Wall clock time and date at job start Tue Mar 31 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46743 * 2 1 4 4 N 1.46493 * 109.46753 * 179.97438 * 3 2 1 5 5 C 1.36946 * 120.00342 * 264.30212 * 4 3 2 6 6 H 1.07999 * 119.99619 * 34.34404 * 5 4 3 7 7 C 1.38984 * 120.00440 * 214.34028 * 5 4 3 8 8 N 1.31407 * 119.99781 * 26.15485 * 7 5 4 9 9 Si 1.86795 * 120.00008 * 206.15366 * 7 5 4 10 10 H 1.48500 * 109.47117 * 94.99842 * 9 7 5 11 11 H 1.48498 * 109.46938 * 214.99898 * 9 7 5 12 12 H 1.48497 * 109.47247 * 335.00176 * 9 7 5 13 13 C 1.34786 * 119.99973 * 84.30570 * 4 3 2 14 14 O 1.21656 * 120.00121 * 174.77203 * 13 4 3 15 15 C 1.47172 * 119.99472 * 355.05304 * 13 4 3 16 16 C 1.35302 * 123.14668 * 184.18918 * 15 13 4 17 17 S 1.70943 * 108.81773 * 179.97438 * 16 15 13 18 18 C 1.70762 * 91.13875 * 359.97438 * 17 16 15 19 19 C 1.50697 * 124.71186 * 180.02562 * 18 17 16 20 20 C 1.52997 * 117.49966 * 13.58848 * 19 18 17 21 21 C 1.52998 * 60.00153 * 252.51129 * 20 19 18 22 22 N 1.28651 * 110.57632 * 359.72912 * 18 17 16 23 23 H 1.09009 * 109.46977 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47620 * 300.00032 * 1 2 3 25 25 H 1.09001 * 109.47312 * 60.00265 * 1 2 3 26 26 H 1.08992 * 109.46856 * 240.00055 * 2 1 3 27 27 H 1.08996 * 109.46469 * 119.99502 * 2 1 3 28 28 H 1.09001 * 109.47089 * 59.99643 * 3 2 1 29 29 H 1.09001 * 109.47000 * 299.99926 * 3 2 1 30 30 H 0.97003 * 119.99919 * 184.98622 * 8 7 5 31 31 H 1.08000 * 125.59162 * 0.02562 * 16 15 13 32 32 H 1.09006 * 115.55205 * 159.29374 * 19 18 17 33 33 H 1.09004 * 117.49742 * 359.97438 * 20 19 18 34 34 H 1.08996 * 117.50482 * 145.01944 * 20 19 18 35 35 H 1.09001 * 117.49631 * 252.51109 * 21 20 19 36 36 H 1.08997 * 117.52399 * 107.47978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.5605 1.1810 6 1 3.7900 1.1203 2.0828 7 6 5.3974 2.2465 1.2184 8 7 5.6467 3.1866 0.3347 9 14 6.6666 1.8322 2.5247 10 1 7.6431 0.8579 1.9748 11 1 7.3786 3.0697 2.9332 12 1 5.9872 1.2395 3.7047 13 6 4.1793 1.3266 -1.1606 14 8 5.3921 1.4219 -1.1718 15 6 3.4480 1.0908 -2.4158 16 6 4.0633 0.8828 -3.6027 17 16 2.8732 0.6502 -4.8075 18 6 1.6242 0.8429 -3.6591 19 6 0.1519 0.7678 -3.9717 20 6 -0.2534 0.1922 -5.3302 21 6 -0.3863 1.6932 -5.0649 22 7 2.1147 1.0550 -2.4889 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 6.5167 3.6152 0.3150 31 1 5.1313 0.8657 -3.7625 32 1 -0.4991 0.5603 -3.1224 33 1 0.5449 -0.1317 -5.9979 34 1 -1.1711 -0.3942 -5.3748 35 1 -1.3915 2.0942 -4.9349 36 1 0.3245 2.3566 -5.5576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331773309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:41 Heat of formation + Delta-G solvation = 39.931683 kcal Electronic energy + Delta-G solvation = -20216.943931 eV Core-core repulsion = 17215.239545 eV Total energy + Delta-G solvation = -3001.704387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41336 -39.44545 -37.85367 -36.73475 -34.55388 -32.88112 -31.24795 -28.10016 -26.86737 -26.08865 -23.97261 -23.23587 -22.42119 -21.47456 -20.75257 -19.52680 -17.98357 -17.41932 -17.12554 -16.41768 -16.13564 -15.84262 -15.43873 -15.21385 -14.81649 -14.76576 -14.22878 -13.80804 -13.57070 -13.24696 -13.13357 -12.94874 -12.69491 -12.57033 -12.46013 -12.31101 -12.13025 -12.00065 -11.75002 -11.51333 -11.39442 -10.95846 -10.40096 -10.30566 -10.16301 -9.57974 -9.15888 -8.23438 -5.96662 -0.33897 0.38823 0.72006 1.26697 1.37238 1.45952 1.50688 2.33777 2.80179 2.86912 3.09779 3.18687 3.32173 3.86477 3.99352 4.11476 4.19643 4.27578 4.34454 4.42950 4.56628 4.69675 4.82062 4.82436 4.88068 5.03049 5.10127 5.14457 5.20342 5.27437 5.32566 5.41378 5.46893 5.65196 6.09800 6.63987 6.91555 7.17147 7.60881 8.28906 8.79943 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.005946 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.191622 B = 4708.182315 C = 5509.225026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C 0.106 3.894 4 N -0.440 5.440 5 C -0.366 4.366 6 H 0.090 0.910 7 C 0.016 3.984 8 N -0.841 5.841 9 Si 0.970 3.030 10 H -0.291 1.291 11 H -0.279 1.279 12 H -0.251 1.251 13 C 0.492 3.508 14 O -0.581 6.581 15 C 0.023 3.977 16 C -0.276 4.276 17 S 0.256 5.744 18 C 0.044 3.956 19 C -0.106 4.106 20 C -0.150 4.150 21 C -0.155 4.155 22 N -0.450 5.450 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.260 0.740 31 H 0.169 0.831 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.137 -5.982 -12.560 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.149 4.149 3 C -0.017 4.017 4 N -0.158 5.158 5 C -0.493 4.493 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.477 5.477 9 Si 0.794 3.206 10 H -0.218 1.218 11 H -0.205 1.205 12 H -0.174 1.174 13 C 0.279 3.721 14 O -0.463 6.463 15 C -0.111 4.111 16 C -0.418 4.418 17 S 0.513 5.487 18 C -0.234 4.234 19 C -0.128 4.128 20 C -0.188 4.188 21 C -0.193 4.193 22 N -0.166 5.166 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.186 0.814 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.761 -5.859 -13.130 20.606 hybrid contribution 1.953 0.322 1.734 2.631 sum -12.809 -5.538 -11.396 18.017 Atomic orbital electron populations 1.21558 0.92955 1.01976 1.02134 1.21604 0.97627 0.96038 0.99633 1.22014 0.80030 0.97890 1.01739 1.43502 1.05654 1.61397 1.05247 1.19546 1.06748 1.34545 0.88489 0.89218 1.25983 1.01130 0.92718 0.99378 1.70127 1.21841 1.18984 1.36708 0.85299 0.78790 0.77639 0.78850 1.21804 1.20471 1.17408 1.17416 0.86404 0.85007 0.83269 1.90581 1.15088 1.54504 1.86102 1.20737 0.88994 1.05704 0.95665 1.26532 1.07052 1.10785 0.97456 1.81764 0.93005 1.63631 1.10274 1.27090 1.01695 1.02697 0.91887 1.20559 0.86222 1.09883 0.96125 1.23296 1.04557 0.96603 0.94314 1.23281 1.03711 0.93568 0.98782 1.67271 1.09366 1.16356 1.23592 0.91749 0.92613 0.91710 0.93564 0.94684 0.93057 0.88865 0.93065 0.81370 0.84512 0.88116 0.84941 0.85565 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -4.16 5.61 30.60 0.17 -3.99 16 3 C 0.11 4.79 4.95 86.38 0.43 5.22 16 4 N -0.44 -24.77 2.58 -639.51 -1.65 -26.41 16 5 C -0.37 -21.80 9.32 84.07 0.78 -21.02 16 6 H 0.09 5.07 7.96 -2.91 -0.02 5.04 16 7 C 0.02 0.98 4.17 84.94 0.35 1.33 16 8 N -0.84 -54.39 11.21 21.67 0.24 -54.15 16 9 Si 0.97 47.60 29.63 68.60 2.03 49.64 16 10 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.25 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.49 28.58 7.08 86.59 0.61 29.19 16 14 O -0.58 -38.26 13.52 -4.21 -0.06 -38.32 16 15 C 0.02 1.07 6.21 40.55 0.25 1.32 16 16 C -0.28 -10.87 10.62 67.14 0.71 -10.16 16 17 S 0.26 6.65 21.72 -56.49 -1.23 5.42 16 18 C 0.04 1.28 6.98 88.57 0.62 1.89 16 19 C -0.11 -2.04 6.33 -11.54 -0.07 -2.12 16 20 C -0.15 -1.80 10.00 30.59 0.31 -1.49 16 21 C -0.15 -2.12 10.23 30.59 0.31 -1.81 16 22 N -0.45 -17.16 5.10 -180.85 -0.92 -18.08 16 23 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.61 7.53 -2.39 -0.02 1.59 16 26 H 0.05 1.85 6.50 -2.39 -0.02 1.84 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 2.28 7.99 -2.39 -0.02 2.26 16 29 H 0.09 4.14 5.50 -2.39 -0.01 4.13 16 30 H 0.26 16.11 8.32 -92.71 -0.77 15.34 16 31 H 0.17 6.82 8.03 -2.91 -0.02 6.79 16 32 H 0.14 2.52 7.53 -2.38 -0.02 2.50 16 33 H 0.10 1.17 7.27 -2.39 -0.02 1.15 16 34 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -79.56 311.97 4.70 -74.86 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.09 Total: 11.43 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.19 Total: -4.38 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -2.33 Total: -98.64 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.06 Total: -38.32 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.64 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.23 Total: 5.42 kcal Total: -79.56 4.70 -74.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331773309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.787 kcal (2) G-P(sol) polarization free energy of solvation -79.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds