Wall clock time and date at job start Tue Mar 31 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29356 * 124.67713 * 2 1 4 4 C 1.30959 * 117.49415 * 179.72652 * 3 2 1 5 5 C 1.37067 * 113.84599 * 0.51603 * 4 3 2 6 6 C 1.41728 * 126.18943 * 179.79006 * 5 4 3 7 7 C 1.35558 * 119.99820 * 224.46163 * 6 5 4 8 8 C 1.41554 * 120.00061 * 9.66029 * 7 6 5 9 9 O 1.21775 * 119.99989 * 6.61318 * 8 7 6 10 10 N 1.34773 * 119.99607 * 186.61205 * 8 7 6 11 11 C 1.46497 * 120.00602 * 359.97438 * 10 8 7 12 12 C 1.46509 * 119.99496 * 180.02562 * 10 8 7 13 13 H 1.09003 * 109.47019 * 359.97438 * 12 10 8 14 14 C 1.52999 * 109.47059 * 239.99855 * 12 10 8 15 15 C 1.50700 * 109.46838 * 119.99960 * 12 10 8 16 16 H 1.07994 * 120.00624 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99674 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00394 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 120.00094 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46836 * 89.99773 * 19 17 15 21 21 H 1.48494 * 109.47239 * 209.99915 * 19 17 15 22 22 H 1.48500 * 109.46905 * 330.00501 * 19 17 15 23 23 S 1.70918 * 124.67438 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47045 * 269.98273 * 1 2 3 25 25 H 1.09001 * 109.47031 * 29.98167 * 1 2 3 26 26 H 1.08998 * 109.47083 * 149.98071 * 1 2 3 27 27 H 1.08003 * 123.07379 * 180.34609 * 4 3 2 28 28 H 1.07996 * 119.99864 * 44.46359 * 6 5 4 29 29 H 1.08002 * 119.99928 * 189.66319 * 7 6 5 30 30 H 1.09003 * 109.47256 * 270.00153 * 11 10 8 31 31 H 1.09003 * 109.47002 * 30.00349 * 11 10 8 32 32 H 1.08999 * 109.47272 * 150.00403 * 11 10 8 33 33 H 1.09002 * 109.46994 * 300.00393 * 14 12 10 34 34 H 1.09001 * 109.47224 * 59.99651 * 14 12 10 35 35 H 1.08993 * 109.47315 * 180.02562 * 14 12 10 36 36 H 0.96997 * 120.00578 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5423 0.9000 0.0055 5 6 3.9353 -0.4130 -0.0006 6 6 5.2711 -0.8867 -0.0010 7 6 5.6311 -1.8987 -0.8280 8 6 4.7376 -2.3450 -1.8311 9 8 3.6974 -1.7442 -2.0310 10 7 5.0382 -3.4348 -2.5648 11 6 6.2898 -4.1572 -2.3247 12 6 4.1136 -3.8963 -3.6034 13 1 3.2451 -3.2384 -3.6351 14 6 3.6608 -5.3228 -3.2858 15 6 4.8091 -3.8759 -4.9401 16 1 5.8367 -3.5513 -5.0094 17 6 4.1333 -4.2718 -6.0749 18 7 2.8816 -4.6667 -5.9908 19 14 4.9951 -4.2458 -7.7321 20 1 5.6537 -5.5557 -7.9680 21 1 3.9992 -3.9923 -8.8040 22 1 6.0175 -3.1690 -7.7415 23 16 2.4794 -1.4056 -0.0006 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 4.2402 1.7243 0.0115 28 1 6.0021 -0.4415 0.6575 29 1 6.5997 -2.3645 -0.7215 30 1 7.0761 -3.7410 -2.9545 31 1 6.5721 -4.0565 -1.2767 32 1 6.1524 -5.2116 -2.5643 33 1 4.5291 -5.9810 -3.2536 34 1 3.1579 -5.3376 -2.3188 35 1 2.9733 -5.6664 -4.0586 36 1 2.4063 -4.9456 -6.7890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254997784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:33 Heat of formation + Delta-G solvation = 43.558309 kcal Electronic energy + Delta-G solvation = -19715.484938 eV Core-core repulsion = 16713.937814 eV Total energy + Delta-G solvation = -3001.547125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63663 -38.96295 -35.68454 -33.89571 -32.88954 -31.23480 -29.57406 -27.49764 -26.15320 -25.22437 -24.03178 -22.89798 -20.44498 -19.43232 -18.24358 -17.10478 -16.86419 -16.32713 -15.50156 -14.81246 -14.62305 -14.39234 -14.13616 -13.60863 -13.32129 -13.05410 -12.64043 -12.58987 -12.47252 -12.32766 -11.90313 -11.55712 -11.46099 -11.23350 -11.08894 -10.81539 -10.72617 -10.29811 -10.19200 -9.94376 -9.30808 -9.16208 -8.99189 -8.45967 -8.27924 -7.82098 -7.36000 -6.07799 -4.15637 0.45905 1.71941 2.03265 2.29784 3.20098 3.25629 3.32976 3.36053 3.95995 4.11250 4.40568 4.50423 5.12484 5.18978 5.24078 5.29919 5.54354 5.54767 5.59481 5.69255 5.77291 5.97229 6.04029 6.23462 6.31292 6.33764 6.57860 6.74906 6.81728 7.04585 7.43695 7.52664 7.71001 8.00933 8.12505 8.19136 8.52396 8.82662 9.04112 9.50912 10.97323 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.005158 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.293364 B = 5427.502726 C = 5931.339577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.003 4.003 3 N -0.488 5.488 4 C 0.058 3.942 5 C -0.223 4.223 6 C -0.004 4.004 7 C -0.201 4.201 8 C 0.518 3.482 9 O -0.543 6.543 10 N -0.583 5.583 11 C 0.084 3.916 12 C 0.257 3.743 13 H 0.065 0.935 14 C -0.146 4.146 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 S 0.264 5.736 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.169 0.831 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.011 0.989 35 H 0.093 0.907 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 3.645 13.955 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.275 4.275 3 N -0.204 5.204 4 C -0.100 4.100 5 C -0.345 4.345 6 C -0.026 4.026 7 C -0.226 4.226 8 C 0.309 3.691 9 O -0.425 6.425 10 N -0.313 5.313 11 C -0.060 4.060 12 C 0.157 3.843 13 H 0.082 0.918 14 C -0.205 4.205 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.200 1.200 23 S 0.525 5.475 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.186 0.814 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.030 0.970 35 H 0.112 0.888 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.087 3.238 13.696 14.115 hybrid contribution 1.500 0.648 -1.243 2.052 sum 2.587 3.886 12.453 13.299 Atomic orbital electron populations 1.20349 0.86035 1.04022 1.02970 1.27145 1.01796 0.92859 1.05670 1.65875 1.05109 1.31903 1.17515 1.22172 0.90975 0.94573 1.02305 1.23710 0.98715 0.97153 1.14927 1.20453 0.92154 0.93754 0.96276 1.22548 1.01918 1.00216 0.97870 1.17184 0.86698 0.81649 0.83617 1.90878 1.26292 1.56170 1.69207 1.48264 1.20907 1.26498 1.35622 1.21608 0.86958 0.98316 0.99082 1.18935 0.89336 0.92369 0.83672 0.91768 1.22093 1.00474 0.98717 0.99208 1.21315 0.98910 1.44563 0.91500 0.92379 1.24887 0.94853 0.94978 0.99056 1.69871 1.09485 1.44082 1.29223 0.86502 0.79299 0.78291 0.83351 1.20610 1.21096 1.19976 1.83643 0.95176 1.09679 1.58996 0.90346 0.89832 0.90312 0.81414 0.84438 0.84918 0.93241 0.92791 0.90837 0.95168 0.96981 0.88802 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.46 36.01 0.38 -0.52 16 2 C 0.00 -0.04 7.37 -13.32 -0.10 -0.14 16 3 N -0.49 -8.39 10.50 -11.18 -0.12 -8.51 16 4 C 0.06 0.92 11.38 -18.35 -0.21 0.71 16 5 C -0.22 -3.58 4.67 -38.67 -0.18 -3.76 16 6 C 0.00 -0.06 9.93 -39.21 -0.39 -0.45 16 7 C -0.20 -3.07 9.02 -39.28 -0.35 -3.42 16 8 C 0.52 10.54 7.02 -15.00 -0.11 10.43 16 9 O -0.54 -12.65 10.84 5.12 0.06 -12.59 16 10 N -0.58 -12.31 2.75 -178.69 -0.49 -12.80 16 11 C 0.08 1.39 9.32 59.85 0.56 1.95 16 12 C 0.26 6.51 2.64 -69.08 -0.18 6.32 16 13 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 14 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 15 C -0.52 -14.20 8.37 -34.44 -0.29 -14.49 16 16 H 0.06 1.56 7.64 -52.49 -0.40 1.16 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 S 0.26 4.38 19.44 -107.50 -2.09 2.29 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.17 2.17 8.06 -52.48 -0.42 1.75 16 28 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.59 6.21 -52.49 -0.33 1.27 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.69 6.18 -51.93 -0.32 0.37 16 32 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -32.47 311.36 -7.48 -39.95 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.50 Total: 0.14 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.63 Total: -4.82 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.02 Total: -45.80 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.06 Total: -12.59 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.09 Total: 2.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.47 -7.48 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254997784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.506 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds