Wall clock time and date at job start Tue Mar 31 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30942 * 122.90426 * 2 1 4 4 C 1.29431 * 117.36022 * 179.97438 * 3 2 1 5 5 S 1.70948 * 110.39489 * 0.25052 * 4 3 2 6 6 C 1.35661 * 122.90468 * 180.02562 * 2 1 3 7 7 C 1.46681 * 126.12699 * 0.03509 * 6 2 1 8 8 O 1.21685 * 120.00480 * 40.66984 * 7 6 2 9 9 N 1.34781 * 120.00050 * 220.67017 * 7 6 2 10 10 C 1.46927 * 120.62771 * 5.63052 * 9 7 6 11 11 C 1.53199 * 108.77460 * 126.37006 * 10 9 7 12 12 C 1.53036 * 109.31203 * 54.63691 * 11 10 9 13 13 C 1.53045 * 109.53805 * 298.63382 * 12 11 10 14 14 H 1.09000 * 109.49548 * 301.38351 * 13 12 11 15 15 C 1.50704 * 109.49882 * 181.31801 * 13 12 11 16 16 H 1.07998 * 119.99817 * 359.97438 * 15 13 12 17 17 C 1.37875 * 119.99740 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00482 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 119.99774 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47211 * 89.99488 * 19 17 15 21 21 H 1.48500 * 109.47382 * 209.99505 * 19 17 15 22 22 H 1.48500 * 109.47370 * 329.99564 * 19 17 15 23 23 C 1.46920 * 120.63530 * 185.35515 * 9 7 6 24 24 H 1.09002 * 109.47533 * 89.96810 * 1 2 3 25 25 H 1.09005 * 109.47323 * 209.96958 * 1 2 3 26 26 H 1.09006 * 109.47282 * 329.97155 * 1 2 3 27 27 H 1.07999 * 124.79949 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.58819 * 246.15628 * 10 9 7 29 29 H 1.09001 * 109.58906 * 6.43972 * 10 9 7 30 30 H 1.08995 * 109.49282 * 174.58746 * 11 10 9 31 31 H 1.09001 * 109.49359 * 294.68349 * 11 10 9 32 32 H 1.09002 * 109.46107 * 58.65273 * 12 11 10 33 33 H 1.08997 * 109.46315 * 178.63309 * 12 11 10 34 34 H 0.96997 * 120.00603 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.58607 * 353.41567 * 23 9 7 36 36 H 1.09000 * 109.58882 * 113.83863 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9743 0.0005 5 16 3.9447 -0.6780 -0.0059 6 6 2.2439 -1.1390 -0.0005 7 6 1.7190 -2.5087 -0.0018 8 8 0.7553 -2.7903 -0.6893 9 7 2.3042 -3.4554 0.7584 10 6 3.3889 -3.1059 1.6858 11 6 3.0271 -3.6185 3.0834 12 6 2.7213 -5.1162 3.0096 13 6 1.5244 -5.3493 2.0848 14 1 0.6612 -4.8007 2.4616 15 6 1.2039 -6.8212 2.0382 16 1 1.7948 -7.5208 2.6106 17 6 0.1569 -7.2744 1.2641 18 7 -0.5624 -6.4225 0.5668 19 14 -0.2409 -9.0987 1.2070 20 1 -1.2164 -9.4264 2.2776 21 1 -0.8255 -9.4367 -0.1156 22 1 1.0028 -9.8833 1.4135 23 6 1.8655 -4.8553 0.6800 24 1 -0.3634 0.0006 -1.0277 25 1 -0.3634 -0.8903 0.5134 26 1 -0.3634 0.8898 0.5143 27 1 4.2057 1.7975 0.0002 28 1 4.3170 -3.5717 1.3547 29 1 3.5126 -2.0232 1.7121 30 1 3.8647 -3.4511 3.7603 31 1 2.1498 -3.0857 3.4504 32 1 3.5905 -5.6455 2.6191 33 1 2.4872 -5.4886 4.0069 34 1 -1.2992 -6.7413 0.0224 35 1 0.9825 -4.9266 0.0448 36 1 2.6668 -5.4667 0.2651 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259673982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:07 Heat of formation + Delta-G solvation = 5.411704 kcal Electronic energy + Delta-G solvation = -20118.155886 eV Core-core repulsion = 17114.954600 eV Total energy + Delta-G solvation = -3003.201286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20787 -39.01036 -36.70100 -33.47919 -31.93231 -31.73363 -29.93850 -28.23736 -25.18197 -25.10648 -24.40587 -21.94576 -21.11209 -19.27667 -18.42938 -17.95955 -16.61262 -16.11149 -15.81980 -15.09456 -14.64573 -14.35562 -14.00000 -13.82638 -13.57808 -13.27106 -12.77739 -12.66692 -12.43359 -12.37641 -12.08228 -11.92593 -11.33627 -11.08279 -10.99012 -10.53734 -10.51884 -10.27737 -9.95650 -9.89886 -9.50399 -9.28794 -9.12401 -8.97809 -8.75849 -8.46330 -7.83840 -6.02256 -4.11454 0.38477 1.18253 1.58425 2.60242 3.28387 3.35908 3.37625 3.39202 3.68819 4.14092 4.40904 4.88720 5.02493 5.18787 5.24754 5.28376 5.43995 5.61657 5.79444 5.81683 5.90690 5.93647 6.11926 6.26030 6.36766 6.55648 6.61218 6.80014 6.92969 7.06560 7.18572 7.56939 7.62124 7.82566 7.94663 8.13489 8.34355 8.68883 8.92793 9.54547 11.03038 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027861 B = 0.005201 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.755747 B = 5381.871841 C = 5977.392355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.121 3.879 3 N -0.471 5.471 4 C 0.011 3.989 5 S 0.167 5.833 6 C -0.270 4.270 7 C 0.582 3.418 8 O -0.514 6.514 9 N -0.596 5.596 10 C 0.099 3.901 11 C -0.131 4.131 12 C -0.111 4.111 13 C 0.039 3.961 14 H 0.030 0.970 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.113 3.887 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.201 0.799 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.125 0.875 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 12.552 0.780 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.015 4.015 3 N -0.185 5.185 4 C -0.284 4.284 5 S 0.421 5.579 6 C -0.394 4.394 7 C 0.366 3.634 8 O -0.391 6.391 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.169 4.169 12 C -0.149 4.149 13 C 0.020 3.980 14 H 0.048 0.952 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.006 4.006 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.218 0.782 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.116 12.423 0.259 16.023 hybrid contribution -0.862 -0.811 -0.014 1.184 sum 9.254 11.612 0.246 14.850 Atomic orbital electron populations 1.20436 0.86128 1.03494 1.03762 1.20616 0.98605 0.85010 0.97242 1.66078 1.04957 1.31413 1.16089 1.28653 0.95386 1.00961 1.03444 1.84026 1.06061 1.02224 1.65547 1.25812 0.95929 1.00037 1.17592 1.16788 0.83389 0.82083 0.81167 1.90862 1.25687 1.80203 1.42355 1.48428 1.35472 1.10267 1.38718 1.21910 0.90274 0.99616 0.90703 1.21922 1.00933 0.99068 0.95019 1.21636 1.00118 0.92465 1.00633 1.18900 0.92551 0.96447 0.90068 0.95231 1.21060 1.14844 0.91763 1.28326 0.92295 1.25053 0.95896 0.97739 0.95312 1.69872 1.19422 1.33750 1.28706 0.86586 0.78572 0.85410 0.77398 1.20657 1.21172 1.19900 1.22298 1.00947 0.74596 1.02787 0.89837 0.89791 0.90770 0.78198 0.91607 0.91127 0.91997 0.92096 0.93073 0.92834 0.92582 0.85689 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 9.62 36.00 0.35 -0.84 16 2 C 0.12 1.92 6.79 -83.89 -0.57 1.35 16 3 N -0.47 -6.66 10.50 -11.54 -0.12 -6.78 16 4 C 0.01 0.12 12.22 51.75 0.63 0.75 16 5 S 0.17 1.97 20.27 -107.50 -2.18 -0.21 16 6 C -0.27 -4.47 5.40 -37.10 -0.20 -4.67 16 7 C 0.58 11.94 7.08 -12.85 -0.09 11.85 16 8 O -0.51 -12.48 15.39 5.20 0.08 -12.40 16 9 N -0.60 -12.00 2.98 -174.57 -0.52 -12.52 16 10 C 0.10 1.57 5.68 -3.71 -0.02 1.55 16 11 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 12 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 13 C 0.04 0.96 2.24 -91.87 -0.21 0.75 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 15 C -0.52 -13.89 8.56 -34.44 -0.29 -14.19 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.88 -25.33 11.39 55.43 0.63 -24.70 16 19 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.11 2.70 5.39 -3.93 -0.02 2.68 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.41 7.24 -51.93 -0.38 1.03 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.98 4.54 -38.49 -0.17 0.81 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.13 3.48 5.10 -51.93 -0.27 3.21 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -31.17 305.12 -7.93 -39.10 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.58 Total: 0.63 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.82 Total: -3.70 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.01 Total: -44.00 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.18 Total: -0.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.17 -7.93 -39.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259673982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.514 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds