Wall clock time and date at job start Tue Mar 31 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30941 * 122.90048 * 2 1 4 4 C 1.29435 * 117.36066 * 180.02562 * 3 2 1 5 5 S 1.70947 * 110.39243 * 359.72989 * 4 3 2 6 6 C 1.35661 * 122.90410 * 180.02562 * 2 1 3 7 7 C 1.46673 * 126.13367 * 359.96627 * 6 2 1 8 8 O 1.21692 * 120.00130 * 6.89102 * 7 6 2 9 9 N 1.34772 * 120.00466 * 186.88793 * 7 6 2 10 10 C 1.46500 * 120.00508 * 185.64983 * 9 7 6 11 11 C 1.50698 * 109.47411 * 270.00715 * 10 9 7 12 12 H 1.08000 * 120.00214 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99896 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00122 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00261 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47188 * 89.99910 * 15 13 11 17 17 H 1.48496 * 109.47182 * 210.00389 * 15 13 11 18 18 H 1.48501 * 109.46931 * 330.00551 * 15 13 11 19 19 C 1.46500 * 119.99875 * 5.65647 * 9 7 6 20 20 C 1.53003 * 109.47300 * 274.37070 * 19 9 7 21 21 C 1.52998 * 117.49800 * 243.75019 * 20 19 9 22 22 C 1.52997 * 117.50180 * 175.08508 * 20 19 9 23 23 H 1.08997 * 109.46846 * 269.96006 * 1 2 3 24 24 H 1.08998 * 109.47022 * 29.95879 * 1 2 3 25 25 H 1.08997 * 109.46867 * 149.96009 * 1 2 3 26 26 H 1.08000 * 124.80251 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47417 * 150.00180 * 10 9 7 28 28 H 1.09001 * 109.47108 * 30.00655 * 10 9 7 29 29 H 0.96998 * 120.00454 * 179.97438 * 14 13 11 30 30 H 1.09005 * 109.46861 * 34.36860 * 19 9 7 31 31 H 1.09001 * 109.47558 * 154.36591 * 19 9 7 32 32 H 1.09007 * 115.54485 * 29.41180 * 20 19 9 33 33 H 1.09007 * 117.49808 * 359.97438 * 21 20 19 34 34 H 1.08999 * 117.50200 * 145.02066 * 21 20 19 35 35 H 1.08997 * 117.49815 * 214.97888 * 22 20 19 36 36 H 1.08998 * 117.49382 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9744 -0.0005 5 16 3.9448 -0.6779 0.0065 6 6 2.2440 -1.1390 -0.0005 7 6 1.7193 -2.5086 -0.0004 8 8 0.5245 -2.7025 -0.1263 9 7 2.5603 -3.5525 0.1390 10 6 2.0549 -4.9220 0.0154 11 6 1.6155 -5.4194 1.3684 12 1 1.7043 -4.7796 2.2340 13 6 1.1012 -6.6917 1.5016 14 7 0.7183 -7.1260 2.6824 15 14 0.9483 -7.7987 0.0047 16 1 2.1958 -8.5881 -0.1567 17 1 -0.2012 -8.7211 0.1866 18 1 0.7289 -6.9669 -1.2057 19 6 3.9799 -3.3178 0.4143 20 6 4.7257 -3.0993 -0.9037 21 6 5.7963 -4.1226 -1.2876 22 6 6.2064 -2.7227 -0.8236 23 1 -0.3633 -0.0007 1.0276 24 1 -0.3633 0.8903 -0.5132 25 1 -0.3633 -0.8896 -0.5144 26 1 4.2058 1.7976 -0.0002 27 1 2.8442 -5.5673 -0.3702 28 1 1.2071 -4.9360 -0.6696 29 1 0.3561 -8.0209 2.7761 30 1 4.0867 -2.4338 1.0430 31 1 4.3981 -4.1826 0.9293 32 1 4.1374 -2.6600 -1.7095 33 1 5.9697 -4.9513 -0.6009 34 1 5.9129 -4.3562 -2.3458 35 1 6.5925 -2.0359 -1.5768 36 1 6.6491 -2.6301 0.1681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264012121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:48 Heat of formation + Delta-G solvation = 47.165253 kcal Electronic energy + Delta-G solvation = -20037.801976 eV Core-core repulsion = 17036.411261 eV Total energy + Delta-G solvation = -3001.390716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02601 -39.01878 -37.28102 -34.66820 -32.60206 -31.62174 -29.26268 -27.70977 -26.29224 -24.76255 -22.98505 -22.33003 -21.11663 -20.10519 -18.44157 -18.02409 -16.95772 -16.45492 -15.82915 -15.28924 -15.03644 -14.63232 -14.41493 -13.94657 -13.56111 -13.34200 -13.02599 -12.78024 -12.41759 -12.28771 -11.94314 -11.80726 -11.62852 -11.51089 -11.21854 -10.95181 -10.63705 -10.44045 -10.22661 -10.05152 -9.59394 -9.50119 -9.18649 -9.10587 -8.63130 -8.59383 -7.85671 -6.11773 -4.11202 0.47085 1.42629 1.79367 2.70508 3.24020 3.32187 3.36388 3.53855 3.63413 3.85839 4.30068 4.36404 4.66429 4.88730 4.91383 5.11765 5.17193 5.21750 5.31628 5.41391 5.55123 5.60751 5.80006 5.90454 5.91586 6.00001 6.07321 6.11572 6.23701 6.57846 6.59804 6.88441 7.19186 7.55144 7.76520 8.06132 8.41207 8.76463 8.92110 9.47521 11.01520 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.006766 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.689306 B = 4137.372645 C = 5268.549284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.131 3.869 3 N -0.481 5.481 4 C -0.022 4.022 5 S 0.210 5.790 6 C -0.288 4.288 7 C 0.585 3.415 8 O -0.516 6.516 9 N -0.582 5.582 10 C 0.221 3.779 11 C -0.530 4.530 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.264 1.264 19 C 0.129 3.871 20 C -0.180 4.180 21 C -0.170 4.170 22 C -0.173 4.173 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.193 0.807 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.265 0.735 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.617 12.100 -7.487 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.007 4.007 3 N -0.195 5.195 4 C -0.316 4.316 5 S 0.467 5.533 6 C -0.412 4.412 7 C 0.371 3.629 8 O -0.394 6.394 9 N -0.312 5.312 10 C 0.101 3.899 11 C -0.569 4.569 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.188 1.188 19 C 0.004 3.996 20 C -0.201 4.201 21 C -0.207 4.207 22 C -0.211 4.211 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.122 0.878 26 H 0.210 0.790 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.671 11.880 -7.440 18.240 hybrid contribution -0.782 -0.492 -0.565 1.083 sum 10.890 11.387 -8.005 17.673 Atomic orbital electron populations 1.20665 0.86269 1.04350 1.03634 1.20679 0.98645 0.85255 0.96090 1.66198 1.05273 1.31787 1.16266 1.29074 0.95715 1.04259 1.02563 1.84817 1.05229 0.98351 1.64889 1.25867 0.96134 0.99831 1.19337 1.16695 0.86147 0.82074 0.77971 1.90758 1.14230 1.84229 1.50176 1.47745 1.06857 1.07705 1.68866 1.19719 0.95012 0.76515 0.98669 1.21301 1.42389 0.99820 0.93360 0.90677 1.24837 0.94570 0.97663 0.95780 1.69890 1.42427 1.18362 1.22697 0.86888 0.78198 0.81010 0.83917 1.20054 1.20874 1.18814 1.21354 0.81821 1.02266 0.94209 1.22897 0.91645 1.05043 1.00474 1.23066 1.02658 0.92905 1.02058 1.22961 0.96297 0.98775 1.03040 0.90391 0.91265 0.87824 0.78997 0.95216 0.93979 0.92503 0.90577 0.88053 0.87461 0.88231 0.88921 0.88667 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 9.78 36.01 0.35 -1.08 16 2 C 0.13 2.19 6.79 -83.89 -0.57 1.62 16 3 N -0.48 -7.31 10.50 -11.53 -0.12 -7.43 16 4 C -0.02 -0.26 12.22 51.75 0.63 0.37 16 5 S 0.21 2.54 15.39 -107.50 -1.65 0.88 16 6 C -0.29 -4.94 6.20 -37.10 -0.23 -5.17 16 7 C 0.59 12.28 7.58 -12.86 -0.10 12.19 16 8 O -0.52 -12.52 13.90 5.20 0.07 -12.45 16 9 N -0.58 -11.88 2.46 -176.60 -0.44 -12.31 16 10 C 0.22 5.26 4.17 -5.19 -0.02 5.24 16 11 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 12 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 15 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 19 C 0.13 2.02 5.21 -4.04 -0.02 2.00 16 20 C -0.18 -2.24 3.67 -90.62 -0.33 -2.58 16 21 C -0.17 -1.85 10.18 -26.69 -0.27 -2.12 16 22 C -0.17 -1.60 9.48 -26.69 -0.25 -1.85 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.10 1.83 5.87 -51.93 -0.31 1.52 16 26 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 28 H 0.04 1.08 6.56 -51.93 -0.34 0.74 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.08 1.10 4.95 -26.59 -0.13 0.97 16 31 H 0.10 1.61 7.77 -51.93 -0.40 1.21 16 32 H 0.11 1.44 7.69 -51.93 -0.40 1.04 16 33 H 0.10 1.11 8.03 -51.93 -0.42 0.69 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -33.33 308.63 -7.15 -40.48 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.51 Total: 0.93 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.25 Total: -4.66 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.22 Total: -46.28 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.07 Total: -12.45 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.65 Total: 0.88 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.33 -7.15 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.648 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds