Wall clock time and date at job start Tue Mar 31 2020 02:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 N 1.46504 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.37093 * 120.00271 * 269.99782 * 4 3 2 6 6 H 1.07994 * 120.00291 * 143.45131 * 5 4 3 7 7 C 1.38950 * 120.00033 * 323.44886 * 5 4 3 8 8 N 1.31408 * 120.00530 * 159.84256 * 7 5 4 9 9 Si 1.86810 * 119.99933 * 339.84756 * 7 5 4 10 10 H 1.48502 * 109.47050 * 95.44488 * 9 7 5 11 11 H 1.48497 * 109.47217 * 215.44602 * 9 7 5 12 12 H 1.48497 * 109.46984 * 335.44524 * 9 7 5 13 13 C 1.34779 * 119.99691 * 89.99912 * 4 3 2 14 14 O 1.21294 * 120.00213 * 354.66352 * 13 4 3 15 15 C 1.50701 * 119.99805 * 174.66537 * 13 4 3 16 16 S 1.81400 * 109.47101 * 185.38693 * 15 13 4 17 17 C 1.76201 * 102.99775 * 184.70230 * 16 15 13 18 18 C 1.39542 * 120.87557 * 354.29460 * 17 16 15 19 19 C 1.37864 * 119.06215 * 180.29424 * 18 17 16 20 20 N 1.32017 * 120.85069 * 359.97307 * 19 18 17 21 21 C 1.32018 * 121.92041 * 0.02562 * 20 19 18 22 22 C 1.37862 * 120.85194 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47564 * 300.00705 * 1 2 3 25 25 H 1.09000 * 109.46641 * 60.00884 * 1 2 3 26 26 H 1.08990 * 109.47564 * 239.99295 * 2 1 3 27 27 H 1.09000 * 109.46641 * 119.99116 * 2 1 3 28 28 H 1.09006 * 109.47553 * 59.99596 * 3 2 1 29 29 H 1.09002 * 109.47203 * 299.99272 * 3 2 1 30 30 H 0.96997 * 120.00675 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46827 * 65.39121 * 15 13 4 32 32 H 1.08998 * 109.47150 * 305.39443 * 15 13 4 33 33 H 1.08008 * 120.46888 * 0.24675 * 18 17 16 34 34 H 1.08001 * 119.57103 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.57479 * 180.02562 * 21 20 19 36 36 H 1.07993 * 120.46962 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4427 1.1881 6 1 5.1107 0.8858 1.2806 7 6 3.6998 2.1596 2.2728 8 7 4.0997 1.8656 3.4896 9 14 2.4722 3.5413 2.0014 10 1 1.0933 3.0216 2.1861 11 1 2.7266 4.6288 2.9801 12 1 2.6208 4.0716 0.6224 13 6 4.1793 1.4423 -1.1664 14 8 3.5772 1.3445 -2.2147 15 6 5.6814 1.5637 -1.1686 16 16 6.2751 1.6928 -2.8778 17 6 8.0271 1.6840 -2.6906 18 6 8.6121 1.7107 -1.4240 19 6 9.9868 1.7088 -1.3211 20 7 10.7465 1.6818 -2.4004 21 6 10.2317 1.6560 -3.6158 22 6 8.8662 1.6569 -3.8054 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3632 0.5137 -0.8901 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 3.7578 2.3662 4.2468 31 1 6.1178 0.6826 -0.6980 32 1 5.9748 2.4548 -0.6137 33 1 7.9965 1.7332 -0.5368 34 1 10.4483 1.7298 -0.3448 35 1 10.8888 1.6339 -4.4726 36 1 8.4517 1.6352 -4.8024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299111053.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:08 Heat of formation + Delta-G solvation = 5.686008 kcal Electronic energy + Delta-G solvation = -19175.787523 eV Core-core repulsion = 16172.598132 eV Total energy + Delta-G solvation = -3003.189391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80256 -39.05237 -35.52166 -33.18234 -32.47272 -31.86839 -31.31335 -29.40804 -25.88119 -24.80879 -23.67912 -23.29598 -21.34543 -19.40243 -18.16585 -17.04244 -16.51077 -16.13789 -15.81544 -15.55823 -14.92720 -14.71615 -14.22522 -14.03768 -13.90131 -13.59354 -13.18229 -12.99957 -12.71968 -12.41262 -12.12018 -11.78289 -11.75551 -11.50030 -11.06346 -10.96987 -10.60916 -10.48013 -10.26582 -10.08855 -9.87481 -9.39978 -9.33503 -9.18323 -8.87253 -8.04157 -7.38296 -6.68130 -4.29871 1.14364 1.16554 1.55979 2.58679 2.90944 3.08698 3.15055 3.44158 3.80991 3.94611 4.17763 4.47601 4.73441 4.81631 5.04890 5.20579 5.44451 5.49611 5.50029 5.56269 5.59885 5.77184 5.80395 5.83633 5.89599 5.95676 6.06207 6.21573 6.27686 6.35820 6.66515 6.66857 6.80158 7.15000 7.82469 7.99770 8.01156 8.70545 9.08288 9.42256 10.41615 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.004880 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.642844 B = 5736.132305 C = 6572.655921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.105 3.895 4 N -0.452 5.452 5 C -0.354 4.354 6 H 0.105 0.895 7 C 0.071 3.929 8 N -0.852 5.852 9 Si 0.879 3.121 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.261 1.261 13 C 0.491 3.509 14 O -0.582 6.582 15 C -0.118 4.118 16 S -0.032 6.032 17 C -0.054 4.054 18 C -0.189 4.189 19 C 0.117 3.883 20 N -0.501 5.501 21 C 0.110 3.890 22 C -0.161 4.161 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.278 0.722 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -0.105 -7.112 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.018 4.018 4 N -0.172 5.172 5 C -0.481 4.481 6 H 0.123 0.877 7 C -0.138 4.138 8 N -0.486 5.486 9 Si 0.707 3.293 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.185 1.185 13 C 0.278 3.722 14 O -0.468 6.468 15 C -0.268 4.268 16 S 0.213 5.787 17 C -0.175 4.175 18 C -0.216 4.216 19 C -0.041 4.041 20 N -0.212 5.212 21 C -0.047 4.047 22 C -0.188 4.188 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.869 -0.047 -8.243 9.106 hybrid contribution -0.730 0.620 1.477 1.761 sum 3.139 0.573 -6.766 7.480 Atomic orbital electron populations 1.21710 0.96239 1.01222 1.01400 1.21756 0.94907 0.97638 1.02706 1.21706 0.81909 0.97082 1.01113 1.43639 1.04161 1.64128 1.05303 1.19087 1.10361 1.31934 0.86695 0.87750 1.25336 0.97058 0.96715 0.94668 1.69731 1.42676 1.37940 0.98230 0.86906 0.80910 0.82257 0.79242 1.19826 1.21341 1.18543 1.19318 0.87291 0.81574 0.84030 1.90602 1.69471 1.55410 1.31268 1.23687 0.99299 1.07722 0.96130 1.86052 0.92345 1.89224 1.11101 1.22796 1.00132 0.98272 0.96340 1.22293 0.97362 1.04797 0.97149 1.22646 0.90135 0.93840 0.97478 1.67736 1.40726 1.13782 0.98964 1.22625 0.92517 0.94642 0.94963 1.21713 0.94234 1.04288 0.98528 0.92882 0.93010 0.92958 0.91808 0.91156 0.91764 0.91166 0.91155 0.87251 0.86617 0.84184 0.82590 0.82657 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.90 16 2 C -0.13 -2.47 6.26 -26.73 -0.17 -2.64 16 3 C 0.10 2.22 4.16 -4.04 -0.02 2.20 16 4 N -0.45 -10.29 2.21 -114.81 -0.25 -10.54 16 5 C -0.35 -8.54 9.02 -14.93 -0.13 -8.67 16 6 H 0.11 2.60 7.37 -52.49 -0.39 2.21 16 7 C 0.07 1.76 5.35 -17.47 -0.09 1.67 16 8 N -0.85 -22.06 13.96 55.50 0.77 -21.29 16 9 Si 0.88 19.43 24.83 -169.99 -4.22 15.20 16 10 H -0.27 -5.76 6.71 56.52 0.38 -5.39 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.49 10.81 7.63 -10.98 -0.08 10.73 16 14 O -0.58 -13.89 15.51 5.55 0.09 -13.80 16 15 C -0.12 -2.16 3.58 36.01 0.13 -2.04 16 16 S -0.03 -0.54 21.10 -107.50 -2.27 -2.80 16 17 C -0.05 -0.79 6.16 -38.60 -0.24 -1.03 16 18 C -0.19 -2.67 9.41 -39.23 -0.37 -3.04 16 19 C 0.12 1.54 11.17 -17.61 -0.20 1.35 16 20 N -0.50 -6.90 10.36 -13.36 -0.14 -7.04 16 21 C 0.11 1.33 11.17 -17.61 -0.20 1.14 16 22 C -0.16 -2.06 9.90 -39.23 -0.39 -2.45 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.39 2.96 -51.93 -0.15 1.24 16 29 H 0.07 1.48 7.50 -51.93 -0.39 1.09 16 30 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.11 1.90 7.44 -51.92 -0.39 1.52 16 32 H 0.12 2.06 7.69 -51.93 -0.40 1.66 16 33 H 0.14 1.92 6.13 -52.48 -0.32 1.60 16 34 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -28.05 314.90 -7.24 -35.29 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.58 Total: 4.92 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.39 Total: -4.68 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.38 Total: -38.87 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.22 Total: 15.20 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.27 Total: -2.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.05 -7.24 -35.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299111053.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.976 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds