Wall clock time and date at job start Tue Mar 31 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29367 * 124.67193 * 2 1 4 4 C 1.30952 * 117.48871 * 179.72539 * 3 2 1 5 5 C 1.37071 * 113.84996 * 0.52269 * 4 3 2 6 6 C 1.41728 * 126.19024 * 179.78551 * 5 4 3 7 7 C 1.35557 * 119.99726 * 224.48647 * 6 5 4 8 8 C 1.41538 * 120.00432 * 9.64881 * 7 6 5 9 9 O 1.21779 * 119.99727 * 6.53832 * 8 7 6 10 10 N 1.34778 * 120.00445 * 186.53610 * 8 7 6 11 11 C 1.46502 * 120.00136 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46652 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46521 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46627 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00285 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99845 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99884 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47366 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47059 * 120.00113 * 18 16 14 21 21 H 1.48504 * 109.46814 * 239.99745 * 18 16 14 22 22 S 1.70906 * 124.67820 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47305 * 269.97901 * 1 2 3 24 24 H 1.09003 * 109.47255 * 29.97868 * 1 2 3 25 25 H 1.09003 * 109.46867 * 149.97746 * 1 2 3 26 26 H 1.08005 * 123.07527 * 180.35222 * 4 3 2 27 27 H 1.07995 * 119.99887 * 44.49134 * 6 5 4 28 28 H 1.08008 * 119.99769 * 189.64668 * 7 6 5 29 29 H 0.96997 * 119.99697 * 0.02562 * 10 8 7 30 30 H 1.09004 * 109.47113 * 300.00199 * 11 10 8 31 31 H 1.08995 * 109.46800 * 60.00320 * 11 10 8 32 32 H 1.08992 * 109.47322 * 299.99483 * 12 11 10 33 33 H 1.09003 * 109.47034 * 60.00495 * 12 11 10 34 34 H 1.08999 * 109.47636 * 300.00209 * 13 12 11 35 35 H 1.09003 * 109.47038 * 60.00527 * 13 12 11 36 36 H 0.97002 * 120.00100 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5421 0.9002 0.0056 5 6 3.9353 -0.4129 -0.0007 6 6 5.2711 -0.8865 -0.0012 7 6 5.6312 -1.8980 -0.8287 8 6 4.7379 -2.3440 -1.8318 9 8 3.6969 -1.7441 -2.0305 10 7 5.0392 -3.4326 -2.5672 11 6 4.1142 -3.8945 -3.6051 12 6 4.6903 -5.1384 -4.2846 13 6 3.7238 -5.6212 -5.3682 14 6 4.2915 -6.8460 -6.0380 15 1 5.2458 -7.2409 -5.7221 16 6 3.5925 -7.4626 -7.0540 17 7 2.4307 -6.9814 -7.4390 18 14 4.2958 -8.9812 -7.8838 19 1 5.6058 -9.3183 -7.2710 20 1 3.3595 -10.1202 -7.7071 21 1 4.4809 -8.7127 -9.3326 22 16 2.4794 -1.4055 -0.0006 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.2401 1.7244 0.0116 27 1 6.0020 -0.4415 0.6577 28 1 6.6000 -2.3637 -0.7225 29 1 5.8682 -3.9106 -2.4086 30 1 3.1535 -4.1401 -3.1524 31 1 3.9761 -3.1066 -4.3454 32 1 5.6509 -4.8932 -4.7372 33 1 4.8279 -5.9262 -3.5439 34 1 2.7632 -5.8665 -4.9153 35 1 3.5857 -4.8335 -6.1090 36 1 1.9387 -7.4153 -8.1536 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255520925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:25 Heat of formation + Delta-G solvation = 18.345470 kcal Electronic energy + Delta-G solvation = -18489.361964 eV Core-core repulsion = 15486.721529 eV Total energy + Delta-G solvation = -3002.640435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.04491 -39.30829 -35.72795 -34.27778 -33.34823 -31.70001 -31.09474 -28.27754 -26.63942 -24.37309 -23.54413 -22.09773 -20.75145 -20.15037 -19.27882 -17.69205 -17.01287 -16.45109 -15.67241 -15.38793 -15.01867 -14.86993 -14.47969 -14.09636 -13.78926 -13.62191 -13.42361 -12.93765 -12.59226 -12.30704 -12.24510 -11.83796 -11.77924 -11.59464 -10.94241 -10.76074 -10.61467 -10.47169 -9.91132 -9.81148 -9.55057 -9.41623 -9.12873 -8.99714 -8.39464 -8.27389 -8.14871 -6.03813 -4.06903 0.08155 1.35051 1.68186 1.93450 2.87054 3.28463 3.35984 3.39278 3.43603 3.56525 4.20454 4.42752 4.76654 4.89786 5.01599 5.25854 5.28820 5.32089 5.32098 5.38656 5.65973 5.74292 5.76083 5.92297 5.99768 6.14724 6.25787 6.47437 6.57945 6.82383 6.98400 7.61598 7.71094 7.73867 7.80867 7.94948 8.34723 8.38809 8.99992 9.57449 11.07498 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029871 B = 0.003056 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.150384 B = 9160.020828 C = 9868.631772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.008 3.992 3 N -0.487 5.487 4 C 0.067 3.933 5 C -0.235 4.235 6 C 0.016 3.984 7 C -0.214 4.214 8 C 0.525 3.475 9 O -0.536 6.536 10 N -0.718 5.718 11 C 0.117 3.883 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 S 0.256 5.744 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.172 0.828 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.398 0.602 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 12.388 18.622 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.264 4.264 3 N -0.203 5.203 4 C -0.091 4.091 5 C -0.357 4.357 6 C -0.007 4.007 7 C -0.238 4.238 8 C 0.314 3.686 9 O -0.417 6.417 10 N -0.368 5.368 11 C -0.006 4.006 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 S 0.517 5.483 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.189 0.811 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.231 0.769 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.027 12.156 18.332 22.090 hybrid contribution 1.594 -0.359 -0.696 1.776 sum 3.620 11.797 17.636 21.525 Atomic orbital electron populations 1.20401 0.85721 1.04218 1.03337 1.27235 1.01966 0.92582 1.04597 1.65920 1.05092 1.31788 1.17485 1.22262 0.91033 0.94599 1.01205 1.23739 0.98692 0.97295 1.15988 1.20518 0.92124 0.92778 0.95233 1.22273 1.01880 1.01194 0.98451 1.17294 0.86633 0.81220 0.83440 1.90946 1.25848 1.56256 1.68666 1.46236 1.24306 1.29070 1.37140 1.21628 0.92544 0.97423 0.89012 1.21889 1.00605 0.94188 0.99220 1.19033 0.93989 0.96116 0.92264 1.21241 1.05329 1.11515 1.17952 0.92606 1.25036 0.94930 0.97558 0.96972 1.69975 1.13571 1.40478 1.29230 0.86527 0.79100 0.82971 0.79339 1.19756 1.20987 1.20988 1.83671 0.95130 1.09903 1.59641 0.90024 0.89571 0.90165 0.81122 0.83985 0.84683 0.76852 0.91756 0.91779 0.92764 0.92753 0.96290 0.96309 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.46 36.00 0.38 -0.35 16 2 C 0.01 0.11 7.37 -13.32 -0.10 0.01 16 3 N -0.49 -6.88 10.50 -11.18 -0.12 -7.00 16 4 C 0.07 0.84 11.38 -18.35 -0.21 0.63 16 5 C -0.23 -2.90 4.67 -38.67 -0.18 -3.08 16 6 C 0.02 0.15 9.93 -39.21 -0.39 -0.24 16 7 C -0.21 -2.20 9.82 -39.28 -0.39 -2.59 16 8 C 0.52 7.46 7.14 -15.00 -0.11 7.35 16 9 O -0.54 -9.29 11.51 5.12 0.06 -9.23 16 10 N -0.72 -10.00 5.55 -63.24 -0.35 -10.35 16 11 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 12 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 S 0.26 3.31 19.44 -107.50 -2.09 1.22 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16 27 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.40 4.41 8.43 -40.82 -0.34 4.06 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -33.78 324.32 -8.56 -42.34 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.96 Total: -0.65 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.71 Total: -11.61 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.27 Total: -43.34 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.06 Total: -9.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.09 Total: 1.22 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.78 -8.56 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255520925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.689 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds