Wall clock time and date at job start Tue Mar 31 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46743 * 2 1 4 4 N 1.46493 * 109.46753 * 179.97438 * 3 2 1 5 5 C 1.36946 * 120.00342 * 264.30212 * 4 3 2 6 6 H 1.07999 * 119.99619 * 34.34404 * 5 4 3 7 7 C 1.38984 * 120.00440 * 214.34028 * 5 4 3 8 8 N 1.31407 * 119.99781 * 26.15485 * 7 5 4 9 9 Si 1.86795 * 120.00008 * 206.15366 * 7 5 4 10 10 H 1.48500 * 109.47117 * 94.99842 * 9 7 5 11 11 H 1.48498 * 109.46938 * 214.99898 * 9 7 5 12 12 H 1.48497 * 109.47247 * 335.00176 * 9 7 5 13 13 C 1.34786 * 119.99973 * 84.30570 * 4 3 2 14 14 O 1.21656 * 120.00121 * 174.77203 * 13 4 3 15 15 C 1.47172 * 119.99472 * 355.05304 * 13 4 3 16 16 C 1.35302 * 123.14668 * 184.18918 * 15 13 4 17 17 S 1.70943 * 108.81773 * 179.97438 * 16 15 13 18 18 C 1.70762 * 91.13875 * 359.97438 * 17 16 15 19 19 C 1.50697 * 124.71186 * 180.02562 * 18 17 16 20 20 C 1.52997 * 117.49966 * 13.58848 * 19 18 17 21 21 C 1.52998 * 60.00153 * 252.51129 * 20 19 18 22 22 N 1.28651 * 110.57632 * 359.72912 * 18 17 16 23 23 H 1.09009 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47620 * 300.00032 * 1 2 3 25 25 H 1.09001 * 109.47312 * 60.00265 * 1 2 3 26 26 H 1.08992 * 109.46856 * 240.00055 * 2 1 3 27 27 H 1.08996 * 109.46469 * 119.99502 * 2 1 3 28 28 H 1.09001 * 109.47089 * 59.99643 * 3 2 1 29 29 H 1.09001 * 109.47000 * 299.99926 * 3 2 1 30 30 H 0.97003 * 119.99919 * 184.98622 * 8 7 5 31 31 H 1.08000 * 125.59162 * 0.02562 * 16 15 13 32 32 H 1.09006 * 115.55205 * 159.29374 * 19 18 17 33 33 H 1.09004 * 117.49742 * 359.97438 * 20 19 18 34 34 H 1.08996 * 117.50482 * 145.01944 * 20 19 18 35 35 H 1.09001 * 117.49631 * 252.51109 * 21 20 19 36 36 H 1.08997 * 117.52399 * 107.47978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.5605 1.1810 6 1 3.7900 1.1203 2.0828 7 6 5.3974 2.2465 1.2184 8 7 5.6467 3.1866 0.3347 9 14 6.6666 1.8322 2.5247 10 1 7.6431 0.8579 1.9748 11 1 7.3786 3.0697 2.9332 12 1 5.9872 1.2395 3.7047 13 6 4.1793 1.3266 -1.1606 14 8 5.3921 1.4219 -1.1718 15 6 3.4480 1.0908 -2.4158 16 6 4.0633 0.8828 -3.6027 17 16 2.8732 0.6502 -4.8075 18 6 1.6242 0.8429 -3.6591 19 6 0.1519 0.7678 -3.9717 20 6 -0.2534 0.1922 -5.3302 21 6 -0.3863 1.6932 -5.0649 22 7 2.1147 1.0550 -2.4889 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.5167 3.6152 0.3150 31 1 5.1313 0.8657 -3.7625 32 1 -0.4991 0.5603 -3.1224 33 1 0.5449 -0.1317 -5.9979 34 1 -1.1711 -0.3942 -5.3748 35 1 -1.3915 2.0942 -4.9349 36 1 0.3245 2.3566 -5.5576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331773309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:41 Heat of formation + Delta-G solvation = 60.798408 kcal Electronic energy + Delta-G solvation = -20216.039082 eV Core-core repulsion = 17215.239545 eV Total energy + Delta-G solvation = -3000.799538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.83108 -37.83283 -36.77135 -34.83513 -32.61098 -31.04435 -29.76444 -26.30642 -25.30006 -24.48884 -22.59604 -22.38608 -20.96432 -20.15610 -18.95616 -17.96139 -16.20102 -15.96797 -15.56281 -14.79250 -14.53940 -14.22478 -14.03322 -13.59828 -13.37126 -13.12907 -12.61283 -12.29182 -12.08661 -11.81139 -11.60128 -11.50744 -11.28191 -10.99875 -10.86409 -10.74232 -10.65814 -10.55937 -10.47549 -10.12528 -10.00535 -9.07624 -8.93451 -8.79847 -8.20432 -8.08121 -7.03337 -6.07495 -3.75094 1.06141 1.68584 2.12637 2.80914 3.37128 3.43875 3.46318 3.76526 4.08830 4.37568 4.66629 4.78706 4.87211 5.04039 5.15622 5.37890 5.42795 5.47436 5.69424 5.70436 5.73338 5.87195 5.88823 5.91945 6.01532 6.19582 6.32147 6.45427 6.55942 6.66513 6.70025 7.00865 7.23427 7.61036 8.04169 8.25099 9.03253 9.22940 9.68565 10.35726 10.95262 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.005946 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.191622 B = 4708.182315 C = 5509.225026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.105 3.895 4 N -0.424 5.424 5 C -0.339 4.339 6 H 0.086 0.914 7 C 0.065 3.935 8 N -0.796 5.796 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.503 3.497 14 O -0.530 6.530 15 C 0.055 3.945 16 C -0.253 4.253 17 S 0.142 5.858 18 C 0.044 3.956 19 C -0.076 4.076 20 C -0.172 4.172 21 C -0.164 4.164 22 N -0.426 5.426 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.265 0.735 31 H 0.179 0.821 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 -4.809 -10.669 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.019 4.019 4 N -0.141 5.141 5 C -0.466 4.466 6 H 0.104 0.896 7 C -0.148 4.148 8 N -0.430 5.430 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.197 1.197 13 C 0.289 3.711 14 O -0.408 6.408 15 C -0.078 4.078 16 C -0.394 4.394 17 S 0.397 5.603 18 C -0.234 4.234 19 C -0.098 4.098 20 C -0.210 4.210 21 C -0.203 4.203 22 N -0.142 5.142 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.197 0.803 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.847 -4.677 -11.239 16.987 hybrid contribution 1.207 0.009 1.405 1.853 sum -10.640 -4.668 -9.834 15.222 Atomic orbital electron populations 1.21636 0.96684 1.00248 1.01140 1.21760 0.94564 0.98809 1.01056 1.21856 0.82481 0.95643 1.01910 1.43218 1.03775 1.61499 1.05649 1.19220 1.05698 1.34254 0.87442 0.89621 1.25048 0.99239 0.93152 0.97317 1.70027 1.21793 1.17284 1.33872 0.86310 0.81721 0.77991 0.80888 1.20472 1.21394 1.19747 1.16675 0.86371 0.86573 0.81504 1.90649 1.12844 1.52602 1.84739 1.21340 0.87197 1.02318 0.96932 1.26279 1.05684 1.11709 0.95769 1.82260 0.97037 1.66551 1.14462 1.26285 0.99236 1.05542 0.92363 1.20349 0.88923 1.06276 0.94214 1.23124 1.03653 0.96709 0.97499 1.23129 1.02900 0.93099 1.01162 1.67382 1.11210 1.14185 1.21392 0.93891 0.93417 0.92883 0.92314 0.93154 0.92579 0.89205 0.92507 0.80344 0.85103 0.88402 0.87609 0.87741 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.11 2.31 4.95 -4.04 -0.02 2.29 16 4 N -0.42 -11.37 2.58 -116.12 -0.30 -11.66 16 5 C -0.34 -9.67 9.32 -14.99 -0.14 -9.81 16 6 H 0.09 2.33 7.96 -52.49 -0.42 1.91 16 7 C 0.06 1.89 4.17 -17.46 -0.07 1.81 16 8 N -0.80 -24.41 11.21 55.50 0.62 -23.79 16 9 Si 0.90 22.28 29.63 -169.99 -5.04 17.25 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 13 C 0.50 13.87 7.08 -12.63 -0.09 13.78 16 14 O -0.53 -16.42 13.52 5.23 0.07 -16.35 16 15 C 0.06 1.25 6.21 -84.53 -0.52 0.73 16 16 C -0.25 -4.93 10.62 29.69 0.32 -4.62 16 17 S 0.14 2.03 21.72 -107.50 -2.33 -0.31 16 18 C 0.04 0.69 6.98 -13.61 -0.09 0.59 16 19 C -0.08 -0.87 6.33 -91.77 -0.58 -1.46 16 20 C -0.17 -1.47 10.00 -26.73 -0.27 -1.74 16 21 C -0.16 -1.50 10.23 -26.73 -0.27 -1.77 16 22 N -0.43 -8.20 5.10 -8.51 -0.04 -8.24 16 23 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.73 7.53 -51.93 -0.39 0.34 16 26 H 0.06 1.17 6.50 -51.93 -0.34 0.84 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.21 7.99 -51.93 -0.42 0.79 16 29 H 0.09 1.95 5.50 -51.93 -0.29 1.67 16 30 H 0.26 7.75 8.32 -40.82 -0.34 7.41 16 31 H 0.18 3.47 8.03 -52.49 -0.42 3.04 16 32 H 0.13 1.45 7.53 -51.93 -0.39 1.06 16 33 H 0.10 0.83 7.27 -51.93 -0.38 0.46 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -33.75 311.97 -8.56 -42.31 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.71 Total: 0.43 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.53 Total: -4.33 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.28 Total: -43.70 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.07 Total: -16.35 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.04 Total: 17.25 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.33 Total: -0.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.75 -8.56 -42.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331773309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.110 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds