.2116 -3.6711 7.4865 19 14 2.6971 -4.2070 6.4542 20 1 2.5614 -5.6814 6.3401 21 1 2.1220 -3.7555 7.7468 22 1 1.9710 -3.5549 5.3348 23 16 2.4794 -1.4056 -0.0075 24 1 -0.3634 -0.0055 1.0276 25 1 -0.3633 0.8926 -0.5091 26 1 -0.3633 -0.8873 -0.5186 27 1 4.2401 1.7243 -0.0055 28 1 5.9851 -0.4786 -0.7167 29 1 6.5843 -2.3767 0.7065 30 1 7.1847 -3.6104 2.9918 31 1 6.1577 -5.0512 2.7970 32 1 6.5200 -4.0201 1.3922 33 1 3.1507 -5.0252 2.8141 34 1 4.5650 -5.6742 3.6784 35 1 3.1036 -5.2133 4.5837 36 1 4.7947 -3.8621 8.3412 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254997782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:30 Heat of formation + Delta-G solvation = 26.482142 kcal Electronic energy + Delta-G solvation = -19763.569084 eV Core-core repulsion = 16761.281481 eV Total energy + Delta-G solvation = -3002.287603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15710 -40.32492 -37.46798 -35.26882 -34.77334 -32.74094 -31.92470 -28.85431 -27.67448 -27.14243 -25.40079 -24.37804 -22.09166 -20.75729 -19.60214 -18.96867 -18.41445 -18.17340 -17.27353 -16.62950 -15.90568 -15.83576 -15.76491 -14.96323 -14.85291 -14.72828 -14.33823 -14.10347 -13.87256 -13.73348 -13.47213 -13.44740 -13.10872 -13.01587 -12.84891 -12.58694 -12.48684 -12.06042 -11.60306 -11.35832 -11.19541 -10.81552 -10.65086 -10.44804 -9.75838 -9.24681 -9.08940 -8.36884 -6.40904 -0.74765 0.40570 0.68709 1.02468 1.23072 1.32866 1.41420 1.91703 2.25424 2.38833 2.56786 2.98762 3.35430 3.93641 4.02854 4.17107 4.37608 4.43300 4.45344 4.55111 4.60224 4.62052 4.63339 4.65212 4.77412 4.97266 4.98874 5.07578 5.13440 5.16901 5.33191 5.45206 5.50001 5.76554 6.21298 6.61379 6.79946 6.83882 7.21402 7.42814 8.79466 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.005735 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.010800 B = 4880.810491 C = 5602.950193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.010 3.990 3 N -0.508 5.508 4 C 0.045 3.955 5 C -0.216 4.216 6 C 0.020 3.980 7 C -0.216 4.216 8 C 0.516 3.484 9 O -0.586 6.586 10 N -0.593 5.593 11 C 0.082 3.918 12 C 0.234 3.766 13 H 0.030 0.970 14 C -0.153 4.153 15 C -0.524 4.524 16 H 0.042 0.958 17 C 0.021 3.979 18 N -0.941 5.941 19 Si 0.941 3.059 20 H -0.252 1.252 21 H -0.297 1.297 22 H -0.262 1.262 23 S 0.189 5.811 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.194 0.806 28 H 0.192 0.808 29 H 0.172 0.828 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 1.191 -20.427 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.263 4.263 3 N -0.223 5.223 4 C -0.110 4.110 5 C -0.337 4.337 6 C -0.002 4.002 7 C -0.239 4.239 8 C 0.309 3.691 9 O -0.470 6.470 10 N -0.323 5.323 11 C -0.060 4.060 12 C 0.130 3.870 13 H 0.048 0.952 14 C -0.211 4.211 15 C -0.563 4.563 16 H 0.060 0.940 17 C -0.178 4.178 18 N -0.581 5.581 19 Si 0.768 3.232 20 H -0.177 1.177 21 H -0.225 1.225 22 H -0.187 1.187 23 S 0.449 5.551 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.210 0.790 28 H 0.209 0.791 29 H 0.190 0.810 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.988 0.881 -20.111 20.522 hybrid contribution 0.215 0.633 1.246 1.414 sum -3.774 1.514 -18.866 19.299 Atomic orbital electron populations 1.20554 0.83490 1.05359 1.04209 1.27651 1.03210 0.91393 1.04051 1.65921 1.06015 1.32367 1.18039 1.22646 0.91070 0.95523 1.01775 1.23990 0.99393 0.96841 1.13520 1.21054 0.91318 0.91462 0.96317 1.22546 1.03513 1.02435 0.95451 1.17920 0.85629 0.80407 0.85121 1.90860 1.30170 1.51495 1.74443 1.47908 1.27151 1.29545 1.27697 1.21858 0.86293 0.95861 1.02013 1.18879 0.90665 0.93469 0.84003 0.95218 1.22302 1.00703 0.98223 0.99823 1.21399 0.97367 1.46601 0.90905 0.93980 1.25663 1.02053 0.94937 0.95098 1.70006 1.38415 1.50870 0.98789 0.85976 0.80741 0.79621 0.76819 1.17749 1.22466 1.18721 1.83605 0.97058 1.11660 1.62762 0.89834 0.88427 0.88188 0.78957 0.79147 0.81025 0.93678 0.90882 0.87795 0.92436 0.91109 0.94169 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.46 71.24 0.74 -0.83 16 2 C 0.01 0.29 7.37 88.47 0.65 0.94 16 3 N -0.51 -16.22 10.50 -189.29 -1.99 -18.21 16 4 C 0.05 1.32 11.38 84.55 0.96 2.28 16 5 C -0.22 -6.17 4.36 22.86 0.10 -6.07 16 6 C 0.02 0.45 9.90 22.51 0.22 0.67 16 7 C -0.22 -5.61 9.00 22.47 0.20 -5.41 16 8 C 0.52 19.66 7.00 85.06 0.60 20.25 16 9 O -0.59 -26.57 11.69 -4.60 -0.05 -26.63 16 10 N -0.59 -23.62 2.75 -837.47 -2.31 -25.92 16 11 C 0.08 2.46 9.31 127.77 1.19 3.65 16 12 C 0.23 11.24 2.23 44.25 0.10 11.34 16 13 H 0.03 1.63 5.95 -2.39 -0.01 1.62 16 14 C -0.15 -6.26 8.65 71.98 0.62 -5.64 16 15 C -0.52 -29.80 8.95 25.60 0.23 -29.57 16 16 H 0.04 2.62 7.89 -2.91 -0.02 2.60 16 17 C 0.02 1.22 5.45 84.65 0.46 1.68 16 18 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 19 Si 0.94 45.62 24.37 68.60 1.67 47.30 16 20 H -0.25 -11.14 6.87 99.48 0.68 -10.46 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 22 H -0.26 -12.57 6.53 99.48 0.65 -11.92 16 23 S 0.19 5.62 20.33 -56.49 -1.15 4.47 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.19 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16 29 H 0.17 3.10 6.21 -2.92 -0.02 3.08 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 2.18 6.43 -2.39 -0.02 2.17 16 32 H 0.10 2.09 6.18 -2.39 -0.01 2.08 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.07 2.66 6.67 -2.38 -0.02 2.64 16 35 H 0.04 1.71 3.27 -2.39 -0.01 1.71 16 36 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -77.67 305.91 3.57 -74.10 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.02 Total: 9.82 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 6.08 Total: -6.70 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -3.99 Total: -102.35 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.67 Total: 47.30 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.15 Total: 4.47 kcal Total: -77.67 3.57 -74.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254997782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.577 kcal (2) G-P(sol) polarization free energy of solvation -77.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds