Wall clock time and date at job start Tue Mar 31 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99897 * 2 1 4 4 N 1.46504 * 109.47037 * 124.99921 * 3 2 1 5 5 C 1.46500 * 119.99700 * 262.26511 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.99584 * 5 4 3 7 7 H 1.07996 * 120.00396 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99876 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99669 * 180.02562 * 8 6 5 10 10 Si 1.86790 * 120.00134 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46966 * 90.00115 * 10 8 6 12 12 H 1.48504 * 109.47449 * 210.00074 * 10 8 6 13 13 H 1.48498 * 109.47472 * 330.00102 * 10 8 6 14 14 C 1.34777 * 119.99980 * 82.26527 * 4 3 2 15 15 O 1.21684 * 119.99812 * 182.49049 * 14 4 3 16 16 C 1.46684 * 119.99911 * 2.49130 * 14 4 3 17 17 S 1.76212 * 126.13006 * 351.76945 * 16 14 4 18 18 C 1.70955 * 90.31200 * 179.97438 * 17 16 14 19 19 N 1.29433 * 110.39084 * 0.02562 * 18 17 16 20 20 C 1.30940 * 117.36380 * 359.97438 * 19 18 17 21 21 C 1.50700 * 122.90283 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.46944 * 90.02765 * 21 20 19 23 23 H 1.07997 * 120.00367 * 179.97438 * 1 2 3 24 24 H 1.08008 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00153 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47634 * 5.00199 * 3 2 1 27 27 H 1.09003 * 109.47407 * 244.99633 * 3 2 1 28 28 H 1.09000 * 109.47491 * 29.99896 * 5 4 3 29 29 H 1.09006 * 109.46915 * 150.00038 * 5 4 3 30 30 H 0.97000 * 119.99383 * 179.97438 * 9 8 6 31 31 H 1.07996 * 124.80211 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.46944 * 210.02491 * 21 20 19 33 33 H 1.09002 * 109.46784 * 330.02764 * 21 20 19 34 34 H 1.08993 * 109.46959 * 59.99661 * 22 21 20 35 35 H 1.09004 * 109.46723 * 179.97438 * 22 21 20 36 36 H 1.09002 * 109.47008 * 299.99437 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6191 2.0159 2.3716 6 6 3.0570 3.4563 2.3028 7 1 3.5633 3.8254 1.4232 8 6 2.8112 4.3029 3.3630 9 7 3.1929 5.5601 3.3027 10 14 1.9363 3.6645 4.8847 11 1 2.9381 3.1478 5.8515 12 1 1.1659 4.7680 5.5125 13 1 1.0092 2.5700 4.5002 14 6 4.1941 0.7272 1.0314 15 8 4.9483 0.7104 1.9862 16 6 4.5913 0.0895 -0.2284 17 16 3.5613 -0.1612 -1.6360 18 6 4.8588 -0.9045 -2.4647 19 7 5.9151 -0.9312 -1.7172 20 6 5.8176 -0.4128 -0.5187 21 6 6.9680 -0.3779 0.4542 22 6 7.7596 0.9172 0.2616 23 1 -0.5400 -0.9352 -0.0004 24 1 -0.5401 0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 1.5376 1.9707 2.4992 29 1 3.1054 1.5284 3.2166 30 1 3.0197 6.1557 4.0484 31 1 4.8044 -1.2969 -3.4693 32 1 6.5834 -0.4205 1.4731 33 1 7.6205 -1.2326 0.2759 34 1 7.1070 1.7718 0.4397 35 1 8.5914 0.9426 0.9657 36 1 8.1442 0.9598 -0.7574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292441281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:14 Heat of formation + Delta-G solvation = 39.416208 kcal Electronic energy + Delta-G solvation = -19996.667495 eV Core-core repulsion = 16994.940756 eV Total energy + Delta-G solvation = -3001.726740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13111 -38.86352 -35.97322 -33.53906 -33.02856 -32.23253 -30.07008 -28.10375 -26.22691 -25.43089 -23.22223 -22.67768 -20.60027 -19.87634 -18.38759 -18.01044 -16.98578 -16.36910 -15.98824 -15.12785 -14.79268 -14.72781 -14.26410 -13.91985 -13.87055 -13.48211 -13.11343 -12.80154 -12.51555 -12.35748 -11.92300 -11.75530 -11.69163 -11.34974 -11.14329 -10.89529 -10.63564 -10.59486 -10.23521 -9.73663 -9.54942 -9.51414 -9.17624 -9.08763 -8.65089 -8.62079 -7.88804 -6.14058 -4.14007 0.44919 1.36386 1.75056 2.23981 2.70392 3.25620 3.31533 3.33792 3.56643 3.75641 4.27164 4.34734 4.79066 5.03121 5.11354 5.16510 5.19315 5.26199 5.36911 5.64822 5.70290 5.74525 5.80506 5.94194 6.17772 6.23618 6.52026 6.57464 6.58076 6.59622 6.70316 6.85298 7.17327 7.52432 7.75480 8.02342 8.38818 8.73268 8.89220 9.45145 10.99030 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.006695 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.439298 B = 4180.959828 C = 5254.410502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.179 4.179 3 C 0.127 3.873 4 N -0.581 5.581 5 C 0.219 3.781 6 C -0.533 4.533 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.894 5.894 10 Si 0.875 3.125 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.588 3.412 15 O -0.517 6.517 16 C -0.281 4.281 17 S 0.194 5.806 18 C -0.019 4.019 19 N -0.477 5.477 20 C 0.136 3.864 21 C -0.061 4.061 22 C -0.137 4.137 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.194 0.806 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -12.821 -10.946 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.199 4.199 3 C 0.001 3.999 4 N -0.311 5.311 5 C 0.099 3.901 6 C -0.572 4.572 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.532 5.532 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.373 3.627 15 O -0.395 6.395 16 C -0.405 4.405 17 S 0.451 5.549 18 C -0.313 4.313 19 N -0.191 5.191 20 C -0.001 4.001 21 C -0.101 4.101 22 C -0.195 4.195 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.211 0.789 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.467 -12.677 -10.877 16.885 hybrid contribution 0.176 -0.175 1.015 1.045 sum -2.292 -12.852 -9.862 16.361 Atomic orbital electron populations 1.23856 0.95465 1.02125 0.99351 1.23450 0.96670 0.98737 1.01080 1.20919 0.93261 0.96521 0.89190 1.47790 1.14458 1.52749 1.16061 1.19745 0.95726 0.93109 0.81473 1.21299 1.39164 0.92154 1.04549 0.90645 1.24832 0.95189 0.94675 0.98081 1.69894 1.46613 1.04616 1.32119 0.86874 0.80326 0.78832 0.83836 1.19788 1.20986 1.19002 1.16677 0.82084 0.78558 0.85361 1.90745 1.51179 1.59791 1.37794 1.25813 0.98686 1.15090 1.00933 1.84639 1.13986 1.50756 1.05488 1.29100 0.94775 1.02457 1.04946 1.66186 1.29551 1.19042 1.04316 1.20665 0.94216 0.93712 0.91511 1.20439 0.92566 0.98982 0.98091 1.21609 0.99816 0.97114 1.01005 0.88309 0.87983 0.87112 0.87606 0.90389 0.94852 0.94085 0.92461 0.78910 0.87340 0.90843 0.92031 0.91962 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 14.32 29.01 0.42 -1.46 16 2 C -0.18 -2.33 7.97 -36.03 -0.29 -2.61 16 3 C 0.13 2.00 5.43 -5.19 -0.03 1.97 16 4 N -0.58 -11.90 2.46 -177.97 -0.44 -12.34 16 5 C 0.22 5.23 4.21 -5.19 -0.02 5.21 16 6 C -0.53 -14.95 9.94 -34.44 -0.34 -15.29 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16 10 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 14 C 0.59 12.26 7.55 -12.85 -0.10 12.16 16 15 O -0.52 -12.30 13.83 5.20 0.07 -12.23 16 16 C -0.28 -4.84 6.23 -37.10 -0.23 -5.07 16 17 S 0.19 2.40 15.92 -107.50 -1.71 0.69 16 18 C -0.02 -0.22 12.22 51.75 0.63 0.41 16 19 N -0.48 -7.24 10.50 -11.53 -0.12 -7.36 16 20 C 0.14 2.28 6.04 -83.89 -0.51 1.77 16 21 C -0.06 -0.98 5.85 -27.88 -0.16 -1.15 16 22 C -0.14 -2.15 9.89 37.16 0.37 -1.78 16 23 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 24 H 0.10 1.08 7.84 -52.48 -0.41 0.66 16 25 H 0.11 1.41 6.95 -52.49 -0.37 1.05 16 26 H 0.11 1.67 7.67 -51.93 -0.40 1.27 16 27 H 0.08 1.14 4.50 -22.85 -0.10 1.04 16 28 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 29 H 0.04 1.04 6.81 -51.93 -0.35 0.69 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.94 5.85 -51.93 -0.30 1.64 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 311.83 15.07 4.70 4.70 Total: -1.00 -32.80 311.83 -6.19 -38.99 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.43 Total: 1.23 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.36 Total: -3.80 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.21 Total: -46.01 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.07 Total: -12.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.71 Total: 0.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.80 -6.19 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292441281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.406 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds