Wall clock time and date at job start Tue Mar 31 2020 02:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99898 * 2 1 4 4 N 1.46901 * 109.47195 * 124.99533 * 3 2 1 5 5 C 1.46901 * 110.99975 * 189.99534 * 4 3 2 6 6 C 1.50701 * 109.46921 * 66.04817 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47094 * 90.00289 * 10 8 6 12 12 H 1.48505 * 109.47195 * 210.00171 * 10 8 6 13 13 H 1.48493 * 109.47449 * 330.00136 * 10 8 6 14 14 C 1.39850 * 110.99524 * 66.04427 * 4 3 2 15 15 C 1.38829 * 120.07985 * 63.68571 * 14 4 3 16 16 C 1.38152 * 119.94787 * 179.74139 * 15 14 4 17 17 C 1.38273 * 120.11201 * 0.50438 * 16 15 14 18 18 N 1.48011 * 119.92097 * 179.74758 * 17 16 15 19 19 O 1.21802 * 119.99766 * 180.02562 * 18 17 16 20 20 O 1.21802 * 119.99637 * 0.02562 * 18 17 16 21 21 C 1.38295 * 120.16126 * 359.76740 * 17 16 15 22 22 C 1.38275 * 120.04417 * 359.97438 * 21 17 16 23 23 F 1.35111 * 120.05249 * 179.97438 * 22 21 17 24 24 H 1.07999 * 120.00001 * 180.02562 * 1 2 3 25 25 H 1.08006 * 119.99594 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.99760 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47169 * 4.99803 * 3 2 1 28 28 H 1.08998 * 109.47051 * 244.99714 * 3 2 1 29 29 H 1.09002 * 109.47401 * 306.04845 * 5 4 3 30 30 H 1.09001 * 109.46874 * 186.04858 * 5 4 3 31 31 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 32 32 H 1.07996 * 120.02860 * 359.96549 * 15 14 4 33 33 H 1.07997 * 119.94620 * 180.24559 * 16 15 14 34 34 H 1.07997 * 119.97766 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3321 1.1346 5 6 3.5747 2.6711 1.3089 6 6 2.4912 3.6377 1.7125 7 1 1.4747 3.2917 1.8284 8 6 2.7979 4.9634 1.9348 9 7 4.0358 5.3845 1.7942 10 14 1.4550 6.1613 2.4358 11 1 1.3488 6.1949 3.9166 12 1 1.7888 7.5180 1.9325 13 1 0.1597 5.7234 1.8565 14 6 3.9988 0.3690 0.9820 15 6 4.8931 0.4571 -0.0762 16 6 5.8857 -0.4927 -0.2212 17 6 5.9836 -1.5370 0.6799 18 7 7.0453 -2.5554 0.5173 19 8 7.1325 -3.4760 1.3099 20 8 7.8316 -2.4727 -0.4092 21 6 5.0918 -1.6323 1.7325 22 6 4.0990 -0.6823 1.8870 23 9 3.2272 -0.7756 2.9150 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 4.0225 2.9984 0.3706 30 1 4.3398 2.6382 2.0846 31 1 4.2514 6.3173 1.9503 32 1 4.8152 1.2696 -0.7834 33 1 6.5838 -0.4220 -1.0422 34 1 5.1712 -2.4489 2.4348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291625652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:12 Heat of formation + Delta-G solvation = -4.065135 kcal Electronic energy + Delta-G solvation = -21491.127023 eV Core-core repulsion = 17921.301614 eV Total energy + Delta-G solvation = -3569.825408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04811 -43.34034 -41.07795 -38.31779 -37.74938 -35.08086 -34.34209 -32.20748 -31.93079 -29.21085 -27.66467 -26.17429 -24.68496 -23.88631 -22.46820 -20.81331 -20.65018 -19.91583 -18.72310 -18.66560 -17.81020 -17.51763 -17.44038 -17.16180 -16.58079 -16.27430 -15.51903 -15.44529 -15.01746 -14.35912 -14.23656 -13.91089 -13.80961 -13.59293 -13.31307 -12.91906 -12.77335 -12.73051 -12.63450 -12.33997 -12.32366 -12.11739 -11.90139 -11.48728 -10.68061 -10.58822 -10.42835 -10.15501 -9.44200 -8.26880 -6.36559 -1.39507 -0.33576 0.10571 0.18629 1.33153 1.41347 1.42878 1.52821 1.94823 2.36318 2.70420 2.91764 3.08286 3.25160 3.46669 3.62848 3.86302 3.94985 4.16323 4.22549 4.41003 4.48473 4.59151 4.73202 4.79226 4.94599 4.96159 5.07098 5.10130 5.26701 5.58089 5.66963 5.84923 5.93153 5.98337 6.42557 6.44343 6.76042 7.33254 8.83961 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020308 B = 0.004834 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.438745 B = 5790.377202 C = 6407.778337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.163 4.163 3 C 0.092 3.908 4 N -0.514 5.514 5 C 0.215 3.785 6 C -0.526 4.526 7 H 0.066 0.934 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.965 3.035 11 H -0.278 1.278 12 H -0.282 1.282 13 H -0.262 1.262 14 C 0.121 3.879 15 C -0.123 4.123 16 C -0.036 4.036 17 C -0.039 4.039 18 N 0.035 4.965 19 O -0.174 6.174 20 O -0.161 6.161 21 C -0.079 4.079 22 C 0.109 3.891 23 F -0.121 7.121 24 H 0.118 0.882 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.051 0.949 29 H -0.007 1.007 30 H 0.003 0.997 31 H 0.266 0.734 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 -11.888 -5.122 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C -0.033 4.033 4 N -0.236 5.236 5 C 0.092 3.908 6 C -0.565 4.565 7 H 0.084 0.916 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.790 3.210 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.186 1.186 14 C 0.025 3.975 15 C -0.144 4.144 16 C -0.056 4.056 17 C -0.122 4.122 18 N 0.553 4.447 19 O -0.387 6.387 20 O -0.377 6.377 21 C -0.099 4.099 22 C 0.088 3.912 23 F -0.099 7.099 24 H 0.136 0.864 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.010 0.990 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.179 0.821 33 H 0.199 0.801 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.600 -11.335 -4.554 12.320 hybrid contribution 0.227 0.826 0.017 0.856 sum -1.373 -10.509 -4.537 11.529 Atomic orbital electron populations 1.23992 0.95310 1.02813 0.98539 1.22794 0.96642 0.96979 1.01714 1.21296 0.94885 0.97120 0.89998 1.59899 1.15041 1.05800 1.42882 1.19504 0.94403 0.82158 0.94750 1.21352 0.95386 0.93030 1.46689 0.91612 1.25784 0.97775 1.00098 0.95179 1.70046 1.19783 1.16951 1.50112 0.85441 0.79377 0.77756 0.78440 1.20381 1.20784 1.18590 1.19753 0.92927 0.92214 0.92592 1.21802 0.94161 0.99789 0.98636 1.21149 0.97235 0.89525 0.97657 1.20714 0.94520 0.94382 1.02619 1.43574 1.00855 1.00937 0.99321 1.94538 1.78638 1.25703 1.39810 1.94528 1.37448 1.81567 1.24185 1.20825 0.91725 0.99759 0.97593 1.17264 0.90787 0.95555 0.87632 1.91551 1.67032 1.95648 1.55665 0.86382 0.88318 0.87853 0.89759 0.93135 0.98966 0.97843 0.92507 0.82086 0.80097 0.80154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 14.32 67.77 0.97 -3.16 16 2 C -0.16 -4.56 9.24 25.64 0.24 -4.33 16 3 C 0.09 3.08 5.14 85.56 0.44 3.52 16 4 N -0.51 -19.93 4.31 -703.64 -3.03 -22.96 16 5 C 0.22 10.28 4.31 85.56 0.37 10.65 16 6 C -0.53 -27.43 8.37 25.60 0.21 -27.21 16 7 H 0.07 3.38 7.18 -2.91 -0.02 3.36 16 8 C 0.01 0.57 5.46 84.66 0.46 1.03 16 9 N -0.93 -52.31 13.29 21.45 0.28 -52.03 16 10 Si 0.96 41.74 29.54 68.60 2.03 43.77 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 14 C 0.12 3.95 3.81 38.20 0.15 4.09 16 15 C -0.12 -3.32 8.59 22.39 0.19 -3.13 16 16 C -0.04 -0.83 9.55 22.26 0.21 -0.62 16 17 C -0.04 -0.98 6.85 36.40 0.25 -0.73 16 18 N 0.04 0.96 4.45 -46.42 -0.21 0.75 16 19 O -0.17 -4.89 18.44 18.88 0.35 -4.54 16 20 O -0.16 -4.40 18.44 18.88 0.35 -4.06 16 21 C -0.08 -1.99 9.53 22.29 0.21 -1.78 16 22 C 0.11 3.31 7.31 22.48 0.16 3.47 16 23 F -0.12 -4.05 17.08 44.97 0.77 -3.28 16 24 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 25 H 0.10 2.43 7.84 -2.91 -0.02 2.41 16 26 H 0.10 2.74 7.77 -2.91 -0.02 2.71 16 27 H 0.08 3.14 6.30 -2.39 -0.02 3.12 16 28 H 0.05 1.56 7.15 -2.39 -0.02 1.54 16 29 H -0.01 -0.36 7.49 -2.39 -0.02 -0.38 16 30 H 0.00 0.18 8.06 -2.39 -0.02 0.17 16 31 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.16 4.14 7.13 -2.91 -0.02 4.12 16 33 H 0.18 3.24 7.60 -2.91 -0.02 3.22 16 34 H 0.18 3.85 7.60 -2.91 -0.02 3.83 16 Total: -1.00 -58.86 309.84 5.53 -53.33 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.13 Total: 7.22 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 3.87 Total: -18.19 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -2.96 Total: -74.24 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.70 Total: -8.60 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.77 Total: -3.28 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -58.86 5.53 -53.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291625652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.263 kcal (2) G-P(sol) polarization free energy of solvation -58.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds