Wall clock time and date at job start Tue Mar 31 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30941 * 122.90048 * 2 1 4 4 C 1.29435 * 117.36066 * 180.02562 * 3 2 1 5 5 S 1.70947 * 110.39243 * 359.72989 * 4 3 2 6 6 C 1.35661 * 122.90410 * 180.02562 * 2 1 3 7 7 C 1.46673 * 126.13367 * 359.96627 * 6 2 1 8 8 O 1.21692 * 120.00130 * 6.89102 * 7 6 2 9 9 N 1.34772 * 120.00466 * 186.88793 * 7 6 2 10 10 C 1.46500 * 120.00508 * 185.64983 * 9 7 6 11 11 C 1.50698 * 109.47411 * 270.00715 * 10 9 7 12 12 H 1.08000 * 120.00214 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99896 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00122 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00261 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47188 * 89.99910 * 15 13 11 17 17 H 1.48496 * 109.47182 * 210.00389 * 15 13 11 18 18 H 1.48501 * 109.46931 * 330.00551 * 15 13 11 19 19 C 1.46500 * 119.99875 * 5.65647 * 9 7 6 20 20 C 1.53003 * 109.47300 * 274.37070 * 19 9 7 21 21 C 1.52998 * 117.49800 * 243.75019 * 20 19 9 22 22 C 1.52997 * 117.50180 * 175.08508 * 20 19 9 23 23 H 1.08997 * 109.46846 * 269.96006 * 1 2 3 24 24 H 1.08998 * 109.47022 * 29.95879 * 1 2 3 25 25 H 1.08997 * 109.46867 * 149.96009 * 1 2 3 26 26 H 1.08000 * 124.80251 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47417 * 150.00180 * 10 9 7 28 28 H 1.09001 * 109.47108 * 30.00655 * 10 9 7 29 29 H 0.96998 * 120.00454 * 179.97438 * 14 13 11 30 30 H 1.09005 * 109.46861 * 34.36860 * 19 9 7 31 31 H 1.09001 * 109.47558 * 154.36591 * 19 9 7 32 32 H 1.09007 * 115.54485 * 29.41180 * 20 19 9 33 33 H 1.09007 * 117.49808 * 359.97438 * 21 20 19 34 34 H 1.08999 * 117.50200 * 145.02066 * 21 20 19 35 35 H 1.08997 * 117.49815 * 214.97888 * 22 20 19 36 36 H 1.08998 * 117.49382 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9744 -0.0005 5 16 3.9448 -0.6779 0.0065 6 6 2.2440 -1.1390 -0.0005 7 6 1.7193 -2.5086 -0.0004 8 8 0.5245 -2.7025 -0.1263 9 7 2.5603 -3.5525 0.1390 10 6 2.0549 -4.9220 0.0154 11 6 1.6155 -5.4194 1.3684 12 1 1.7043 -4.7796 2.2340 13 6 1.1012 -6.6917 1.5016 14 7 0.7183 -7.1260 2.6824 15 14 0.9483 -7.7987 0.0047 16 1 2.1958 -8.5881 -0.1567 17 1 -0.2012 -8.7211 0.1866 18 1 0.7289 -6.9669 -1.2057 19 6 3.9799 -3.3178 0.4143 20 6 4.7257 -3.0993 -0.9037 21 6 5.7963 -4.1226 -1.2876 22 6 6.2064 -2.7227 -0.8236 23 1 -0.3633 -0.0007 1.0276 24 1 -0.3633 0.8903 -0.5132 25 1 -0.3633 -0.8896 -0.5144 26 1 4.2058 1.7976 -0.0002 27 1 2.8442 -5.5673 -0.3702 28 1 1.2071 -4.9360 -0.6696 29 1 0.3561 -8.0209 2.7761 30 1 4.0867 -2.4338 1.0430 31 1 4.3981 -4.1826 0.9293 32 1 4.1374 -2.6600 -1.7095 33 1 5.9697 -4.9513 -0.6009 34 1 5.9129 -4.3562 -2.3458 35 1 6.5925 -2.0359 -1.5768 36 1 6.6491 -2.6301 0.1681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264012121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:48 Heat of formation + Delta-G solvation = 24.342736 kcal Electronic energy + Delta-G solvation = -20038.791635 eV Core-core repulsion = 17036.411261 eV Total energy + Delta-G solvation = -3002.380374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36340 -40.33074 -38.42674 -36.24829 -34.67127 -32.89219 -31.00845 -29.08555 -27.78008 -25.89528 -24.74033 -23.18506 -22.35761 -21.41420 -19.69441 -19.33084 -19.10286 -17.74061 -17.27369 -16.63571 -16.30176 -16.13517 -15.70367 -15.35981 -14.83991 -14.71837 -14.58119 -14.25146 -14.02518 -13.66579 -13.48447 -13.33131 -12.98223 -12.73157 -12.48359 -12.30214 -12.22809 -12.06415 -11.78818 -11.27385 -11.09982 -10.93246 -10.83121 -10.45165 -10.32576 -9.75940 -9.42714 -8.34863 -6.40675 -0.68544 0.31307 0.73093 1.31402 1.36278 1.46752 1.48130 2.05296 2.19370 2.30461 2.91978 2.99045 3.25628 3.50809 3.84109 3.95091 4.07033 4.12556 4.23824 4.32482 4.43893 4.66172 4.68385 4.74547 4.78905 4.86548 4.90364 4.91691 5.10411 5.23513 5.32295 5.37873 5.42520 5.52932 6.20198 6.45728 6.60471 6.68619 7.12866 7.26696 8.82229 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.006766 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.689306 B = 4137.372645 C = 5268.549284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.129 3.871 3 N -0.506 5.506 4 C -0.004 4.004 5 S 0.288 5.712 6 C -0.338 4.338 7 C 0.577 3.423 8 O -0.568 6.568 9 N -0.590 5.590 10 C 0.233 3.767 11 C -0.537 4.537 12 H 0.026 0.974 13 C 0.014 3.986 14 N -0.944 5.944 15 Si 0.947 3.053 16 H -0.249 1.249 17 H -0.282 1.282 18 H -0.255 1.255 19 C 0.125 3.875 20 C -0.200 4.200 21 C -0.174 4.174 22 C -0.141 4.141 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.242 0.758 27 H 0.054 0.946 28 H 0.022 0.978 29 H 0.269 0.731 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.928 13.368 -9.324 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.010 4.010 3 N -0.221 5.221 4 C -0.297 4.297 5 S 0.547 5.453 6 C -0.462 4.462 7 C 0.366 3.634 8 O -0.450 6.450 9 N -0.319 5.319 10 C 0.111 3.889 11 C -0.576 4.576 12 H 0.045 0.955 13 C -0.184 4.184 14 N -0.584 5.584 15 Si 0.769 3.231 16 H -0.173 1.173 17 H -0.208 1.208 18 H -0.179 1.179 19 C 0.001 3.999 20 C -0.221 4.221 21 C -0.211 4.211 22 C -0.179 4.179 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.258 0.742 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.139 0.861 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.061 13.167 -9.275 22.051 hybrid contribution -1.725 -0.768 0.104 1.891 sum 13.336 12.398 -9.171 20.388 Atomic orbital electron populations 1.20587 0.86891 1.04085 1.03299 1.20796 0.98970 0.85855 0.95378 1.66283 1.06654 1.30832 1.18362 1.29940 0.95322 1.05833 0.98565 1.84327 1.00414 0.97369 1.63200 1.25554 1.00142 0.97702 1.22812 1.17247 0.85663 0.83675 0.76847 1.90710 1.16378 1.85439 1.52447 1.47782 1.08983 1.06336 1.68806 1.19352 0.95081 0.78956 0.95515 1.21502 1.42649 0.99474 0.93955 0.95537 1.25828 0.93904 0.99430 0.99270 1.70049 1.43771 1.19184 1.25410 0.85731 0.79194 0.78698 0.79492 1.17253 1.20755 1.17917 1.21587 0.79347 1.02468 0.96469 1.22663 0.93013 1.07947 0.98465 1.23155 1.01560 0.93626 1.02727 1.23149 0.92511 0.97729 1.04485 0.90766 0.89205 0.90260 0.74231 0.92829 0.95973 0.92205 0.89622 0.88809 0.88192 0.88705 0.87878 0.86130 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.97 9.78 71.24 0.70 -2.27 16 2 C 0.13 4.32 6.79 42.10 0.29 4.60 16 3 N -0.51 -14.30 10.50 -190.40 -2.00 -16.30 16 4 C 0.00 -0.08 12.22 130.60 1.60 1.52 16 5 S 0.29 6.10 15.39 -56.49 -0.87 5.23 16 6 C -0.34 -11.63 6.20 23.88 0.15 -11.49 16 7 C 0.58 25.34 7.58 86.45 0.66 25.99 16 8 O -0.57 -29.55 13.90 -4.32 -0.06 -29.61 16 9 N -0.59 -24.78 2.46 -830.87 -2.05 -26.83 16 10 C 0.23 11.38 4.17 85.63 0.36 11.74 16 11 C -0.54 -31.78 9.94 25.60 0.25 -31.53 16 12 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 13 C 0.01 0.82 5.47 84.65 0.46 1.28 16 14 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 15 Si 0.95 44.07 27.47 68.60 1.88 45.95 16 16 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.26 -11.46 6.54 99.48 0.65 -10.81 16 19 C 0.13 3.83 5.21 86.38 0.45 4.28 16 20 C -0.20 -4.52 3.67 -10.79 -0.04 -4.56 16 21 C -0.17 -3.25 10.18 30.62 0.31 -2.94 16 22 C -0.14 -1.98 9.48 30.62 0.29 -1.69 16 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.08 3.03 5.87 -2.39 -0.01 3.01 16 26 H 0.24 2.24 8.06 -2.91 -0.02 2.22 16 27 H 0.05 2.35 7.50 -2.39 -0.02 2.34 16 28 H 0.02 1.17 6.56 -2.39 -0.02 1.16 16 29 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.09 2.38 4.95 -18.49 -0.09 2.28 16 31 H 0.09 2.96 7.77 -2.39 -0.02 2.95 16 32 H 0.10 2.47 7.69 -2.38 -0.02 2.45 16 33 H 0.09 1.88 8.03 -2.38 -0.02 1.86 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -78.54 308.63 3.63 -74.91 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.95 Total: 11.15 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.47 Total: -5.05 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -3.75 Total: -102.57 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.06 Total: -29.61 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -0.87 Total: 5.23 kcal Total: -78.54 3.63 -74.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.255 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds