Wall clock time and date at job start Tue Mar 31 2020 01:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29367 * 124.67193 * 2 1 4 4 C 1.30952 * 117.48871 * 179.72539 * 3 2 1 5 5 C 1.37071 * 113.84996 * 0.52269 * 4 3 2 6 6 C 1.41728 * 126.19024 * 179.78551 * 5 4 3 7 7 C 1.35557 * 119.99726 * 224.48647 * 6 5 4 8 8 C 1.41538 * 120.00432 * 9.64881 * 7 6 5 9 9 O 1.21779 * 119.99727 * 6.53832 * 8 7 6 10 10 N 1.34778 * 120.00445 * 186.53610 * 8 7 6 11 11 C 1.46502 * 120.00136 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46652 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46521 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46627 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00285 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99845 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99884 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47366 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47059 * 120.00113 * 18 16 14 21 21 H 1.48504 * 109.46814 * 239.99745 * 18 16 14 22 22 S 1.70906 * 124.67820 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47305 * 269.97901 * 1 2 3 24 24 H 1.09003 * 109.47255 * 29.97868 * 1 2 3 25 25 H 1.09003 * 109.46867 * 149.97746 * 1 2 3 26 26 H 1.08005 * 123.07527 * 180.35222 * 4 3 2 27 27 H 1.07995 * 119.99887 * 44.49134 * 6 5 4 28 28 H 1.08008 * 119.99769 * 189.64668 * 7 6 5 29 29 H 0.96997 * 119.99697 * 0.02562 * 10 8 7 30 30 H 1.09004 * 109.47113 * 300.00199 * 11 10 8 31 31 H 1.08995 * 109.46800 * 60.00320 * 11 10 8 32 32 H 1.08992 * 109.47322 * 299.99483 * 12 11 10 33 33 H 1.09003 * 109.47034 * 60.00495 * 12 11 10 34 34 H 1.08999 * 109.47636 * 300.00209 * 13 12 11 35 35 H 1.09003 * 109.47038 * 60.00527 * 13 12 11 36 36 H 0.97002 * 120.00100 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5421 0.9002 0.0056 5 6 3.9353 -0.4129 -0.0007 6 6 5.2711 -0.8865 -0.0012 7 6 5.6312 -1.8980 -0.8287 8 6 4.7379 -2.3440 -1.8318 9 8 3.6969 -1.7441 -2.0305 10 7 5.0392 -3.4326 -2.5672 11 6 4.1142 -3.8945 -3.6051 12 6 4.6903 -5.1384 -4.2846 13 6 3.7238 -5.6212 -5.3682 14 6 4.2915 -6.8460 -6.0380 15 1 5.2458 -7.2409 -5.7221 16 6 3.5925 -7.4626 -7.0540 17 7 2.4307 -6.9814 -7.4390 18 14 4.2958 -8.9812 -7.8838 19 1 5.6058 -9.3183 -7.2710 20 1 3.3595 -10.1202 -7.7071 21 1 4.4809 -8.7127 -9.3326 22 16 2.4794 -1.4055 -0.0006 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 4.2401 1.7244 0.0116 27 1 6.0020 -0.4415 0.6577 28 1 6.6000 -2.3637 -0.7225 29 1 5.8682 -3.9106 -2.4086 30 1 3.1535 -4.1401 -3.1524 31 1 3.9761 -3.1066 -4.3454 32 1 5.6509 -4.8932 -4.7372 33 1 4.8279 -5.9262 -3.5439 34 1 2.7632 -5.8665 -4.9153 35 1 3.5857 -4.8335 -6.1090 36 1 1.9387 -7.4153 -8.1536 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255520925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:24 Heat of formation + Delta-G solvation = -4.405000 kcal Electronic energy + Delta-G solvation = -18490.348499 eV Core-core repulsion = 15486.721529 eV Total energy + Delta-G solvation = -3003.626970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10675 -40.29971 -37.13825 -35.38974 -35.05210 -33.15702 -32.25826 -29.46097 -28.17951 -25.62688 -24.80642 -23.37728 -22.31574 -21.21512 -20.32812 -18.72857 -18.47293 -17.97275 -16.88659 -16.69451 -16.42930 -16.11270 -15.82464 -15.33543 -14.87427 -14.62401 -14.37951 -14.20655 -13.77425 -13.72418 -13.53630 -13.37989 -13.02701 -12.78410 -12.55895 -12.52282 -12.34262 -11.69494 -11.64880 -11.36587 -11.17492 -10.72442 -10.57118 -10.53707 -10.13656 -9.23677 -9.15920 -8.20448 -6.31997 -0.80915 0.45283 0.76348 1.00627 1.41379 1.41434 1.54761 1.91143 2.36104 2.43639 2.48617 3.13404 3.36394 3.96119 4.10081 4.18054 4.21629 4.22352 4.39998 4.54858 4.59725 4.62232 4.63029 4.94285 4.98072 5.00416 5.13187 5.15451 5.24281 5.41037 5.46822 5.54833 5.69720 5.83331 6.21464 6.65662 6.85830 6.85909 7.31229 7.37833 8.91861 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029871 B = 0.003056 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.150384 B = 9160.020828 C = 9868.631772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.001 4.001 3 N -0.513 5.513 4 C 0.052 3.948 5 C -0.239 4.239 6 C 0.025 3.975 7 C -0.219 4.219 8 C 0.517 3.483 9 O -0.573 6.573 10 N -0.710 5.710 11 C 0.133 3.867 12 C -0.102 4.102 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.280 1.280 22 S 0.225 5.775 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.197 0.803 27 H 0.189 0.811 28 H 0.176 0.824 29 H 0.415 0.585 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.068 0.932 34 H -0.008 1.008 35 H -0.010 1.010 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 11.998 19.810 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.273 4.273 3 N -0.229 5.229 4 C -0.105 4.105 5 C -0.361 4.361 6 C 0.004 3.996 7 C -0.243 4.243 8 C 0.309 3.691 9 O -0.457 6.457 10 N -0.361 5.361 11 C 0.009 3.991 12 C -0.140 4.140 13 C -0.014 4.014 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.181 1.181 20 H -0.205 1.205 21 H -0.206 1.206 22 S 0.485 5.515 23 H 0.121 0.879 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.213 0.787 27 H 0.206 0.794 28 H 0.193 0.807 29 H 0.251 0.749 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.010 0.990 35 H 0.008 0.992 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.473 11.767 19.546 23.249 hybrid contribution 0.791 -0.170 -1.050 1.326 sum 5.264 11.597 18.496 22.457 Atomic orbital electron populations 1.20534 0.83893 1.04501 1.04834 1.27734 1.03271 0.92156 1.04173 1.65960 1.06071 1.32398 1.18461 1.22724 0.91039 0.95585 1.01136 1.24095 0.99563 0.96986 1.15474 1.21026 0.91456 0.91908 0.95237 1.22393 1.02706 1.01673 0.97517 1.18015 0.86700 0.80556 0.83822 1.90951 1.27661 1.57302 1.69796 1.46007 1.24374 1.29466 1.36285 1.21144 0.92669 0.95965 0.89353 1.21592 0.99348 0.95218 0.97796 1.18946 0.94321 0.94954 0.93202 1.21713 1.05753 1.12185 1.18168 0.91540 1.26035 0.95219 1.01086 0.97824 1.70120 1.15154 1.42280 1.30003 0.85360 0.78839 0.78549 0.78052 1.18149 1.20535 1.20621 1.83723 0.96597 1.10932 1.60204 0.87863 0.89468 0.89604 0.78663 0.79434 0.80657 0.74858 0.93277 0.93750 0.91534 0.91334 0.98961 0.99192 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.46 71.23 0.74 -0.72 16 2 C 0.00 -0.03 7.37 88.47 0.65 0.62 16 3 N -0.51 -14.37 10.50 -189.29 -1.99 -16.36 16 4 C 0.05 1.25 11.38 84.55 0.96 2.21 16 5 C -0.24 -5.57 4.67 22.86 0.11 -5.46 16 6 C 0.03 0.41 9.93 22.51 0.22 0.63 16 7 C -0.22 -3.81 9.82 22.46 0.22 -3.59 16 8 C 0.52 14.01 7.14 85.05 0.61 14.62 16 9 O -0.57 -19.92 11.51 -4.60 -0.05 -19.97 16 10 N -0.71 -18.77 5.55 -472.18 -2.62 -21.39 16 11 C 0.13 4.65 5.67 86.38 0.49 5.14 16 12 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 13 C 0.02 1.22 4.97 29.85 0.15 1.37 16 14 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 15 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 17 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 18 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 S 0.22 5.85 19.44 -56.49 -1.10 4.75 16 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.20 3.41 8.06 -2.91 -0.02 3.38 16 27 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 28 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.41 8.07 8.43 -92.71 -0.78 7.29 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -75.12 324.32 1.87 -73.25 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.30 Total: 9.42 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.01 Total: -18.54 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -4.32 Total: -94.60 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -1.10 Total: 4.75 kcal Total: -75.12 1.87 -73.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255520925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.846 kcal (2) G-P(sol) polarization free energy of solvation -75.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds