Wall clock time and date at job start Tue Mar 31 2020 01:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30936 * 122.90487 * 2 1 4 4 C 1.29433 * 117.36322 * 180.02562 * 3 2 1 5 5 S 1.70951 * 110.39008 * 359.72569 * 4 3 2 6 6 C 1.35666 * 122.90200 * 180.02562 * 2 1 3 7 7 C 1.46681 * 126.13091 * 359.97438 * 6 2 1 8 8 O 1.21690 * 120.00085 * 319.39394 * 7 6 2 9 9 N 1.34775 * 119.99827 * 139.39645 * 7 6 2 10 10 C 1.46918 * 120.63226 * 354.36769 * 9 7 6 11 11 C 1.53195 * 108.77803 * 233.61154 * 10 9 7 12 12 C 1.53039 * 109.31162 * 305.36227 * 11 10 9 13 13 C 1.53047 * 109.53534 * 61.36653 * 12 11 10 14 14 H 1.09003 * 109.49631 * 58.61783 * 13 12 11 15 15 C 1.50701 * 109.49735 * 178.68263 * 13 12 11 16 16 H 1.07998 * 119.99492 * 359.93444 * 15 13 12 17 17 C 1.37871 * 119.99907 * 180.20750 * 15 13 12 18 18 N 1.31508 * 120.00127 * 359.72746 * 17 15 13 19 19 Si 1.86802 * 119.99787 * 179.72255 * 17 15 13 20 20 H 1.48504 * 109.47078 * 90.00553 * 19 17 15 21 21 H 1.48500 * 109.47121 * 209.99985 * 19 17 15 22 22 H 1.48494 * 109.47388 * 330.00412 * 19 17 15 23 23 C 1.46939 * 120.60237 * 174.39389 * 9 7 6 24 24 H 1.09001 * 109.46648 * 269.99707 * 1 2 3 25 25 H 1.09001 * 109.46776 * 29.99224 * 1 2 3 26 26 H 1.08997 * 109.46990 * 150.00024 * 1 2 3 27 27 H 1.07998 * 124.80379 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.59030 * 113.82184 * 10 9 7 29 29 H 1.08998 * 109.70775 * 353.46762 * 10 9 7 30 30 H 1.09003 * 109.49606 * 185.41489 * 11 10 9 31 31 H 1.08997 * 109.49648 * 65.31474 * 11 10 9 32 32 H 1.08995 * 109.46251 * 301.34493 * 12 11 10 33 33 H 1.08999 * 109.46172 * 181.38262 * 12 11 10 34 34 H 0.96999 * 119.99957 * 179.97438 * 18 17 15 35 35 H 1.08996 * 109.61418 * 6.61684 * 23 9 7 36 36 H 1.09003 * 109.55770 * 246.18711 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 -0.0005 5 16 3.9447 -0.6781 0.0066 6 6 2.2440 -1.1391 -0.0005 7 6 1.7191 -2.5087 -0.0006 8 8 0.7546 -2.7908 0.6856 9 7 2.3052 -3.4549 -0.7606 10 6 3.3910 -3.1049 -1.6865 11 6 3.0311 -3.6172 -3.0847 12 6 2.7257 -5.1150 -3.0118 13 6 1.5276 -5.3487 -2.0886 14 1 0.6647 -4.8001 -2.4664 15 6 1.2073 -6.8206 -2.0429 16 1 1.7983 -7.5197 -2.6158 17 6 0.1564 -7.2738 -1.2741 18 7 -0.5632 -6.4223 -0.5765 19 14 -0.2454 -9.0974 -1.2236 20 1 0.5137 -9.7412 -0.1214 21 1 -1.7013 -9.2773 -0.9927 22 1 0.1319 -9.7235 -2.5161 23 6 1.8696 -4.8559 -0.6790 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2058 1.7974 -0.0002 28 1 4.3189 -3.5706 -1.3543 29 1 3.5153 -2.0224 -1.7148 30 1 3.8697 -3.4494 -3.7606 31 1 2.1543 -3.0846 -3.4527 32 1 3.5944 -5.6442 -2.6203 33 1 2.4932 -5.4872 -4.0096 34 1 -1.3027 -6.7412 -0.0359 35 1 0.9877 -4.9283 -0.0426 36 1 2.6732 -5.4643 -0.2642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259673980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:05 Heat of formation + Delta-G solvation = -15.395950 kcal Electronic energy + Delta-G solvation = -20117.197450 eV Core-core repulsion = 17113.093877 eV Total energy + Delta-G solvation = -3004.103573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.50362 -40.38699 -38.32972 -35.36122 -33.58249 -32.95096 -31.64364 -29.57082 -27.04876 -26.39903 -25.71924 -23.57472 -22.54814 -20.86702 -19.52629 -19.38292 -18.39052 -17.68170 -17.23102 -16.60783 -16.35301 -15.73237 -15.39259 -15.26012 -14.90032 -14.59493 -14.49006 -14.28863 -13.91386 -13.66609 -13.49569 -13.40382 -12.89265 -12.75705 -12.43578 -12.33619 -12.26700 -11.95150 -11.67820 -11.29579 -11.00345 -10.93273 -10.71605 -10.54526 -10.36317 -9.81051 -9.48975 -8.11142 -6.28606 -0.69014 0.12578 0.57725 1.41250 1.41822 1.45654 1.52721 1.88524 2.19120 2.42417 3.15971 3.17906 3.55604 3.93589 4.02229 4.10286 4.17295 4.29683 4.52285 4.59587 4.65318 4.68701 4.73948 4.78696 4.83209 5.05340 5.18149 5.20559 5.23331 5.32230 5.49696 5.59512 5.86993 5.97010 6.30869 6.47215 6.59347 6.84096 7.12809 7.41992 8.92409 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.005200 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.660229 B = 5383.257842 C = 5979.694094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.125 3.875 3 N -0.496 5.496 4 C 0.040 3.960 5 S 0.232 5.768 6 C -0.321 4.321 7 C 0.578 3.422 8 O -0.571 6.571 9 N -0.602 5.602 10 C 0.095 3.905 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.038 3.962 14 H -0.015 1.015 15 C -0.535 4.535 16 H 0.064 0.936 17 C 0.010 3.990 18 N -0.916 5.916 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.262 1.262 23 C 0.127 3.873 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.253 0.747 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.428 14.050 -1.730 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.013 4.013 3 N -0.210 5.210 4 C -0.255 4.255 5 S 0.488 5.512 6 C -0.445 4.445 7 C 0.364 3.636 8 O -0.452 6.452 9 N -0.333 5.333 10 C -0.028 4.028 11 C -0.163 4.163 12 C -0.142 4.142 13 C 0.019 3.981 14 H 0.003 0.997 15 C -0.573 4.573 16 H 0.082 0.918 17 C -0.189 4.189 18 N -0.554 5.554 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.187 1.187 23 C 0.005 3.995 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.269 0.731 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.595 13.928 -1.256 19.504 hybrid contribution -1.836 -1.170 0.320 2.201 sum 11.759 12.758 -0.936 17.376 Atomic orbital electron populations 1.20378 0.86856 1.03017 1.03519 1.20696 0.98813 0.85566 0.96208 1.66158 1.06304 1.30317 1.18223 1.29589 0.94961 1.02096 0.98840 1.83694 1.01219 1.01903 1.64399 1.25406 0.99799 0.97711 1.21590 1.17319 0.82573 0.83655 0.80011 1.90813 1.28171 1.81655 1.44576 1.48416 1.36490 1.08773 1.39597 1.22241 0.89508 1.01488 0.89526 1.21902 1.02197 0.96019 0.96147 1.21524 0.98031 0.95457 0.99237 1.18913 0.93165 0.94742 0.91320 0.99729 1.21501 1.14567 0.93262 1.27998 0.91763 1.25897 0.95930 1.02038 0.95067 1.70088 1.19837 1.35737 1.29764 0.85554 0.77018 0.80248 0.78845 1.19962 1.21482 1.18654 1.21806 0.99047 0.77126 1.01493 0.90030 0.88604 0.92718 0.73130 0.89114 0.88678 0.87283 0.93546 0.91894 0.92704 0.93123 0.90291 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.45 9.62 71.24 0.69 -1.77 16 2 C 0.12 3.87 6.79 42.10 0.29 4.15 16 3 N -0.50 -12.58 10.50 -190.40 -2.00 -14.58 16 4 C 0.04 0.67 12.22 130.60 1.60 2.26 16 5 S 0.23 4.59 20.27 -56.49 -1.15 3.45 16 6 C -0.32 -10.46 5.40 23.88 0.13 -10.33 16 7 C 0.58 24.72 7.08 86.45 0.61 25.33 16 8 O -0.57 -30.00 15.38 -4.32 -0.07 -30.06 16 9 N -0.60 -24.70 2.97 -823.60 -2.45 -27.15 16 10 C 0.09 2.79 5.67 86.37 0.49 3.28 16 11 C -0.12 -3.73 6.08 30.67 0.19 -3.54 16 12 C -0.10 -3.99 5.11 30.62 0.16 -3.83 16 13 C 0.04 1.91 2.25 -11.46 -0.03 1.88 16 14 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 15 C -0.53 -29.27 8.56 25.60 0.22 -29.05 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 17 C 0.01 0.57 5.31 84.65 0.45 1.02 16 18 N -0.92 -55.84 11.40 21.44 0.24 -55.59 16 19 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.13 6.34 5.41 86.36 0.47 6.81 16 24 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.05 2.00 7.23 -2.39 -0.02 1.98 16 27 H 0.25 1.50 8.06 -2.91 -0.02 1.47 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.10 2.34 4.55 -10.85 -0.05 2.29 16 30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.08 4.73 5.12 -2.39 -0.01 4.72 16 36 H 0.04 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -74.67 305.18 2.91 -71.75 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.05 Total: 9.81 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 5.25 Total: -3.78 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.20 Total: -97.32 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.07 Total: -30.06 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.15 Total: 3.45 kcal Total: -74.67 2.91 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259673980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.357 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds