Wall clock time and date at job start Tue Mar 31 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99897 * 2 1 4 4 N 1.46504 * 109.47037 * 124.99921 * 3 2 1 5 5 C 1.46500 * 119.99700 * 262.26511 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.99584 * 5 4 3 7 7 H 1.07996 * 120.00396 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99876 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99669 * 180.02562 * 8 6 5 10 10 Si 1.86790 * 120.00134 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46966 * 90.00115 * 10 8 6 12 12 H 1.48504 * 109.47449 * 210.00074 * 10 8 6 13 13 H 1.48498 * 109.47472 * 330.00102 * 10 8 6 14 14 C 1.34777 * 119.99980 * 82.26527 * 4 3 2 15 15 O 1.21684 * 119.99812 * 182.49049 * 14 4 3 16 16 C 1.46684 * 119.99911 * 2.49130 * 14 4 3 17 17 S 1.76212 * 126.13006 * 351.76945 * 16 14 4 18 18 C 1.70955 * 90.31200 * 179.97438 * 17 16 14 19 19 N 1.29433 * 110.39084 * 0.02562 * 18 17 16 20 20 C 1.30940 * 117.36380 * 359.97438 * 19 18 17 21 21 C 1.50700 * 122.90283 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.46944 * 90.02765 * 21 20 19 23 23 H 1.07997 * 120.00367 * 179.97438 * 1 2 3 24 24 H 1.08008 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00153 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47634 * 5.00199 * 3 2 1 27 27 H 1.09003 * 109.47407 * 244.99633 * 3 2 1 28 28 H 1.09000 * 109.47491 * 29.99896 * 5 4 3 29 29 H 1.09006 * 109.46915 * 150.00038 * 5 4 3 30 30 H 0.97000 * 119.99383 * 179.97438 * 9 8 6 31 31 H 1.07996 * 124.80211 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.46944 * 210.02491 * 21 20 19 33 33 H 1.09002 * 109.46784 * 330.02764 * 21 20 19 34 34 H 1.08993 * 109.46959 * 59.99661 * 22 21 20 35 35 H 1.09004 * 109.46723 * 179.97438 * 22 21 20 36 36 H 1.09002 * 109.47008 * 299.99437 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6191 2.0159 2.3716 6 6 3.0570 3.4563 2.3028 7 1 3.5633 3.8254 1.4232 8 6 2.8112 4.3029 3.3630 9 7 3.1929 5.5601 3.3027 10 14 1.9363 3.6645 4.8847 11 1 2.9381 3.1478 5.8515 12 1 1.1659 4.7680 5.5125 13 1 1.0092 2.5700 4.5002 14 6 4.1941 0.7272 1.0314 15 8 4.9483 0.7104 1.9862 16 6 4.5913 0.0895 -0.2284 17 16 3.5613 -0.1612 -1.6360 18 6 4.8588 -0.9045 -2.4647 19 7 5.9151 -0.9312 -1.7172 20 6 5.8176 -0.4128 -0.5187 21 6 6.9680 -0.3779 0.4542 22 6 7.7596 0.9172 0.2616 23 1 -0.5400 -0.9352 -0.0004 24 1 -0.5401 0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 1.5376 1.9707 2.4992 29 1 3.1054 1.5284 3.2166 30 1 3.0197 6.1557 4.0484 31 1 4.8044 -1.2969 -3.4693 32 1 6.5834 -0.4205 1.4731 33 1 7.6205 -1.2326 0.2759 34 1 7.1070 1.7718 0.4397 35 1 8.5914 0.9426 0.9657 36 1 8.1442 0.9598 -0.7574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292441281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:13 Heat of formation + Delta-G solvation = 17.043591 kcal Electronic energy + Delta-G solvation = -19997.637645 eV Core-core repulsion = 16994.940756 eV Total energy + Delta-G solvation = -3002.696889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44319 -40.26133 -37.42381 -35.19970 -34.44083 -33.81491 -31.57495 -29.75901 -27.44817 -26.80390 -24.76428 -24.13049 -22.04297 -20.99676 -19.63804 -19.32830 -19.09596 -17.69763 -17.37360 -16.54514 -16.43253 -15.94313 -15.67236 -15.34602 -15.18878 -14.76045 -14.56220 -14.41434 -14.08352 -13.67005 -13.56231 -13.22019 -13.03638 -12.90917 -12.55570 -12.34848 -12.19835 -12.01236 -11.89129 -11.75735 -10.91558 -10.83603 -10.66897 -10.49448 -10.27392 -9.76944 -9.46381 -8.35218 -6.41336 -0.70627 0.24723 0.67586 1.24751 1.33308 1.37103 1.45153 1.49193 2.08763 2.29751 2.31106 2.98995 3.21023 3.52607 3.89581 4.00092 4.06512 4.12554 4.24413 4.36143 4.44472 4.59299 4.68178 4.75358 4.87896 4.92943 4.99932 5.02237 5.21568 5.31303 5.41085 5.44128 5.65841 5.81465 6.19774 6.43366 6.59961 6.66849 7.11885 7.26144 8.81593 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.006695 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.439298 B = 4180.959828 C = 5254.410502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.201 4.201 3 C 0.121 3.879 4 N -0.590 5.590 5 C 0.231 3.769 6 C -0.539 4.539 7 H 0.028 0.972 8 C 0.016 3.984 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.276 1.276 12 H -0.274 1.274 13 H -0.236 1.236 14 C 0.580 3.420 15 O -0.564 6.564 16 C -0.331 4.331 17 S 0.263 5.737 18 C 0.001 3.999 19 N -0.501 5.501 20 C 0.137 3.863 21 C -0.063 4.063 22 C -0.129 4.129 23 H 0.126 0.874 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.269 0.731 31 H 0.242 0.758 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.024 0.976 35 H 0.076 0.924 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -15.182 -12.513 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.221 4.221 3 C -0.002 4.002 4 N -0.319 5.319 5 C 0.109 3.891 6 C -0.578 4.578 7 H 0.046 0.954 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.768 3.232 11 H -0.202 1.202 12 H -0.199 1.199 13 H -0.159 1.159 14 C 0.368 3.632 15 O -0.446 6.446 16 C -0.455 4.455 17 S 0.522 5.478 18 C -0.292 4.292 19 N -0.215 5.215 20 C -0.002 4.002 21 C -0.103 4.103 22 C -0.187 4.187 23 H 0.144 0.856 24 H 0.126 0.874 25 H 0.133 0.867 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.258 0.742 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.553 -15.054 -12.504 20.092 hybrid contribution 0.805 0.571 1.318 1.647 sum -3.748 -14.484 -11.185 18.680 Atomic orbital electron populations 1.24149 0.94665 1.03708 0.95411 1.23197 0.97211 0.97088 1.04573 1.21156 0.92731 0.98420 0.87911 1.47835 1.15496 1.52272 1.16330 1.19386 0.96325 0.90428 0.82971 1.21500 1.38590 0.94602 1.03061 0.95370 1.25806 0.96057 0.94697 1.01730 1.70048 1.48400 1.06259 1.33537 0.85750 0.79416 0.79194 0.78839 1.20183 1.19908 1.15916 1.17189 0.81541 0.78146 0.86314 1.90698 1.52360 1.61662 1.39866 1.25510 1.00783 1.17340 1.01840 1.84235 1.12024 1.49501 1.02033 1.29942 0.93571 0.99702 1.05998 1.66269 1.30878 1.20447 1.03928 1.20761 0.94030 0.93170 0.92245 1.20393 0.93103 0.99747 0.97043 1.21533 0.99465 0.95559 1.02190 0.85606 0.87407 0.86738 0.87979 0.89625 0.92718 0.95773 0.92180 0.74204 0.89788 0.88781 0.95683 0.90483 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 14.32 67.78 0.97 -1.61 16 2 C -0.20 -4.71 7.97 25.65 0.20 -4.51 16 3 C 0.12 3.75 5.43 85.63 0.47 4.22 16 4 N -0.59 -24.73 2.46 -835.21 -2.06 -26.78 16 5 C 0.23 11.19 4.21 85.63 0.36 11.55 16 6 C -0.54 -31.54 9.94 25.60 0.25 -31.29 16 7 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 8 C 0.02 0.91 5.47 84.66 0.46 1.37 16 9 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 10 Si 0.95 43.80 27.47 68.60 1.88 45.69 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 14 C 0.58 25.22 7.55 86.45 0.65 25.88 16 15 O -0.56 -28.66 13.83 -4.30 -0.06 -28.72 16 16 C -0.33 -11.44 6.23 23.88 0.15 -11.29 16 17 S 0.26 5.86 15.92 -56.49 -0.90 4.96 16 18 C 0.00 0.02 12.22 130.60 1.60 1.61 16 19 N -0.50 -14.13 10.50 -190.40 -2.00 -16.13 16 20 C 0.14 4.55 6.04 42.09 0.25 4.81 16 21 C -0.06 -2.09 5.85 29.85 0.17 -1.92 16 22 C -0.13 -4.21 9.89 71.98 0.71 -3.49 16 23 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 24 H 0.11 1.87 7.84 -2.91 -0.02 1.85 16 25 H 0.11 2.63 6.95 -2.91 -0.02 2.61 16 26 H 0.10 3.16 7.67 -2.39 -0.02 3.14 16 27 H 0.09 2.43 4.50 -20.87 -0.09 2.34 16 28 H 0.05 2.41 7.13 -2.39 -0.02 2.39 16 29 H 0.02 1.26 6.81 -2.38 -0.02 1.24 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.24 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.08 3.21 5.85 -2.39 -0.01 3.20 16 33 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -76.60 311.83 4.37 -72.23 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.94 Total: 12.31 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 6.26 Total: -4.68 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -3.76 Total: -101.80 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.06 Total: -28.72 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -0.90 Total: 4.96 kcal Total: -76.60 4.37 -72.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292441281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.272 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds