Wall clock time and date at job start Tue Mar 31 2020 02:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 120.00166 * 2 1 4 4 N 1.46505 * 109.46972 * 125.00063 * 3 2 1 5 5 C 1.46496 * 119.99974 * 270.00319 * 4 3 2 6 6 C 1.50702 * 109.46974 * 269.99585 * 5 4 3 7 7 H 1.08001 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99695 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46785 * 59.99940 * 10 8 6 12 12 H 1.48498 * 109.46949 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46939 * 299.99978 * 10 8 6 14 14 C 1.34782 * 119.99642 * 89.99940 * 4 3 2 15 15 O 1.21281 * 119.99390 * 180.02562 * 14 4 3 16 16 C 1.50693 * 120.00183 * 0.02562 * 14 4 3 17 17 C 1.53002 * 109.47298 * 180.02562 * 16 14 4 18 18 C 1.50693 * 109.47298 * 179.97438 * 17 16 14 19 19 N 1.29027 * 124.91534 * 90.30653 * 18 17 16 20 20 C 1.31784 * 117.12400 * 180.22644 * 19 18 17 21 21 C 1.33641 * 114.49781 * 359.48088 * 20 19 18 22 22 S 1.70983 * 124.91700 * 269.99604 * 18 17 16 23 23 H 1.08007 * 119.99805 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00353 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99440 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47515 * 5.00370 * 3 2 1 27 27 H 1.08998 * 109.47137 * 244.99789 * 3 2 1 28 28 H 1.08998 * 109.47657 * 29.99564 * 5 4 3 29 29 H 1.09003 * 109.47273 * 150.00371 * 5 4 3 30 30 H 0.97009 * 119.99524 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47519 * 60.00281 * 16 14 4 32 32 H 1.08998 * 109.47153 * 299.99900 * 16 14 4 33 33 H 1.09003 * 109.47062 * 59.99557 * 17 16 14 34 34 H 1.09006 * 109.46638 * 300.00196 * 17 16 14 35 35 H 1.08002 * 122.75368 * 179.75456 * 20 19 18 36 36 H 1.08001 * 126.03830 * 180.26907 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5589 1.8647 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3035 3.8368 1.6366 8 6 2.5196 4.0663 3.6087 9 7 1.9610 3.4652 4.6365 10 14 2.8728 5.8993 3.6774 11 1 2.1361 6.5865 2.5865 12 1 2.4321 6.4395 4.9886 13 1 4.3306 6.1290 3.5115 14 6 4.2498 0.8659 0.9823 15 8 5.0197 0.8876 1.9192 16 6 4.6972 0.3182 -0.3483 17 6 6.1533 -0.1408 -0.2473 18 6 6.6006 -0.6891 -1.5778 19 7 7.1490 0.0060 -2.5163 20 6 7.4768 -0.6310 -3.6225 21 6 7.1987 -1.9381 -3.6124 22 16 6.4616 -2.3239 -2.0593 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6214 1.4025 -0.9313 28 1 1.4888 1.6965 2.5460 29 1 3.0991 1.3601 3.2260 30 1 1.7328 3.9738 5.4305 31 1 4.6127 1.0951 -1.1081 32 1 4.0681 -0.5285 -0.6228 33 1 6.2375 -0.9179 0.5124 34 1 6.7828 0.7057 0.0274 35 1 7.9367 -0.1380 -4.4663 36 1 7.3917 -2.6350 -4.4147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292570404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:42 Heat of formation + Delta-G solvation = 4.026021 kcal Electronic energy + Delta-G solvation = -19038.509222 eV Core-core repulsion = 16035.247849 eV Total energy + Delta-G solvation = -3003.261373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95052 -40.42211 -37.27031 -35.30251 -34.70835 -33.65260 -30.91979 -29.53791 -27.27953 -26.77294 -24.99084 -23.58085 -21.16351 -20.78907 -19.87426 -19.00335 -18.60578 -17.76689 -17.28056 -16.62566 -16.32687 -16.26173 -15.71124 -15.38764 -15.03266 -14.65135 -14.37273 -14.17058 -13.75746 -13.66531 -13.34142 -13.03356 -12.95307 -12.84894 -12.55599 -12.38504 -12.27703 -12.20043 -12.08165 -11.68292 -10.69098 -10.63769 -10.56453 -10.34176 -10.29659 -9.79752 -9.46299 -8.21767 -6.36405 -0.24470 0.43777 0.84191 1.34343 1.37047 1.40979 1.48272 1.81531 1.88724 2.34779 2.49378 3.07853 3.18723 3.68612 3.96892 4.04738 4.08073 4.23021 4.31744 4.42218 4.45771 4.55054 4.59695 4.81502 4.88300 4.99364 5.05244 5.08312 5.24361 5.26520 5.52891 5.72634 5.77567 5.97342 6.07426 6.69370 6.77940 6.82633 7.28394 7.46508 8.85186 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020449 B = 0.004109 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.943791 B = 6812.690818 C = 7577.434579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.598 5.598 5 C 0.264 3.736 6 C -0.545 4.545 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.499 3.501 15 O -0.593 6.593 16 C -0.114 4.114 17 C -0.025 4.025 18 C 0.035 3.965 19 N -0.505 5.505 20 C 0.018 3.982 21 C -0.249 4.249 22 S 0.151 5.849 23 H 0.096 0.904 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.021 0.979 29 H -0.002 1.002 30 H 0.267 0.733 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.196 0.804 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 -12.877 -19.187 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C 0.010 3.990 4 N -0.328 5.328 5 C 0.143 3.857 6 C -0.584 4.584 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.289 3.711 15 O -0.474 6.474 16 C -0.155 4.155 17 C -0.066 4.066 18 C -0.242 4.242 19 N -0.220 5.220 20 C -0.132 4.132 21 C -0.388 4.388 22 S 0.405 5.595 23 H 0.115 0.885 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.039 0.961 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.213 0.787 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.895 -13.162 -17.971 22.613 hybrid contribution 0.518 1.527 -0.074 1.614 sum 4.414 -11.636 -18.044 21.920 Atomic orbital electron populations 1.24051 0.95588 1.02838 0.98358 1.23338 0.96784 0.98283 1.01829 1.20831 0.92707 0.96466 0.89021 1.48211 1.11778 1.59721 1.13091 1.18687 0.93871 0.92613 0.80512 1.21703 1.40684 0.94584 1.01410 0.92900 1.25830 0.94629 1.03654 0.94850 1.70047 1.42788 1.38154 1.05720 0.85506 0.78488 0.79150 0.77904 1.18508 1.20261 1.20387 1.21165 0.81481 0.77668 0.90829 1.90647 1.53839 1.58595 1.44338 1.21592 0.96474 1.03413 0.94036 1.19846 0.95388 1.01913 0.89502 1.26894 1.02264 0.95069 0.99931 1.66296 1.14158 1.39730 1.01852 1.22215 1.02616 0.91746 0.96650 1.27525 1.08227 1.00719 1.02363 1.83944 1.55881 1.09872 1.09844 0.88534 0.86416 0.86345 0.90640 0.87795 0.96079 0.98350 0.92400 0.87603 0.86269 0.88879 0.90365 0.78745 0.77321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 14.32 67.78 0.97 -3.04 16 2 C -0.18 -4.79 9.74 25.64 0.25 -4.54 16 3 C 0.13 4.14 5.65 85.63 0.48 4.62 16 4 N -0.60 -25.44 2.44 -830.52 -2.03 -27.47 16 5 C 0.26 14.42 5.16 85.63 0.44 14.86 16 6 C -0.55 -31.85 9.39 25.60 0.24 -31.61 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.55 5.46 84.65 0.46 1.01 16 9 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 10 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.50 20.64 7.67 87.65 0.67 21.31 16 15 O -0.59 -30.49 15.56 -3.03 -0.05 -30.53 16 16 C -0.11 -3.22 4.23 29.85 0.13 -3.10 16 17 C -0.03 -0.71 5.09 29.85 0.15 -0.56 16 18 C 0.04 0.85 6.64 88.52 0.59 1.44 16 19 N -0.50 -12.95 10.54 -191.45 -2.02 -14.97 16 20 C 0.02 0.33 11.35 83.66 0.95 1.28 16 21 C -0.25 -3.54 11.37 66.78 0.76 -2.78 16 22 S 0.15 2.61 23.18 -56.49 -1.31 1.30 16 23 H 0.10 2.31 7.84 -2.91 -0.02 2.28 16 24 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 25 H 0.12 2.75 7.83 -2.91 -0.02 2.73 16 26 H 0.08 2.53 7.72 -2.39 -0.02 2.51 16 27 H 0.10 2.61 6.44 -2.39 -0.02 2.59 16 28 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 29 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 30 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 31 H 0.11 2.78 7.40 -2.39 -0.02 2.76 16 32 H 0.12 2.62 7.78 -2.39 -0.02 2.60 16 33 H 0.09 2.56 8.10 -2.39 -0.02 2.55 16 34 H 0.08 2.57 8.10 -2.38 -0.02 2.55 16 35 H 0.20 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.21 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -75.54 328.93 4.07 -71.47 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.07 Total: 10.14 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 6.10 Total: -1.09 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -3.76 Total: -98.77 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.53 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.31 Total: 1.30 kcal Total: -75.54 4.07 -71.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292570404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.497 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds