Wall clock time and date at job start Tue Mar 31 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 N 1.46504 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.37093 * 120.00271 * 269.99782 * 4 3 2 6 6 H 1.07994 * 120.00291 * 143.45131 * 5 4 3 7 7 C 1.38950 * 120.00033 * 323.44886 * 5 4 3 8 8 N 1.31408 * 120.00530 * 159.84256 * 7 5 4 9 9 Si 1.86810 * 119.99933 * 339.84756 * 7 5 4 10 10 H 1.48502 * 109.47050 * 95.44488 * 9 7 5 11 11 H 1.48497 * 109.47217 * 215.44602 * 9 7 5 12 12 H 1.48497 * 109.46984 * 335.44524 * 9 7 5 13 13 C 1.34779 * 119.99691 * 89.99912 * 4 3 2 14 14 O 1.21294 * 120.00213 * 354.66352 * 13 4 3 15 15 C 1.50701 * 119.99805 * 174.66537 * 13 4 3 16 16 S 1.81400 * 109.47101 * 185.38693 * 15 13 4 17 17 C 1.76201 * 102.99775 * 184.70230 * 16 15 13 18 18 C 1.39542 * 120.87557 * 354.29460 * 17 16 15 19 19 C 1.37864 * 119.06215 * 180.29424 * 18 17 16 20 20 N 1.32017 * 120.85069 * 359.97307 * 19 18 17 21 21 C 1.32018 * 121.92041 * 0.02562 * 20 19 18 22 22 C 1.37862 * 120.85194 * 0.02562 * 21 20 19 23 23 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47564 * 300.00705 * 1 2 3 25 25 H 1.09000 * 109.46641 * 60.00884 * 1 2 3 26 26 H 1.08990 * 109.47564 * 239.99295 * 2 1 3 27 27 H 1.09000 * 109.46641 * 119.99116 * 2 1 3 28 28 H 1.09006 * 109.47553 * 59.99596 * 3 2 1 29 29 H 1.09002 * 109.47203 * 299.99272 * 3 2 1 30 30 H 0.96997 * 120.00675 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46827 * 65.39121 * 15 13 4 32 32 H 1.08998 * 109.47150 * 305.39443 * 15 13 4 33 33 H 1.08008 * 120.46888 * 0.24675 * 18 17 16 34 34 H 1.08001 * 119.57103 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.57479 * 180.02562 * 21 20 19 36 36 H 1.07993 * 120.46962 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4427 1.1881 6 1 5.1107 0.8858 1.2806 7 6 3.6998 2.1596 2.2728 8 7 4.0997 1.8656 3.4896 9 14 2.4722 3.5413 2.0014 10 1 1.0933 3.0216 2.1861 11 1 2.7266 4.6288 2.9801 12 1 2.6208 4.0716 0.6224 13 6 4.1793 1.4423 -1.1664 14 8 3.5772 1.3445 -2.2147 15 6 5.6814 1.5637 -1.1686 16 16 6.2751 1.6928 -2.8778 17 6 8.0271 1.6840 -2.6906 18 6 8.6121 1.7107 -1.4240 19 6 9.9868 1.7088 -1.3211 20 7 10.7465 1.6818 -2.4004 21 6 10.2317 1.6560 -3.6158 22 6 8.8662 1.6569 -3.8054 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3632 0.5137 -0.8901 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 3.7578 2.3662 4.2468 31 1 6.1178 0.6826 -0.6980 32 1 5.9748 2.4548 -0.6137 33 1 7.9965 1.7332 -0.5368 34 1 10.4483 1.7298 -0.3448 35 1 10.8888 1.6339 -4.4726 36 1 8.4517 1.6352 -4.8024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299111053.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:07 Heat of formation + Delta-G solvation = -9.722057 kcal Electronic energy + Delta-G solvation = -19176.455667 eV Core-core repulsion = 16172.598132 eV Total energy + Delta-G solvation = -3003.857535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84154 -40.81458 -37.28646 -34.82454 -33.74739 -33.47203 -32.36577 -30.89214 -27.51884 -26.55455 -24.75295 -24.34671 -22.84307 -21.16607 -19.53346 -18.61553 -18.15380 -17.50970 -17.14803 -16.81383 -16.53882 -16.00211 -15.75843 -15.66448 -15.03426 -14.78002 -14.66680 -14.54769 -14.13340 -13.96065 -13.69202 -13.38442 -13.15902 -12.78299 -12.60633 -12.53619 -12.22299 -11.93037 -11.67030 -11.57718 -11.43864 -11.11973 -10.68287 -10.42311 -10.18906 -9.87723 -8.68071 -8.58969 -6.22348 0.05158 0.15428 0.24332 1.14315 1.27337 1.28980 1.38594 1.68867 2.11583 2.50295 2.78823 2.86910 3.55957 3.81922 3.84456 3.98543 4.00145 4.01624 4.13606 4.18474 4.34192 4.37973 4.50961 4.53476 4.61582 4.79655 4.84444 4.90068 5.02907 5.08818 5.20165 5.23633 5.43634 5.67630 5.93423 6.14316 6.83282 6.98222 7.23958 7.60733 8.54039 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021310 B = 0.004880 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.642844 B = 5736.132305 C = 6572.655921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.097 3.903 4 N -0.462 5.462 5 C -0.349 4.349 6 H 0.090 0.910 7 C 0.039 3.961 8 N -0.886 5.886 9 Si 0.923 3.077 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.486 3.514 14 O -0.601 6.601 15 C -0.110 4.110 16 S -0.050 6.050 17 C -0.066 4.066 18 C -0.199 4.199 19 C 0.113 3.887 20 N -0.514 5.514 21 C 0.114 3.886 22 C -0.159 4.159 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.282 0.718 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.178 0.822 35 H 0.193 0.807 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 0.097 -8.031 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.025 4.025 4 N -0.183 5.183 5 C -0.477 4.477 6 H 0.107 0.893 7 C -0.167 4.167 8 N -0.522 5.522 9 Si 0.749 3.251 10 H -0.181 1.181 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.274 3.726 14 O -0.487 6.487 15 C -0.261 4.261 16 S 0.193 5.807 17 C -0.188 4.188 18 C -0.226 4.226 19 C -0.044 4.044 20 N -0.225 5.225 21 C -0.043 4.043 22 C -0.186 4.186 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.195 0.805 35 H 0.210 0.790 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.110 0.149 -9.156 10.037 hybrid contribution -0.677 0.522 1.670 1.876 sum 3.433 0.671 -7.486 8.263 Atomic orbital electron populations 1.21686 0.93268 1.02948 1.02099 1.21687 0.97493 0.95676 1.01527 1.21854 0.81182 0.98650 1.00857 1.43772 1.04932 1.64490 1.05072 1.18983 1.10028 1.31484 0.87164 0.89282 1.25792 0.98528 0.98061 0.94365 1.69783 1.44361 1.39128 0.98918 0.86204 0.80204 0.80149 0.78547 1.18145 1.21063 1.19341 1.19834 0.88757 0.80516 0.83488 1.90579 1.70380 1.55967 1.31768 1.23510 0.96892 1.08017 0.97634 1.85984 0.94775 1.90224 1.09681 1.22801 0.98601 0.99894 0.97475 1.22361 0.97960 1.05315 0.96932 1.22995 0.89712 0.93162 0.98518 1.67820 1.41079 1.13974 0.99655 1.23222 0.92675 0.92915 0.95519 1.22012 0.94430 1.03284 0.98831 0.90713 0.92579 0.91969 0.92725 0.92503 0.92036 0.91186 0.90758 0.86700 0.86421 0.84484 0.80456 0.79040 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16 2 C -0.13 -4.63 6.26 30.59 0.19 -4.44 16 3 C 0.10 4.07 4.16 86.38 0.36 4.43 16 4 N -0.46 -21.13 2.21 -635.52 -1.40 -22.53 16 5 C -0.35 -17.05 9.02 84.04 0.76 -16.29 16 6 H 0.09 4.54 7.37 -2.91 -0.02 4.52 16 7 C 0.04 1.91 5.35 84.93 0.45 2.36 16 8 N -0.89 -46.18 13.96 21.66 0.30 -45.87 16 9 Si 0.92 39.49 24.83 68.60 1.70 41.19 16 10 H -0.26 -10.22 6.71 99.48 0.67 -9.55 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 C 0.49 21.56 7.63 87.66 0.67 22.22 16 14 O -0.60 -28.71 15.51 -3.07 -0.05 -28.76 16 15 C -0.11 -4.09 3.58 71.24 0.25 -3.83 16 16 S -0.05 -1.68 21.10 -56.49 -1.19 -2.87 16 17 C -0.07 -1.89 6.16 22.90 0.14 -1.75 16 18 C -0.20 -5.49 9.41 22.50 0.21 -5.27 16 19 C 0.11 2.82 11.17 84.58 0.94 3.77 16 20 N -0.51 -13.01 10.36 -196.18 -2.03 -15.04 16 21 C 0.11 2.44 11.17 84.58 0.94 3.39 16 22 C -0.16 -3.74 9.90 22.50 0.22 -3.52 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.60 2.96 -2.38 -0.01 2.59 16 29 H 0.07 2.91 7.50 -2.39 -0.02 2.89 16 30 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 31 H 0.11 4.08 7.44 -2.39 -0.02 4.06 16 32 H 0.12 4.27 7.69 -2.39 -0.02 4.25 16 33 H 0.14 3.78 6.13 -2.91 -0.02 3.76 16 34 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -59.01 314.90 4.24 -54.77 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.04 Total: 21.41 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.87 Total: -2.28 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.13 Total: -83.45 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.70 Total: 41.19 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -1.19 Total: -2.87 kcal Total: -59.01 4.24 -54.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299111053.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.044 kcal (2) G-P(sol) polarization free energy of solvation -59.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds