Wall clock time and date at job start Tue Mar 31 2020 01:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34979 * 127.26583 * 2 1 4 4 C 1.39536 * 111.68320 * 179.89526 * 3 2 1 5 5 C 1.47584 * 122.11200 * 180.18538 * 4 3 2 6 6 O 1.21607 * 120.00156 * 6.65169 * 5 4 3 7 7 N 1.34777 * 119.99937 * 186.65104 * 5 4 3 8 8 C 1.36902 * 119.99905 * 6.86580 * 7 5 4 9 9 H 1.07993 * 120.00200 * 234.31521 * 8 7 5 10 10 C 1.39031 * 119.99466 * 54.31811 * 8 7 5 11 11 N 1.31376 * 120.00262 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99575 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47245 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47021 * 120.00518 * 12 10 8 15 15 H 1.48501 * 109.47086 * 240.00298 * 12 10 8 16 16 C 1.46498 * 120.00390 * 186.87288 * 7 5 4 17 17 C 1.54266 * 110.03258 * 237.90702 * 16 7 5 18 18 C 1.54959 * 104.16133 * 217.13341 * 17 16 7 19 19 C 1.54894 * 102.77799 * 37.88667 * 18 17 16 20 20 C 1.53870 * 110.03536 * 120.68490 * 16 7 5 21 21 N 1.30659 * 115.77038 * 0.42068 * 4 3 2 22 22 S 1.56140 * 109.79386 * 359.76320 * 21 4 3 23 23 H 1.09003 * 109.46874 * 179.70994 * 1 2 3 24 24 H 1.08995 * 109.47315 * 59.70343 * 1 2 3 25 25 H 1.09003 * 109.46650 * 299.70304 * 1 2 3 26 26 H 1.08001 * 124.15467 * 0.04083 * 3 2 1 27 27 H 0.97002 * 119.99816 * 184.97048 * 11 10 8 28 28 H 1.09000 * 110.01266 * 359.29759 * 16 7 5 29 29 H 1.08994 * 110.48508 * 335.78389 * 17 16 7 30 30 H 1.09001 * 110.48725 * 98.41929 * 17 16 7 31 31 H 1.09002 * 110.71773 * 279.57597 * 18 17 16 32 32 H 1.09000 * 110.92647 * 156.29726 * 18 17 16 33 33 H 1.08995 * 110.48482 * 203.40744 * 19 18 17 34 34 H 1.08997 * 110.59627 * 80.81912 * 19 18 17 35 35 H 1.08997 * 110.03570 * 238.56973 * 20 16 7 36 36 H 1.08995 * 110.03314 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3243 1.0742 0.0000 4 6 3.6684 0.6994 0.0024 5 6 4.7599 1.6927 0.0069 6 8 4.5052 2.8754 0.1307 7 7 6.0389 1.2892 -0.1261 8 6 6.3175 -0.0217 -0.4057 9 1 6.9903 -0.5782 0.2298 10 6 5.7341 -0.6365 -1.5079 11 7 4.9160 0.0407 -2.2812 12 14 6.1136 -2.4254 -1.8890 13 1 7.0562 -2.9588 -0.8730 14 1 4.8564 -3.2151 -1.8601 15 1 6.7296 -2.5245 -3.2366 16 6 7.1311 2.2532 0.0286 17 6 7.9902 2.2885 -1.2522 18 6 9.4384 2.4717 -0.7324 19 6 9.4564 1.5985 0.5468 20 6 8.0628 1.8151 1.1721 21 7 3.8995 -0.5866 -0.0045 22 16 2.5471 -1.3669 -0.0077 23 1 -0.3633 -1.0277 -0.0052 24 1 -0.3634 0.5184 -0.8873 25 1 -0.3633 0.5092 0.8927 26 1 1.9802 2.0979 0.0006 27 1 4.4532 -0.4065 -3.0071 28 1 6.7274 3.2444 0.2349 29 1 7.8973 1.3507 -1.7998 30 1 7.7009 3.1294 -1.8825 31 1 9.6317 3.5167 -0.4896 32 1 10.1625 2.1056 -1.4603 33 1 10.2370 1.9363 1.2283 34 1 9.6014 0.5487 0.2924 35 1 8.1120 2.5941 1.9329 36 1 7.7026 0.8851 1.6117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277746803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:55 Heat of formation + Delta-G solvation = 0.456482 kcal Electronic energy + Delta-G solvation = -20669.579640 eV Core-core repulsion = 17666.163480 eV Total energy + Delta-G solvation = -3003.416160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26845 -39.48947 -37.99750 -36.03746 -33.72943 -33.17594 -29.48970 -28.96919 -28.73428 -26.93299 -25.52663 -21.94141 -21.42793 -21.15170 -20.65098 -19.11110 -18.17728 -17.44643 -17.03453 -16.29497 -16.01977 -15.90269 -15.57608 -14.87395 -14.70491 -14.30720 -14.16433 -13.77725 -13.72123 -13.40944 -13.22920 -12.95292 -12.82987 -12.60499 -12.28202 -12.09522 -11.88890 -11.83617 -11.77576 -11.54860 -11.42622 -11.29747 -10.78649 -10.33673 -9.87092 -9.45038 -9.07676 -8.20190 -6.04970 0.06288 0.82516 1.11064 1.36926 1.42139 1.45812 1.50702 2.31644 2.75789 3.04183 3.23969 3.84981 3.90713 3.98596 4.18661 4.38584 4.49436 4.57138 4.64904 4.75719 4.76985 4.79741 4.80755 4.91807 4.96104 5.05705 5.09110 5.15800 5.24563 5.29253 5.41491 5.48142 5.57744 5.60996 5.90088 6.10137 6.71463 7.11210 7.63162 8.05064 8.85029 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.007906 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.491975 B = 3540.546036 C = 4432.074815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.235 4.235 3 C -0.176 4.176 4 C 0.093 3.907 5 C 0.557 3.443 6 O -0.638 6.638 7 N -0.437 5.437 8 C -0.311 4.311 9 H 0.078 0.922 10 C 0.066 3.934 11 N -0.899 5.899 12 Si 0.950 3.050 13 H -0.259 1.259 14 H -0.271 1.271 15 H -0.285 1.285 16 C 0.122 3.878 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.121 4.121 21 N -0.451 5.451 22 S 0.361 5.639 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.263 0.737 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -3.085 3.740 5.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.366 4.366 3 C -0.210 4.210 4 C -0.082 4.082 5 C 0.344 3.656 6 O -0.526 6.526 7 N -0.154 5.154 8 C -0.442 4.442 9 H 0.095 0.905 10 C -0.140 4.140 11 N -0.536 5.536 12 Si 0.775 3.225 13 H -0.183 1.183 14 H -0.196 1.196 15 H -0.212 1.212 16 C 0.018 3.982 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.160 4.160 21 N -0.281 5.281 22 S 0.518 5.482 23 H 0.108 0.892 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.168 0.832 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.739 -4.547 3.623 5.860 hybrid contribution -0.465 1.276 -0.704 1.530 sum -1.204 -3.271 2.918 4.546 Atomic orbital electron populations 1.20287 0.83834 1.04342 1.03881 1.26186 1.04076 0.98722 1.07635 1.21186 0.90979 1.01469 1.07329 1.20659 0.94071 0.89575 1.03867 1.18059 0.83839 0.86006 0.77657 1.90521 1.84593 1.18731 1.58729 1.43390 1.02665 1.08892 1.60490 1.19000 1.30395 0.85889 1.08964 0.90470 1.25785 0.93893 1.01428 0.92885 1.69943 1.28232 1.36917 1.18542 0.85535 0.78864 0.80277 0.77871 1.18273 1.19579 1.21165 1.21884 0.87999 0.92130 0.96152 1.22496 0.95890 1.00689 0.96566 1.22415 0.94519 1.00420 0.97349 1.22233 0.95494 0.99940 0.96868 1.22358 0.95765 1.00933 0.96912 1.73663 1.22975 1.11014 1.20420 1.80270 0.90939 1.16253 1.60767 0.89220 0.90011 0.89141 0.83245 0.92777 0.92237 0.92375 0.93905 0.90363 0.90418 0.89404 0.92175 0.91065 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.51 10.46 71.24 0.75 -0.76 16 2 C -0.24 -8.25 6.58 24.94 0.16 -8.09 16 3 C -0.18 -7.73 9.93 21.83 0.22 -7.51 16 4 C 0.09 4.69 5.12 42.10 0.22 4.91 16 5 C 0.56 31.18 6.84 86.71 0.59 31.78 16 6 O -0.64 -37.83 16.04 -4.05 -0.07 -37.90 16 7 N -0.44 -22.86 2.40 -612.90 -1.47 -24.33 16 8 C -0.31 -16.07 6.10 84.09 0.51 -15.56 16 9 H 0.08 3.95 7.16 -2.91 -0.02 3.93 16 10 C 0.07 3.38 3.06 84.95 0.26 3.64 16 11 N -0.90 -49.46 10.89 21.68 0.24 -49.22 16 12 Si 0.95 41.41 29.34 68.60 2.01 43.42 16 13 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 15 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 16 C 0.12 5.52 3.29 45.71 0.15 5.67 16 17 C -0.12 -4.85 6.42 31.69 0.20 -4.65 16 18 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 19 C -0.11 -3.21 6.83 31.67 0.22 -2.99 16 20 C -0.12 -4.46 6.26 31.32 0.20 -4.27 16 21 N -0.45 -21.56 6.15 -75.22 -0.46 -22.02 16 22 S 0.36 13.57 23.20 -56.49 -1.31 12.26 16 23 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 26 H 0.15 6.45 8.00 -2.91 -0.02 6.43 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.06 2.88 6.96 -2.39 -0.02 2.87 16 29 H 0.06 2.72 7.03 -2.39 -0.02 2.70 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.05 2.18 6.93 -2.39 -0.02 2.16 16 Total: -1.00 -66.39 304.82 3.72 -62.67 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 1.08 Total: 16.04 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 3.69 Total: -0.92 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -1.70 Total: -95.57 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.07 Total: -37.90 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.01 Total: 43.42 kcal Atomic # 16 Polarization: 13.57 SS G_CDS: -1.31 Total: 12.26 kcal Total: -66.39 3.72 -62.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277746803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.129 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds