Wall clock time and date at job start Tue Mar 31 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00067 * 2 1 4 4 N 1.46893 * 109.47123 * 123.06615 * 3 2 1 5 5 C 1.46903 * 111.00050 * 64.32510 * 4 3 2 6 6 C 1.50696 * 109.46894 * 66.04352 * 5 4 3 7 7 H 1.07999 * 120.00410 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99878 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00153 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99967 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47249 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46871 * 120.00077 * 10 8 6 13 13 H 1.48504 * 109.47283 * 240.00044 * 10 8 6 14 14 C 1.46901 * 111.00341 * 300.37134 * 4 3 2 15 15 C 1.50700 * 109.47026 * 288.20693 * 14 4 3 16 16 C 1.32771 * 124.71362 * 90.87440 * 15 14 4 17 17 C 1.44424 * 113.08570 * 179.76705 * 16 15 14 18 18 C 1.47192 * 123.46145 * 180.32301 * 17 16 15 19 19 N 1.34771 * 119.99646 * 180.19296 * 18 17 16 20 20 O 1.21631 * 120.00147 * 0.18492 * 18 17 16 21 21 C 1.36012 * 113.07312 * 0.46994 * 17 16 15 22 22 S 1.70445 * 110.81988 * 359.54657 * 21 17 16 23 23 H 1.07994 * 120.00123 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99747 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00077 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46646 * 3.07179 * 3 2 1 27 27 H 1.08993 * 109.47098 * 243.07099 * 3 2 1 28 28 H 1.08993 * 109.47325 * 186.04281 * 5 4 3 29 29 H 1.08998 * 109.47403 * 306.04654 * 5 4 3 30 30 H 0.97000 * 120.00517 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47169 * 168.20644 * 14 4 3 32 32 H 1.08997 * 109.47062 * 48.20761 * 14 4 3 33 33 H 1.07999 * 123.45302 * 0.02599 * 16 15 14 34 34 H 0.96997 * 120.00487 * 359.97438 * 19 18 17 35 35 H 0.97000 * 119.99821 * 179.97438 * 19 18 17 36 36 H 1.08008 * 124.58709 * 179.81397 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9627 1.3513 1.1606 5 6 3.9956 0.3108 1.0682 6 6 4.9017 0.6048 -0.0994 7 1 4.7276 1.4772 -0.7119 8 6 5.9526 -0.2404 -0.3865 9 7 6.1638 -1.3035 0.3583 10 14 7.0754 0.1237 -1.8343 11 1 6.6271 1.3691 -2.5074 12 1 8.4681 0.2976 -1.3491 13 1 7.0241 -1.0059 -2.7970 14 6 2.2087 1.2345 2.4159 15 6 1.4425 2.5086 2.6621 16 6 0.2008 2.7358 2.2506 17 6 -0.2916 4.0397 2.6290 18 6 -1.6407 4.5255 2.2967 19 7 -2.0269 5.7579 2.6820 20 8 -2.4069 3.8149 1.6744 21 6 0.6205 4.7737 3.3212 22 16 2.0680 3.8987 3.5320 23 1 -0.5400 0.9352 0.0004 24 1 -0.5400 -0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3565 2.1328 0.0551 27 1 2.6482 1.3870 -0.9162 28 1 4.5807 0.2969 1.9876 29 1 3.5214 -0.6601 0.9245 30 1 6.9028 -1.8984 0.1561 31 1 2.9002 1.0613 3.2404 32 1 1.5118 0.3995 2.3447 33 1 -0.3827 2.0174 1.6939 34 1 -1.4160 6.3246 3.1785 35 1 -2.9158 6.0783 2.4627 36 1 0.4491 5.7738 3.6912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292876544.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:17 Heat of formation + Delta-G solvation = -7.509064 kcal Electronic energy + Delta-G solvation = -19272.801655 eV Core-core repulsion = 16269.040083 eV Total energy + Delta-G solvation = -3003.761572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71667 -39.44249 -37.45708 -34.95618 -34.72718 -33.82814 -31.70741 -28.85032 -27.67387 -26.07457 -25.29682 -22.99562 -21.73974 -20.53139 -20.13925 -18.88571 -18.35118 -17.88283 -17.17807 -16.83491 -16.58891 -15.94366 -15.81555 -15.54604 -15.38390 -14.73854 -14.46213 -14.00382 -13.87138 -13.54525 -13.29971 -13.20927 -12.78461 -12.65037 -12.55968 -12.27050 -12.19724 -11.91627 -11.76847 -11.32270 -11.06668 -10.70639 -10.60997 -10.31598 -9.81121 -9.31214 -9.00560 -8.17965 -6.26445 -0.15822 0.63284 0.96662 1.07254 1.34964 1.41486 1.42768 1.55554 2.37272 2.42597 2.62420 3.15337 3.44496 3.80904 4.04069 4.10350 4.16407 4.23804 4.32960 4.48593 4.58021 4.69594 4.87180 4.94385 5.06000 5.15918 5.23987 5.32167 5.37215 5.64486 5.70628 5.79302 5.89825 6.08337 6.30776 6.45048 6.60071 6.88833 7.33184 7.42530 8.92947 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.004378 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.304793 B = 6394.630753 C = 6899.278610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.187 4.187 3 C 0.092 3.908 4 N -0.527 5.527 5 C 0.206 3.794 6 C -0.517 4.517 7 H 0.061 0.939 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.119 3.881 15 C -0.192 4.192 16 C -0.103 4.103 17 C -0.182 4.182 18 C 0.582 3.418 19 N -0.827 5.827 20 O -0.592 6.592 21 C -0.196 4.196 22 S 0.242 5.758 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.006 0.994 29 H -0.023 1.023 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.135 0.865 34 H 0.417 0.583 35 H 0.413 0.587 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 14.907 8.058 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C -0.036 4.036 4 N -0.249 5.249 5 C 0.080 3.920 6 C -0.555 4.555 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.207 1.207 14 C -0.011 4.011 15 C -0.309 4.309 16 C -0.133 4.133 17 C -0.201 4.201 18 C 0.367 3.633 19 N -0.391 5.391 20 O -0.474 6.474 21 C -0.335 4.335 22 S 0.509 5.491 23 H 0.120 0.880 24 H 0.125 0.875 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.024 0.976 29 H -0.006 1.006 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.249 0.751 35 H 0.246 0.754 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -11.237 14.995 8.417 20.542 hybrid contribution -1.061 -1.220 -1.328 2.092 sum -12.299 13.776 7.089 19.781 Atomic orbital electron populations 1.23910 0.94932 1.02330 1.00221 1.23556 0.96874 0.99790 1.00444 1.21190 0.94079 0.93752 0.94537 1.62308 1.12580 1.49339 1.00708 1.19427 0.88778 0.87663 0.96095 1.21450 1.11973 1.09163 1.12958 0.92115 1.25802 0.99176 0.94791 0.99495 1.70075 1.31524 1.14948 1.40838 0.85424 0.78490 0.78256 0.78998 1.18891 1.20399 1.20724 1.20477 0.95443 0.91726 0.93424 1.24244 0.98016 1.01559 1.07099 1.21082 0.94705 0.96509 1.01002 1.20017 0.95930 0.96003 1.08127 1.17757 0.85830 0.82061 0.77639 1.43442 1.20647 1.15702 1.59345 1.90806 1.55809 1.57907 1.42887 1.26087 0.98205 1.06024 1.03204 1.83107 1.12330 1.03882 1.49783 0.88003 0.87454 0.89467 0.90581 0.91327 0.97600 1.00577 0.92793 0.90559 0.93395 0.84734 0.75133 0.75426 0.77135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.53 13.80 67.78 0.94 -4.59 16 2 C -0.19 -7.02 7.40 25.65 0.19 -6.83 16 3 C 0.09 3.67 5.43 85.56 0.46 4.13 16 4 N -0.53 -22.40 4.65 -909.99 -4.23 -26.63 16 5 C 0.21 10.71 4.56 85.56 0.39 11.10 16 6 C -0.52 -28.86 8.45 25.60 0.22 -28.64 16 7 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 8 C 0.01 0.30 5.46 84.66 0.46 0.76 16 9 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 10 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 C 0.12 4.26 5.29 85.56 0.45 4.71 16 15 C -0.19 -5.74 5.52 24.51 0.14 -5.61 16 16 C -0.10 -3.06 8.69 22.67 0.20 -2.86 16 17 C -0.18 -4.37 5.98 -19.87 -0.12 -4.49 16 18 C 0.58 13.98 8.06 86.60 0.70 14.68 16 19 N -0.83 -10.35 8.84 -176.05 -1.56 -11.91 16 20 O -0.59 -19.85 17.63 -4.13 -0.07 -19.93 16 21 C -0.20 -3.38 10.38 67.30 0.70 -2.68 16 22 S 0.24 5.39 23.00 -56.49 -1.30 4.09 16 23 H 0.10 3.07 6.63 -2.91 -0.02 3.05 16 24 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 25 H 0.09 3.71 6.84 -2.91 -0.02 3.69 16 26 H 0.08 2.79 6.22 -2.39 -0.01 2.77 16 27 H 0.07 3.01 6.75 -2.39 -0.02 3.00 16 28 H 0.01 0.33 7.86 -2.39 -0.02 0.31 16 29 H -0.02 -1.31 6.36 -2.39 -0.02 -1.32 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.08 2.72 7.81 -2.39 -0.02 2.70 16 32 H 0.05 1.75 6.69 -2.39 -0.02 1.73 16 33 H 0.14 4.33 6.25 -2.91 -0.02 4.31 16 34 H 0.42 2.19 7.33 -92.71 -0.68 1.51 16 35 H 0.41 4.05 8.93 -92.71 -0.83 3.22 16 36 H 0.21 1.48 7.01 -2.91 -0.02 1.46 16 Total: -1.00 -71.21 315.46 -0.51 -71.71 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -0.38 Total: 11.99 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 4.72 Total: -20.33 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -5.50 Total: -93.73 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.07 Total: -19.93 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.30 Total: 4.09 kcal Total: -71.21 -0.51 -71.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292876544.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.201 kcal (2) G-P(sol) polarization free energy of solvation -71.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds