Wall clock time and date at job start Tue Mar 31 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00067 * 2 1 4 4 N 1.46893 * 109.47123 * 123.06615 * 3 2 1 5 5 C 1.46903 * 111.00050 * 64.32510 * 4 3 2 6 6 C 1.50696 * 109.46894 * 66.04352 * 5 4 3 7 7 H 1.07999 * 120.00410 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99878 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00153 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99967 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47249 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46871 * 120.00077 * 10 8 6 13 13 H 1.48504 * 109.47283 * 240.00044 * 10 8 6 14 14 C 1.46901 * 111.00341 * 300.37134 * 4 3 2 15 15 C 1.50700 * 109.47026 * 288.20693 * 14 4 3 16 16 C 1.32771 * 124.71362 * 90.87440 * 15 14 4 17 17 C 1.44424 * 113.08570 * 179.76705 * 16 15 14 18 18 C 1.47192 * 123.46145 * 180.32301 * 17 16 15 19 19 N 1.34771 * 119.99646 * 180.19296 * 18 17 16 20 20 O 1.21631 * 120.00147 * 0.18492 * 18 17 16 21 21 C 1.36012 * 113.07312 * 0.46994 * 17 16 15 22 22 S 1.70445 * 110.81988 * 359.54657 * 21 17 16 23 23 H 1.07994 * 120.00123 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99747 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00077 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46646 * 3.07179 * 3 2 1 27 27 H 1.08993 * 109.47098 * 243.07099 * 3 2 1 28 28 H 1.08993 * 109.47325 * 186.04281 * 5 4 3 29 29 H 1.08998 * 109.47403 * 306.04654 * 5 4 3 30 30 H 0.97000 * 120.00517 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47169 * 168.20644 * 14 4 3 32 32 H 1.08997 * 109.47062 * 48.20761 * 14 4 3 33 33 H 1.07999 * 123.45302 * 0.02599 * 16 15 14 34 34 H 0.96997 * 120.00487 * 359.97438 * 19 18 17 35 35 H 0.97000 * 119.99821 * 179.97438 * 19 18 17 36 36 H 1.08008 * 124.58709 * 179.81397 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9627 1.3513 1.1606 5 6 3.9956 0.3108 1.0682 6 6 4.9017 0.6048 -0.0994 7 1 4.7276 1.4772 -0.7119 8 6 5.9526 -0.2404 -0.3865 9 7 6.1638 -1.3035 0.3583 10 14 7.0754 0.1237 -1.8343 11 1 6.6271 1.3691 -2.5074 12 1 8.4681 0.2976 -1.3491 13 1 7.0241 -1.0059 -2.7970 14 6 2.2087 1.2345 2.4159 15 6 1.4425 2.5086 2.6621 16 6 0.2008 2.7358 2.2506 17 6 -0.2916 4.0397 2.6290 18 6 -1.6407 4.5255 2.2967 19 7 -2.0269 5.7579 2.6820 20 8 -2.4069 3.8149 1.6744 21 6 0.6205 4.7737 3.3212 22 16 2.0680 3.8987 3.5320 23 1 -0.5400 0.9352 0.0004 24 1 -0.5400 -0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3565 2.1328 0.0551 27 1 2.6482 1.3870 -0.9162 28 1 4.5807 0.2969 1.9876 29 1 3.5214 -0.6601 0.9245 30 1 6.9028 -1.8984 0.1561 31 1 2.9002 1.0613 3.2404 32 1 1.5118 0.3995 2.3447 33 1 -0.3827 2.0174 1.6939 34 1 -1.4160 6.3246 3.1785 35 1 -2.9158 6.0783 2.4627 36 1 0.4491 5.7738 3.6912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292876544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:17 Heat of formation + Delta-G solvation = 16.071709 kcal Electronic energy + Delta-G solvation = -19271.779116 eV Core-core repulsion = 16269.040083 eV Total energy + Delta-G solvation = -3002.739033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71222 -37.98410 -36.24630 -33.87207 -32.95485 -32.28762 -30.36021 -27.02153 -26.26722 -24.99539 -23.62715 -21.38614 -20.57496 -19.16544 -18.98749 -17.91240 -16.91275 -16.46769 -16.00807 -15.19309 -14.92279 -14.76469 -14.51241 -14.24748 -13.86294 -13.22813 -13.17812 -12.76788 -12.42409 -12.23733 -11.95960 -11.42008 -11.31775 -10.87366 -10.80755 -10.76418 -10.62700 -10.44224 -10.04872 -9.90485 -9.87269 -9.32223 -8.89687 -8.68994 -8.45414 -8.31174 -7.31263 -6.05440 -4.06407 0.80742 1.64882 2.05833 2.13246 2.76356 3.29907 3.37011 3.37847 3.42592 3.42849 4.41362 4.70352 4.94620 5.07788 5.26578 5.32059 5.42393 5.50579 5.65480 5.76248 5.95944 6.08393 6.12680 6.30083 6.45390 6.46298 6.61067 6.65976 7.05711 7.13228 7.17139 7.32844 7.33898 7.76496 8.01869 8.12751 8.14798 8.48011 9.01021 9.57890 11.05329 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.004378 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.304793 B = 6394.630753 C = 6899.278610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C 0.083 3.917 4 N -0.523 5.523 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.113 3.887 15 C -0.161 4.161 16 C -0.102 4.102 17 C -0.157 4.157 18 C 0.584 3.416 19 N -0.854 5.854 20 O -0.541 6.541 21 C -0.232 4.232 22 S 0.215 5.785 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.399 0.601 35 H 0.403 0.597 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 12.254 7.665 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.183 4.183 3 C -0.045 4.045 4 N -0.246 5.246 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.017 4.017 15 C -0.279 4.279 16 C -0.130 4.130 17 C -0.177 4.177 18 C 0.369 3.631 19 N -0.418 5.418 20 O -0.419 6.419 21 C -0.371 4.371 22 S 0.483 5.517 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.130 0.870 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.169 0.831 34 H 0.227 0.773 35 H 0.234 0.766 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.483 12.281 7.997 18.019 hybrid contribution -1.207 -0.481 -1.300 1.838 sum -11.690 11.801 6.696 17.910 Atomic orbital electron populations 1.23767 0.95970 1.01053 1.04080 1.23872 0.96183 1.01380 0.96863 1.21332 0.94429 0.92623 0.96071 1.62417 1.12072 1.51279 0.98815 1.19811 0.88188 0.87482 0.98014 1.21164 1.11469 1.09345 1.12398 0.91780 1.24962 0.97644 0.95039 0.96840 1.69959 1.30758 1.13968 1.39113 0.86469 0.80528 0.78249 0.82359 1.19643 1.21039 1.21137 1.20599 0.95798 0.90045 0.95218 1.24531 0.97684 1.01018 1.04624 1.21068 0.94938 0.95579 1.01439 1.20078 0.95005 0.96306 1.06276 1.17718 0.86294 0.81136 0.77997 1.43686 1.19865 1.17350 1.60879 1.90829 1.54608 1.56174 1.40241 1.25611 1.00235 1.04903 1.06339 1.83159 1.12022 1.05523 1.51029 0.88903 0.89367 0.87048 0.91986 0.88954 0.95213 0.98269 0.92975 0.90185 0.92811 0.83143 0.77253 0.76642 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.35 13.80 29.01 0.40 -2.95 16 2 C -0.16 -2.97 7.40 -36.03 -0.27 -3.24 16 3 C 0.08 1.61 5.43 -4.98 -0.03 1.58 16 4 N -0.52 -10.75 4.65 -238.98 -1.11 -11.86 16 5 C 0.19 4.69 4.56 -4.98 -0.02 4.67 16 6 C -0.51 -13.70 8.45 -34.44 -0.29 -13.99 16 7 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 10 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.11 1.97 5.29 -4.98 -0.03 1.95 16 15 C -0.16 -2.45 5.52 -36.18 -0.20 -2.65 16 16 C -0.10 -1.54 8.69 -39.02 -0.34 -1.88 16 17 C -0.16 -2.07 5.98 -104.63 -0.63 -2.69 16 18 C 0.58 7.63 8.06 -12.63 -0.10 7.53 16 19 N -0.85 -6.83 8.84 30.38 0.27 -6.56 16 20 O -0.54 -9.26 17.63 5.25 0.09 -9.16 16 21 C -0.23 -2.46 10.38 29.93 0.31 -2.15 16 22 S 0.22 2.65 23.00 -107.50 -2.47 0.18 16 23 H 0.09 1.44 6.63 -52.49 -0.35 1.09 16 24 H 0.09 1.28 8.06 -52.48 -0.42 0.86 16 25 H 0.11 2.23 6.84 -52.48 -0.36 1.87 16 26 H 0.06 1.13 6.22 -51.93 -0.32 0.80 16 27 H 0.09 1.95 6.75 -51.93 -0.35 1.60 16 28 H 0.03 0.79 7.86 -51.93 -0.41 0.38 16 29 H 0.00 -0.01 6.36 -51.93 -0.33 -0.34 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.08 1.37 7.81 -51.93 -0.41 0.96 16 32 H 0.05 0.94 6.69 -51.93 -0.35 0.59 16 33 H 0.15 2.41 6.25 -52.49 -0.33 2.08 16 34 H 0.40 2.00 7.33 -40.82 -0.30 1.71 16 35 H 0.40 2.61 8.93 -40.82 -0.36 2.25 16 36 H 0.16 1.08 7.01 -52.48 -0.37 0.71 16 LS Contribution 315.46 15.07 4.75 4.75 Total: -1.00 -31.69 315.46 -8.20 -39.90 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.16 Total: 4.10 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.29 Total: -12.34 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.11 Total: -43.72 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.47 Total: 0.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.69 -8.20 -39.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292876544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.968 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds