Wall clock time and date at job start Tue Mar 31 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99898 * 2 1 4 4 N 1.46901 * 109.47195 * 124.99533 * 3 2 1 5 5 C 1.46901 * 110.99975 * 189.99534 * 4 3 2 6 6 C 1.50701 * 109.46921 * 66.04817 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47094 * 90.00289 * 10 8 6 12 12 H 1.48505 * 109.47195 * 210.00171 * 10 8 6 13 13 H 1.48493 * 109.47449 * 330.00136 * 10 8 6 14 14 C 1.39850 * 110.99524 * 66.04427 * 4 3 2 15 15 C 1.38829 * 120.07985 * 63.68571 * 14 4 3 16 16 C 1.38152 * 119.94787 * 179.74139 * 15 14 4 17 17 C 1.38273 * 120.11201 * 0.50438 * 16 15 14 18 18 N 1.48011 * 119.92097 * 179.74758 * 17 16 15 19 19 O 1.21802 * 119.99766 * 180.02562 * 18 17 16 20 20 O 1.21802 * 119.99637 * 0.02562 * 18 17 16 21 21 C 1.38295 * 120.16126 * 359.76740 * 17 16 15 22 22 C 1.38275 * 120.04417 * 359.97438 * 21 17 16 23 23 F 1.35111 * 120.05249 * 179.97438 * 22 21 17 24 24 H 1.07999 * 120.00001 * 180.02562 * 1 2 3 25 25 H 1.08006 * 119.99594 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.99760 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47169 * 4.99803 * 3 2 1 28 28 H 1.08998 * 109.47051 * 244.99714 * 3 2 1 29 29 H 1.09002 * 109.47401 * 306.04845 * 5 4 3 30 30 H 1.09001 * 109.46874 * 186.04858 * 5 4 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 32 32 H 1.07996 * 120.02860 * 359.96549 * 15 14 4 33 33 H 1.07997 * 119.94620 * 180.24559 * 16 15 14 34 34 H 1.07997 * 119.97766 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3321 1.1346 5 6 3.5747 2.6711 1.3089 6 6 2.4912 3.6377 1.7125 7 1 1.4747 3.2917 1.8284 8 6 2.7979 4.9634 1.9348 9 7 4.0358 5.3845 1.7942 10 14 1.4550 6.1613 2.4358 11 1 1.3488 6.1949 3.9166 12 1 1.7888 7.5180 1.9325 13 1 0.1597 5.7234 1.8565 14 6 3.9988 0.3690 0.9820 15 6 4.8931 0.4571 -0.0762 16 6 5.8857 -0.4927 -0.2212 17 6 5.9836 -1.5370 0.6799 18 7 7.0453 -2.5554 0.5173 19 8 7.1325 -3.4760 1.3099 20 8 7.8316 -2.4727 -0.4092 21 6 5.0918 -1.6323 1.7325 22 6 4.0990 -0.6823 1.8870 23 9 3.2272 -0.7756 2.9150 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 4.0225 2.9984 0.3706 30 1 4.3398 2.6382 2.0846 31 1 4.2514 6.3173 1.9503 32 1 4.8152 1.2696 -0.7834 33 1 6.5838 -0.4220 -1.0422 34 1 5.1712 -2.4489 2.4348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291625652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:13 Heat of formation + Delta-G solvation = 9.699881 kcal Electronic energy + Delta-G solvation = -21490.530127 eV Core-core repulsion = 17921.301614 eV Total energy + Delta-G solvation = -3569.228512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = -0.11 seconds Orbital eigenvalues (eV) -48.78786 -42.18592 -39.82587 -36.99109 -36.58533 -33.52954 -32.78780 -31.06412 -30.59239 -27.50166 -26.44002 -24.67571 -23.43085 -22.49908 -21.04737 -19.64940 -19.48567 -18.75442 -17.56360 -16.92675 -16.59688 -16.33591 -15.96060 -15.75651 -15.11266 -14.83692 -14.36462 -13.92360 -13.77922 -12.98713 -12.74525 -12.61537 -12.49944 -12.16599 -11.92597 -11.58506 -11.44477 -11.18648 -11.16810 -11.01154 -10.87562 -10.63075 -10.26745 -9.69370 -9.36986 -9.26611 -8.93757 -8.68344 -7.94143 -6.26171 -4.29734 -0.22695 0.78356 1.28816 1.33829 2.44707 3.10039 3.19800 3.26732 3.28881 3.89193 4.12131 4.28570 4.38361 4.61148 4.75681 5.04716 5.06646 5.11136 5.29975 5.37440 5.53472 5.67989 5.71986 5.95302 6.01399 6.11197 6.21400 6.40099 6.75426 6.84077 6.87679 6.98001 7.47210 7.56255 7.62456 7.80998 8.14272 8.76120 9.35903 10.84460 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.004834 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.438745 B = 5790.377202 C = 6407.778337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.090 3.910 4 N -0.505 5.505 5 C 0.198 3.802 6 C -0.517 4.517 7 H 0.068 0.932 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.903 3.097 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.143 3.857 15 C -0.126 4.126 16 C -0.053 4.053 17 C -0.038 4.038 18 N 0.035 4.965 19 O -0.165 6.165 20 O -0.162 6.162 21 C -0.094 4.094 22 C 0.120 3.880 23 F -0.109 7.109 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.041 0.959 29 H 0.004 0.996 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -10.961 -4.530 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.166 4.166 3 C -0.035 4.035 4 N -0.227 5.227 5 C 0.076 3.924 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.730 3.270 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.046 3.954 15 C -0.147 4.147 16 C -0.073 4.073 17 C -0.122 4.122 18 N 0.554 4.446 19 O -0.380 6.380 20 O -0.378 6.378 21 C -0.114 4.114 22 C 0.099 3.901 23 F -0.087 7.087 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.069 -10.371 -3.963 11.154 hybrid contribution 0.037 0.619 -0.130 0.633 sum -1.032 -9.753 -4.093 10.627 Atomic orbital electron populations 1.23764 0.95746 1.01656 1.00984 1.22920 0.96234 0.97973 0.99517 1.21330 0.95428 0.96393 0.90343 1.60134 1.13999 1.07355 1.41191 1.19945 0.95829 0.79999 0.96618 1.21032 0.94922 0.92265 1.47290 0.91380 1.24973 0.95793 0.98322 0.95141 1.69937 1.17953 1.16578 1.48812 0.86418 0.81647 0.79939 0.78996 1.20425 1.21141 1.19681 1.19687 0.92444 0.92145 0.91095 1.21807 0.94340 0.99291 0.99289 1.20951 0.97880 0.90878 0.97618 1.20631 0.94765 0.94374 1.02388 1.43505 1.00813 1.00907 0.99412 1.94530 1.78424 1.25398 1.39670 1.94528 1.37394 1.81608 1.24250 1.20752 0.92915 1.00150 0.97611 1.17211 0.90147 0.94943 0.87839 1.91586 1.66476 1.95517 1.55104 0.88868 0.88197 0.88637 0.87655 0.94078 0.97790 0.94623 0.92538 0.82679 0.82689 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.32 29.01 0.42 -2.00 16 2 C -0.15 -2.15 9.24 -36.03 -0.33 -2.49 16 3 C 0.09 1.51 5.14 -4.98 -0.03 1.49 16 4 N -0.50 -9.65 4.31 -173.76 -0.75 -10.40 16 5 C 0.20 4.59 4.31 -4.97 -0.02 4.57 16 6 C -0.52 -13.22 8.37 -34.44 -0.29 -13.51 16 7 H 0.07 1.73 7.18 -52.49 -0.38 1.35 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 10 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 14 C 0.14 2.34 3.81 -83.67 -0.32 2.03 16 15 C -0.13 -1.77 8.59 -39.39 -0.34 -2.11 16 16 C -0.05 -0.67 9.55 -39.60 -0.38 -1.05 16 17 C -0.04 -0.52 6.85 -79.92 -0.55 -1.07 16 18 N 0.04 0.52 4.45 33.98 0.15 0.67 16 19 O -0.17 -2.49 18.44 -29.46 -0.54 -3.03 16 20 O -0.16 -2.42 18.44 -29.46 -0.54 -2.96 16 21 C -0.09 -1.27 9.53 -39.55 -0.38 -1.64 16 22 C 0.12 1.86 7.31 -39.26 -0.29 1.58 16 23 F -0.11 -1.84 17.08 2.25 0.04 -1.80 16 24 H 0.09 1.05 8.06 -52.49 -0.42 0.62 16 25 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 26 H 0.10 1.33 7.77 -52.49 -0.41 0.93 16 27 H 0.11 1.93 6.30 -51.93 -0.33 1.60 16 28 H 0.04 0.64 7.15 -51.93 -0.37 0.26 16 29 H 0.00 0.10 7.49 -51.93 -0.39 -0.29 16 30 H 0.04 0.91 8.06 -51.93 -0.42 0.49 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.16 2.05 7.13 -52.49 -0.37 1.68 16 33 H 0.16 1.63 7.60 -52.49 -0.40 1.23 16 34 H 0.16 1.90 7.60 -52.49 -0.40 1.50 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -27.55 309.84 -7.29 -34.84 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.43 Total: -0.54 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.60 Total: -12.72 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.14 Total: -33.74 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -1.09 Total: -6.00 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.55 -7.29 -34.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291625652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.540 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.10 seconds