Wall clock time and date at job start Tue Mar 31 2020 02:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 120.00166 * 2 1 4 4 N 1.46505 * 109.46972 * 125.00063 * 3 2 1 5 5 C 1.46496 * 119.99974 * 270.00319 * 4 3 2 6 6 C 1.50702 * 109.46974 * 269.99585 * 5 4 3 7 7 H 1.08001 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99695 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46785 * 59.99940 * 10 8 6 12 12 H 1.48498 * 109.46949 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46939 * 299.99978 * 10 8 6 14 14 C 1.34782 * 119.99642 * 89.99940 * 4 3 2 15 15 O 1.21281 * 119.99390 * 180.02562 * 14 4 3 16 16 C 1.50693 * 120.00183 * 0.02562 * 14 4 3 17 17 C 1.53002 * 109.47298 * 180.02562 * 16 14 4 18 18 C 1.50693 * 109.47298 * 179.97438 * 17 16 14 19 19 N 1.29027 * 124.91534 * 90.30653 * 18 17 16 20 20 C 1.31784 * 117.12400 * 180.22644 * 19 18 17 21 21 C 1.33641 * 114.49781 * 359.48088 * 20 19 18 22 22 S 1.70983 * 124.91700 * 269.99604 * 18 17 16 23 23 H 1.08007 * 119.99805 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00353 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99440 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47515 * 5.00370 * 3 2 1 27 27 H 1.08998 * 109.47137 * 244.99789 * 3 2 1 28 28 H 1.08998 * 109.47657 * 29.99564 * 5 4 3 29 29 H 1.09003 * 109.47273 * 150.00371 * 5 4 3 30 30 H 0.97009 * 119.99524 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47519 * 60.00281 * 16 14 4 32 32 H 1.08998 * 109.47153 * 299.99900 * 16 14 4 33 33 H 1.09003 * 109.47062 * 59.99557 * 17 16 14 34 34 H 1.09006 * 109.46638 * 300.00196 * 17 16 14 35 35 H 1.08002 * 122.75368 * 179.75456 * 20 19 18 36 36 H 1.08001 * 126.03830 * 180.26907 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5589 1.8647 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3035 3.8368 1.6366 8 6 2.5196 4.0663 3.6087 9 7 1.9610 3.4652 4.6365 10 14 2.8728 5.8993 3.6774 11 1 2.1361 6.5865 2.5865 12 1 2.4321 6.4395 4.9886 13 1 4.3306 6.1290 3.5115 14 6 4.2498 0.8659 0.9823 15 8 5.0197 0.8876 1.9192 16 6 4.6972 0.3182 -0.3483 17 6 6.1533 -0.1408 -0.2473 18 6 6.6006 -0.6891 -1.5778 19 7 7.1490 0.0060 -2.5163 20 6 7.4768 -0.6310 -3.6225 21 6 7.1987 -1.9381 -3.6124 22 16 6.4616 -2.3239 -2.0593 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6214 1.4025 -0.9313 28 1 1.4888 1.6965 2.5460 29 1 3.0991 1.3601 3.2260 30 1 1.7328 3.9738 5.4305 31 1 4.6127 1.0951 -1.1081 32 1 4.0681 -0.5285 -0.6228 33 1 6.2375 -0.9179 0.5124 34 1 6.7828 0.7057 0.0274 35 1 7.9367 -0.1380 -4.4663 36 1 7.3917 -2.6350 -4.4147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292570404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:43 Heat of formation + Delta-G solvation = 25.159089 kcal Electronic energy + Delta-G solvation = -19037.592824 eV Core-core repulsion = 16035.247849 eV Total energy + Delta-G solvation = -3002.344975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83940 -39.07714 -35.73879 -33.86858 -33.08368 -32.05090 -29.85446 -27.81015 -26.09394 -25.28468 -23.56792 -22.07293 -20.06767 -19.86599 -18.36505 -18.09101 -16.52270 -16.34843 -15.65925 -15.50942 -15.17261 -14.63919 -14.52863 -14.13799 -13.82972 -13.49541 -13.06481 -12.60570 -12.41954 -12.03303 -11.89816 -11.65673 -11.64674 -11.26350 -11.12823 -10.91454 -10.89002 -10.56519 -10.17512 -9.73402 -9.64499 -9.55015 -9.20332 -9.11560 -8.84325 -8.41455 -7.69382 -6.02731 -4.07480 0.56375 1.22593 1.61993 2.44284 2.70912 3.33428 3.37135 3.37991 3.43982 3.86839 4.18560 4.46844 4.86196 4.98592 5.10830 5.13697 5.20115 5.30870 5.33476 5.36724 5.41327 5.59316 5.73016 5.90518 6.01274 6.06139 6.16775 6.20392 6.78456 6.90602 7.08869 7.45672 7.55030 7.63125 7.93564 8.24893 8.39914 8.90498 9.07392 9.57560 11.05337 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.004109 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.943791 B = 6812.690818 C = 7577.434579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.592 5.592 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.508 3.492 15 O -0.540 6.540 16 C -0.134 4.134 17 C -0.031 4.031 18 C 0.066 3.934 19 N -0.476 5.476 20 C 0.041 3.959 21 C -0.270 4.270 22 S 0.115 5.885 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.174 0.826 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -12.045 -16.501 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.187 4.187 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.294 3.706 15 O -0.417 6.417 16 C -0.175 4.175 17 C -0.072 4.072 18 C -0.212 4.212 19 N -0.190 5.190 20 C -0.110 4.110 21 C -0.409 4.409 22 S 0.369 5.631 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.191 0.809 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.114 -12.321 -15.238 20.024 hybrid contribution 0.469 1.367 -0.856 1.680 sum 4.582 -10.954 -16.095 20.001 Atomic orbital electron populations 1.23820 0.95852 1.01763 1.00583 1.23421 0.96403 0.99012 0.99904 1.20595 0.93169 0.95343 0.89781 1.48218 1.10452 1.60050 1.13605 1.19274 0.95388 0.93749 0.78747 1.21409 1.40612 0.93360 1.01259 0.92477 1.24926 0.95036 0.98734 0.95327 1.69928 1.42044 1.36258 1.05147 0.86569 0.78874 0.84924 0.77127 1.20262 1.21192 1.20139 1.20173 0.82432 0.78705 0.89298 1.90681 1.52495 1.56556 1.42014 1.21691 0.95614 1.02343 0.97893 1.20063 0.96284 1.02780 0.88116 1.27298 1.00262 0.93235 1.00443 1.66328 1.13851 1.38029 1.00835 1.21846 1.01622 0.90869 0.96706 1.27057 1.10679 1.00788 1.02347 1.84090 1.56728 1.12648 1.09631 0.88281 0.88788 0.87803 0.89427 0.90744 0.94984 0.93844 0.92682 0.88776 0.89443 0.88741 0.87691 0.80872 0.80757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.91 16 2 C -0.17 -2.34 9.74 -36.03 -0.35 -2.69 16 3 C 0.14 2.17 5.65 -5.19 -0.03 2.14 16 4 N -0.59 -12.32 2.44 -176.44 -0.43 -12.75 16 5 C 0.25 6.44 5.16 -5.19 -0.03 6.42 16 6 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 10 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.51 10.22 7.67 -10.99 -0.08 10.14 16 15 O -0.54 -13.16 15.56 5.56 0.09 -13.08 16 16 C -0.13 -1.94 4.23 -27.89 -0.12 -2.05 16 17 C -0.03 -0.44 5.09 -27.89 -0.14 -0.58 16 18 C 0.07 0.83 6.64 -13.46 -0.09 0.74 16 19 N -0.48 -6.40 10.54 -11.86 -0.13 -6.52 16 20 C 0.04 0.43 11.35 -19.18 -0.22 0.21 16 21 C -0.27 -2.40 11.37 29.12 0.33 -2.07 16 22 S 0.12 1.15 23.18 -107.50 -2.49 -1.34 16 23 H 0.10 1.25 7.84 -52.48 -0.41 0.84 16 24 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 25 H 0.10 1.33 7.83 -52.49 -0.41 0.92 16 26 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 27 H 0.07 1.01 6.44 -51.93 -0.33 0.67 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 32 H 0.09 1.06 7.78 -51.93 -0.40 0.66 16 33 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.10 1.63 8.10 -51.93 -0.42 1.21 16 35 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -33.30 328.93 -7.83 -41.13 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.81 Total: -0.15 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.73 Total: -3.26 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.18 Total: -45.18 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.49 Total: -1.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.30 -7.83 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292570404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.285 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds