Wall clock time and date at job start Tue Mar 31 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 C 1.50701 * 109.46744 * 119.99828 * 2 1 3 5 5 N 1.29368 * 124.70456 * 300.02223 * 4 2 1 6 6 C 1.30943 * 117.46857 * 179.69071 * 5 4 2 7 7 C 1.36782 * 113.92103 * 0.51988 * 6 5 4 8 8 C 1.46559 * 126.18176 * 179.78503 * 7 6 5 9 9 O 1.21728 * 119.99949 * 164.14962 * 8 7 6 10 10 N 1.34774 * 120.00192 * 344.14999 * 8 7 6 11 11 C 1.36890 * 120.00008 * 174.18213 * 10 8 7 12 12 H 1.07990 * 120.00003 * 226.26815 * 11 10 8 13 13 C 1.39003 * 119.99613 * 46.27774 * 11 10 8 14 14 N 1.31401 * 120.00268 * 12.36030 * 13 11 10 15 15 Si 1.86804 * 119.99863 * 192.35870 * 13 11 10 16 16 H 1.48500 * 109.47329 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47100 * 300.00267 * 15 13 11 18 18 H 1.48498 * 109.46924 * 60.00155 * 15 13 11 19 19 C 1.46504 * 119.99728 * 354.18760 * 10 8 7 20 20 C 1.52996 * 117.49520 * 182.75710 * 19 10 8 21 21 C 1.53003 * 117.49983 * 114.09784 * 19 10 8 22 22 S 1.70919 * 124.69994 * 120.00251 * 4 2 1 23 23 H 1.09000 * 109.46967 * 300.00262 * 1 2 3 24 24 H 1.08994 * 109.46766 * 59.99963 * 1 2 3 25 25 H 1.08996 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46967 * 239.99738 * 2 1 3 27 27 H 1.08997 * 109.47145 * 60.00436 * 3 2 1 28 28 H 1.08995 * 109.46727 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46801 * 299.99690 * 3 2 1 30 30 H 1.07998 * 123.04367 * 180.33702 * 6 5 4 31 31 H 0.97006 * 119.99655 * 174.98234 * 14 13 11 32 32 H 1.08999 * 115.55278 * 328.42605 * 19 10 8 33 33 H 1.09001 * 117.50396 * 359.97438 * 20 19 10 34 34 H 1.08998 * 117.49984 * 145.02298 * 20 19 10 35 35 H 1.08995 * 117.49891 * 214.97973 * 21 19 10 36 36 H 1.09008 * 117.49446 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7761 -0.3488 2.4459 6 6 2.2817 -1.0746 3.4114 7 6 3.0352 -2.1298 2.9757 8 6 3.7260 -3.1072 3.8214 9 8 4.1209 -4.1546 3.3431 10 7 3.9242 -2.8465 5.1288 11 6 4.4614 -3.8058 5.9443 12 1 4.0162 -4.0068 6.9074 13 6 5.5801 -4.5208 5.5327 14 7 6.2662 -4.1220 4.4854 15 14 6.1082 -6.0489 6.4686 16 1 7.3203 -6.6247 5.8326 17 1 6.4117 -5.6869 7.8764 18 1 5.0119 -7.0502 6.4403 19 6 3.5645 -1.5364 5.6771 20 6 3.8733 -1.2796 7.1534 21 6 2.4264 -1.4862 6.6984 22 16 3.0191 -2.1059 1.2138 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 2.1209 -0.8581 4.4571 31 1 7.0872 -4.5773 4.2413 32 1 3.6608 -0.6963 4.9892 33 1 4.3437 -2.0854 7.7168 34 1 4.1723 -0.2705 7.4369 35 1 1.7742 -0.6131 6.6827 36 1 1.9450 -2.4280 6.9621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269465501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:10 Heat of formation + Delta-G solvation = 32.810803 kcal Electronic energy + Delta-G solvation = -19854.087793 eV Core-core repulsion = 16852.074621 eV Total energy + Delta-G solvation = -3002.013171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20618 -39.96364 -37.84924 -36.27461 -34.85795 -33.04429 -30.90267 -27.99783 -27.27225 -26.50907 -23.97042 -23.31437 -22.45960 -22.12610 -20.32589 -18.79994 -18.33799 -17.74378 -16.74081 -16.32256 -16.07210 -15.73168 -15.48064 -15.21599 -15.05282 -14.56667 -14.49658 -13.72941 -13.68327 -13.02191 -12.95229 -12.88556 -12.77594 -12.57569 -12.53909 -12.27842 -12.14125 -12.07617 -11.90626 -11.60985 -11.29537 -10.90082 -10.66776 -10.35951 -10.09871 -9.74165 -9.07105 -8.22473 -6.09468 -0.56191 0.29339 0.83083 1.36780 1.44590 1.48831 1.65450 2.27415 2.57668 3.00972 3.05372 3.13389 3.30478 3.86057 3.95274 4.04458 4.08490 4.19177 4.22775 4.36368 4.41181 4.56384 4.83979 4.86693 4.89205 4.95395 4.99302 5.08381 5.17988 5.21522 5.38831 5.40321 5.43933 5.45541 6.12987 6.67514 6.91061 7.06389 7.52397 8.20624 8.83390 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.005512 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.413264 B = 5078.525325 C = 5818.097875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.018 4.018 3 C -0.135 4.135 4 C 0.046 3.954 5 N -0.479 5.479 6 C 0.057 3.943 7 C -0.284 4.284 8 C 0.523 3.477 9 O -0.577 6.577 10 N -0.418 5.418 11 C -0.353 4.353 12 H 0.090 0.910 13 C 0.013 3.987 14 N -0.861 5.861 15 Si 0.980 3.020 16 H -0.287 1.287 17 H -0.251 1.251 18 H -0.278 1.278 19 C 0.025 3.975 20 C -0.162 4.162 21 C -0.178 4.178 22 S 0.173 5.827 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.205 0.795 31 H 0.261 0.739 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 11.525 -5.219 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.040 4.040 3 C -0.193 4.193 4 C -0.230 4.230 5 N -0.192 5.192 6 C -0.099 4.099 7 C -0.409 4.409 8 C 0.312 3.688 9 O -0.459 6.459 10 N -0.137 5.137 11 C -0.481 4.481 12 H 0.108 0.892 13 C -0.194 4.194 14 N -0.496 5.496 15 Si 0.804 3.196 16 H -0.213 1.213 17 H -0.175 1.175 18 H -0.204 1.204 19 C -0.080 4.080 20 C -0.199 4.199 21 C -0.216 4.216 22 S 0.432 5.568 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.068 0.932 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.221 0.779 31 H 0.070 0.930 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.980 10.736 -6.344 15.367 hybrid contribution 0.699 -1.006 1.408 1.866 sum -8.281 9.731 -4.936 13.698 Atomic orbital electron populations 1.21788 0.91702 1.02262 1.03565 1.20120 0.97728 0.96462 0.89721 1.21788 1.00810 0.93169 1.03579 1.28102 0.99662 0.97186 0.98024 1.66069 1.23852 1.30566 0.98758 1.23386 0.95058 0.90146 1.01298 1.26345 1.11391 1.05116 0.98048 1.17065 0.82678 0.85782 0.83266 1.90631 1.53179 1.28842 1.73290 1.42647 1.54132 1.10486 1.06444 1.19248 1.11112 1.15682 1.02023 0.89244 1.26291 0.95451 1.01368 0.96271 1.70016 1.13467 1.40554 1.25535 0.85227 0.77136 0.78436 0.78820 1.21307 1.17525 1.20360 1.22362 1.05102 0.87802 0.92754 1.23217 0.98171 1.03416 0.95124 1.23459 0.91691 1.03750 1.02738 1.83835 1.45690 1.25823 1.01489 0.92476 0.88856 0.93160 0.87655 0.92444 0.93229 0.88848 0.77875 0.93009 0.86167 0.89308 0.86159 0.85297 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.17 71.98 0.66 -1.69 16 2 C -0.02 -0.37 3.35 -11.54 -0.04 -0.41 16 3 C -0.13 -2.38 9.17 71.98 0.66 -1.72 16 4 C 0.05 1.39 5.89 88.47 0.52 1.91 16 5 N -0.48 -15.96 10.48 -189.51 -1.99 -17.94 16 6 C 0.06 2.15 9.37 84.48 0.79 2.94 16 7 C -0.28 -12.75 6.27 24.10 0.15 -12.60 16 8 C 0.52 28.95 7.01 86.41 0.61 29.56 16 9 O -0.58 -36.96 14.40 -4.44 -0.06 -37.03 16 10 N -0.42 -21.73 2.82 -617.73 -1.74 -23.48 16 11 C -0.35 -19.48 7.91 84.09 0.67 -18.81 16 12 H 0.09 4.65 7.30 -2.92 -0.02 4.63 16 13 C 0.01 0.76 4.58 84.94 0.39 1.15 16 14 N -0.86 -53.38 11.28 21.67 0.24 -53.14 16 15 Si 0.98 45.20 29.57 68.60 2.03 47.23 16 16 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C 0.02 0.98 4.35 44.99 0.20 1.17 16 20 C -0.16 -5.43 9.81 30.62 0.30 -5.13 16 21 C -0.18 -5.52 9.42 30.62 0.29 -5.23 16 22 S 0.17 6.42 23.03 -56.49 -1.30 5.12 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 1.80 8.12 -2.39 -0.02 1.78 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.21 6.91 4.21 -2.91 -0.01 6.90 16 31 H 0.26 15.52 8.32 -92.70 -0.77 14.75 16 32 H 0.12 4.54 5.72 -2.39 -0.01 4.53 16 33 H 0.09 3.37 6.76 -2.39 -0.02 3.35 16 34 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.13 3.00 8.11 -2.39 -0.02 2.98 16 36 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -74.93 312.88 3.46 -71.47 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.09 Total: 16.64 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.19 Total: -8.87 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.48 Total: -94.56 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.06 Total: -37.03 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.30 Total: 5.12 kcal Total: -74.93 3.46 -71.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269465501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.281 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds