Wall clock time and date at job start Tue Mar 31 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29356 * 124.67713 * 2 1 4 4 C 1.30959 * 117.49415 * 179.72652 * 3 2 1 5 5 C 1.37067 * 113.84599 * 0.51603 * 4 3 2 6 6 C 1.41728 * 126.18943 * 179.79006 * 5 4 3 7 7 C 1.35558 * 119.99820 * 224.46163 * 6 5 4 8 8 C 1.41554 * 120.00061 * 9.66029 * 7 6 5 9 9 O 1.21775 * 119.99989 * 6.61318 * 8 7 6 10 10 N 1.34773 * 119.99607 * 186.61205 * 8 7 6 11 11 C 1.46497 * 120.00602 * 359.97438 * 10 8 7 12 12 C 1.46509 * 119.99496 * 180.02562 * 10 8 7 13 13 H 1.09003 * 109.47019 * 359.97438 * 12 10 8 14 14 C 1.52999 * 109.47059 * 239.99855 * 12 10 8 15 15 C 1.50700 * 109.46838 * 119.99960 * 12 10 8 16 16 H 1.07994 * 120.00624 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99674 * 179.97438 * 15 12 10 18 18 N 1.31516 * 120.00394 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 120.00094 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46836 * 89.99773 * 19 17 15 21 21 H 1.48494 * 109.47239 * 209.99915 * 19 17 15 22 22 H 1.48500 * 109.46905 * 330.00501 * 19 17 15 23 23 S 1.70918 * 124.67438 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47045 * 269.98273 * 1 2 3 25 25 H 1.09001 * 109.47031 * 29.98167 * 1 2 3 26 26 H 1.08998 * 109.47083 * 149.98071 * 1 2 3 27 27 H 1.08003 * 123.07379 * 180.34609 * 4 3 2 28 28 H 1.07996 * 119.99864 * 44.46359 * 6 5 4 29 29 H 1.08002 * 119.99928 * 189.66319 * 7 6 5 30 30 H 1.09003 * 109.47256 * 270.00153 * 11 10 8 31 31 H 1.09003 * 109.47002 * 30.00349 * 11 10 8 32 32 H 1.08999 * 109.47272 * 150.00403 * 11 10 8 33 33 H 1.09002 * 109.46994 * 300.00393 * 14 12 10 34 34 H 1.09001 * 109.47224 * 59.99651 * 14 12 10 35 35 H 1.08993 * 109.47315 * 180.02562 * 14 12 10 36 36 H 0.96997 * 120.00578 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0638 0.0000 4 6 3.5423 0.9000 0.0055 5 6 3.9353 -0.4130 -0.0006 6 6 5.2711 -0.8867 -0.0010 7 6 5.6311 -1.8987 -0.8280 8 6 4.7376 -2.3450 -1.8311 9 8 3.6974 -1.7442 -2.0310 10 7 5.0382 -3.4348 -2.5648 11 6 6.2898 -4.1572 -2.3247 12 6 4.1136 -3.8963 -3.6034 13 1 3.2451 -3.2384 -3.6351 14 6 3.6608 -5.3228 -3.2858 15 6 4.8091 -3.8759 -4.9401 16 1 5.8367 -3.5513 -5.0094 17 6 4.1333 -4.2718 -6.0749 18 7 2.8816 -4.6667 -5.9908 19 14 4.9951 -4.2458 -7.7321 20 1 5.6537 -5.5557 -7.9680 21 1 3.9992 -3.9923 -8.8040 22 1 6.0175 -3.1690 -7.7415 23 16 2.4794 -1.4056 -0.0006 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 4.2402 1.7243 0.0115 28 1 6.0021 -0.4415 0.6575 29 1 6.5997 -2.3645 -0.7215 30 1 7.0761 -3.7410 -2.9545 31 1 6.5721 -4.0565 -1.2767 32 1 6.1524 -5.2116 -2.5643 33 1 4.5291 -5.9810 -3.2536 34 1 3.1579 -5.3376 -2.3188 35 1 2.9733 -5.6664 -4.0586 36 1 2.4063 -4.9456 -6.7890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254997784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:32 Heat of formation + Delta-G solvation = 22.858133 kcal Electronic energy + Delta-G solvation = -19716.382565 eV Core-core repulsion = 16713.937814 eV Total energy + Delta-G solvation = -3002.444752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.07499 -40.26437 -37.34899 -35.18553 -34.79120 -32.44443 -31.33007 -28.74952 -27.58351 -27.27298 -25.29015 -24.27733 -22.05276 -20.74272 -19.64944 -18.56647 -18.29541 -18.12261 -17.10065 -16.46134 -16.03444 -15.81648 -15.53155 -14.89155 -14.67602 -14.50298 -14.22827 -13.95703 -13.70644 -13.44577 -13.40449 -13.05366 -12.97400 -12.80196 -12.67840 -12.60484 -12.43959 -12.18647 -12.14593 -11.23718 -11.17215 -10.60585 -10.52997 -10.36589 -9.66480 -9.08801 -8.91629 -8.14395 -6.31031 -0.74780 0.53065 0.81714 1.07976 1.39091 1.40928 1.50461 1.96320 2.33935 2.57957 2.65589 3.12791 3.39867 3.98581 4.07728 4.20682 4.41749 4.48009 4.61989 4.64207 4.64621 4.71251 4.81287 4.89638 4.99863 5.04843 5.08709 5.17748 5.23173 5.42716 5.49582 5.69257 5.71599 6.07413 6.17858 6.77413 6.89022 6.90731 7.34048 7.53610 8.88967 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021814 B = 0.005158 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.293364 B = 5427.502726 C = 5931.339577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.005 4.005 3 N -0.512 5.512 4 C 0.049 3.951 5 C -0.235 4.235 6 C 0.020 3.980 7 C -0.218 4.218 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.596 5.596 11 C 0.081 3.919 12 C 0.264 3.736 13 H 0.011 0.989 14 C -0.131 4.131 15 C -0.537 4.537 16 H 0.056 0.944 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.962 3.038 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.273 1.273 23 S 0.224 5.776 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.197 0.803 28 H 0.191 0.809 29 H 0.172 0.828 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.021 0.979 35 H 0.066 0.934 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 4.052 15.035 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.277 4.277 3 N -0.228 5.228 4 C -0.108 4.108 5 C -0.357 4.357 6 C -0.001 4.001 7 C -0.242 4.242 8 C 0.300 3.700 9 O -0.470 6.470 10 N -0.326 5.326 11 C -0.061 4.061 12 C 0.162 3.838 13 H 0.029 0.971 14 C -0.190 4.190 15 C -0.575 4.575 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.787 3.213 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.198 1.198 23 S 0.485 5.515 24 H 0.124 0.876 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.213 0.787 28 H 0.208 0.792 29 H 0.189 0.811 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.263 3.637 14.801 15.587 hybrid contribution 0.750 0.611 -1.524 1.806 sum 4.013 4.249 13.277 14.506 Atomic orbital electron populations 1.20513 0.83795 1.04341 1.04859 1.27735 1.03279 0.92144 1.04582 1.65937 1.05966 1.32337 1.18560 1.22676 0.91096 0.95423 1.01595 1.24060 0.99492 0.97009 1.15167 1.21024 0.91637 0.92038 0.95451 1.22532 1.02560 1.01674 0.97448 1.18051 0.86904 0.80879 0.84177 1.90870 1.28295 1.57296 1.70526 1.48237 1.21824 1.27520 1.34979 1.21838 0.84890 0.97388 1.01993 1.18459 0.88595 0.91938 0.84846 0.97143 1.21865 1.00446 0.98062 0.98616 1.21585 0.98885 1.44386 0.92682 0.92528 1.25709 0.95474 0.94670 1.02593 1.70015 1.10786 1.44753 1.30071 0.85498 0.78118 0.78746 0.78899 1.19148 1.21188 1.19806 1.83757 0.96885 1.11117 1.59707 0.87597 0.89484 0.89907 0.78673 0.79216 0.81110 0.92865 0.88374 0.91356 0.93566 0.96019 0.91550 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.46 71.24 0.74 -1.05 16 2 C -0.01 -0.17 7.37 88.47 0.65 0.48 16 3 N -0.51 -17.29 10.50 -189.29 -1.99 -19.27 16 4 C 0.05 1.49 11.38 84.55 0.96 2.45 16 5 C -0.23 -7.21 4.67 22.86 0.11 -7.10 16 6 C 0.02 0.48 9.93 22.51 0.22 0.71 16 7 C -0.22 -6.03 9.02 22.47 0.20 -5.82 16 8 C 0.51 20.38 7.02 85.06 0.60 20.98 16 9 O -0.58 -27.93 10.84 -4.59 -0.05 -27.98 16 10 N -0.60 -24.96 2.75 -837.45 -2.31 -27.26 16 11 C 0.08 2.50 9.32 127.77 1.19 3.69 16 12 C 0.26 13.73 2.64 44.24 0.12 13.84 16 13 H 0.01 0.66 6.90 -2.39 -0.02 0.64 16 14 C -0.13 -6.32 8.95 71.98 0.64 -5.68 16 15 C -0.54 -29.49 8.37 25.60 0.21 -29.28 16 16 H 0.06 3.05 7.64 -2.91 -0.02 3.02 16 17 C 0.01 0.83 5.30 84.65 0.45 1.28 16 18 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 19 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 S 0.22 7.51 19.44 -56.49 -1.10 6.41 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.20 4.56 8.06 -2.91 -0.02 4.53 16 28 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.17 3.28 6.21 -2.91 -0.02 3.27 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 2.12 6.18 -2.39 -0.01 2.10 16 32 H 0.07 2.15 6.43 -2.39 -0.02 2.14 16 33 H 0.05 2.01 6.66 -2.39 -0.02 2.00 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -73.67 311.36 4.02 -69.65 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.09 Total: 11.36 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.10 Total: -5.50 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -4.05 Total: -99.55 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 7.51 SS G_CDS: -1.10 Total: 6.41 kcal Total: -73.67 4.02 -69.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254997784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.505 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds