Wall clock time and date at job start Tue Mar 31 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29518 * 121.53415 * 2 1 4 4 S 1.69477 * 107.84844 * 180.02562 * 3 2 1 5 5 C 1.72016 * 96.02328 * 359.97438 * 4 3 2 6 6 C 1.37893 * 105.36743 * 0.02562 * 5 4 3 7 7 C 1.47347 * 123.08597 * 179.73085 * 6 5 4 8 8 O 1.21612 * 119.99864 * 233.65346 * 7 6 5 9 9 N 1.34775 * 119.99720 * 53.65772 * 7 6 5 10 10 C 1.46924 * 120.63550 * 5.52533 * 9 7 6 11 11 C 1.53622 * 108.54587 * 126.36602 * 10 9 7 12 12 C 1.53044 * 109.23760 * 54.86133 * 11 10 9 13 13 C 1.50701 * 109.44628 * 178.49353 * 12 11 10 14 14 H 1.08004 * 119.99237 * 120.05902 * 13 12 11 15 15 C 1.37875 * 120.00397 * 300.06148 * 13 12 11 16 16 N 1.31516 * 119.99939 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00058 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47150 * 90.00021 * 17 15 13 19 19 H 1.48499 * 109.46854 * 209.99974 * 17 15 13 20 20 H 1.48503 * 109.47280 * 329.99709 * 17 15 13 21 21 C 1.53036 * 109.53756 * 298.50848 * 12 11 10 22 22 C 1.46925 * 120.62935 * 185.80445 * 9 7 6 23 23 H 1.08999 * 109.46996 * 269.98685 * 1 2 3 24 24 H 1.09002 * 109.46393 * 29.98084 * 1 2 3 25 25 H 1.08997 * 109.46867 * 149.97821 * 1 2 3 26 26 H 1.08004 * 127.31411 * 179.97438 * 5 4 3 27 27 H 1.08996 * 109.59114 * 246.20795 * 10 9 7 28 28 H 1.09004 * 109.58559 * 6.62781 * 10 9 7 29 29 H 1.09001 * 109.63740 * 294.87090 * 11 10 9 30 30 H 1.09002 * 109.42896 * 174.72343 * 11 10 9 31 31 H 1.08999 * 109.46053 * 58.53097 * 12 11 10 32 32 H 0.96996 * 119.99722 * 180.02562 * 16 15 13 33 33 H 1.09007 * 109.49781 * 301.41675 * 21 12 11 34 34 H 1.09003 * 109.52571 * 181.33484 * 21 12 11 35 35 H 1.09000 * 109.58583 * 353.37385 * 22 9 7 36 36 H 1.09006 * 109.58929 * 113.65231 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1845 1.1039 0.0000 4 16 3.8311 0.7029 -0.0007 5 6 3.6017 -1.0019 -0.0003 6 6 2.2353 -1.1867 -0.0002 7 6 1.6037 -2.5180 -0.0056 8 8 0.7785 -2.7960 -0.8546 9 7 1.9404 -3.4274 0.9304 10 6 2.8432 -3.0683 2.0325 11 6 2.1587 -3.4249 3.3608 12 6 1.7511 -4.8999 3.3379 13 6 1.1123 -5.2643 4.6532 14 1 0.0958 -5.6287 4.6772 15 6 1.8252 -5.1325 5.8260 16 7 3.0631 -4.6892 5.7967 17 14 1.0330 -5.5836 7.4564 18 1 1.2900 -7.0160 7.7521 19 1 1.6105 -4.7438 8.5364 20 1 -0.4313 -5.3495 7.3768 21 6 0.7525 -5.1374 2.2029 22 6 1.4165 -4.7984 0.8646 23 1 -0.3633 -0.0002 1.0277 24 1 -0.3632 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 4.3658 -1.7652 -0.0009 27 1 3.7754 -3.6251 1.9375 28 1 3.0497 -1.9984 2.0020 29 1 1.2725 -2.8046 3.4943 30 1 2.8521 -3.2518 4.1839 31 1 2.6346 -5.5184 3.1796 32 1 3.5647 -4.5968 6.6217 33 1 -0.1206 -4.5008 2.3473 34 1 0.4442 -6.1829 2.2016 35 1 0.6813 -4.8706 0.0632 36 1 2.2343 -5.4934 0.6738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335978689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:38 Heat of formation + Delta-G solvation = -3.777975 kcal Electronic energy + Delta-G solvation = -20014.527499 eV Core-core repulsion = 17010.927719 eV Total energy + Delta-G solvation = -3003.599780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38025 -38.35285 -36.74072 -33.66252 -32.15833 -30.81741 -30.08193 -29.59667 -26.43537 -24.48380 -22.85295 -22.46997 -20.88729 -19.46382 -18.87515 -17.54912 -16.90542 -16.20670 -15.69301 -14.95058 -14.66434 -14.57403 -14.36447 -13.56230 -13.29005 -13.16692 -12.79141 -12.72205 -12.45898 -12.35330 -12.15486 -11.72594 -11.44152 -11.33731 -10.98756 -10.81185 -10.68282 -10.45829 -10.16324 -9.81954 -9.76706 -9.50295 -9.23311 -8.99102 -8.69252 -8.43083 -8.10737 -6.08013 -4.14037 0.46165 1.32094 1.67210 2.00321 2.95231 3.25408 3.32794 3.36100 3.44199 4.37284 4.43448 4.76379 4.97561 5.21803 5.30282 5.35604 5.51460 5.56851 5.64065 5.72874 5.86519 5.98705 6.06066 6.09467 6.20493 6.36997 6.55450 6.58284 6.81242 6.96364 7.06467 7.21013 7.60297 7.77473 7.85526 7.97864 8.34785 8.37096 8.89369 9.51504 10.97643 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022865 B = 0.004857 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.286137 B = 5763.787024 C = 6225.913189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.160 3.840 3 N -0.469 5.469 4 S 0.274 5.726 5 C -0.172 4.172 6 C -0.195 4.195 7 C 0.582 3.418 8 O -0.546 6.546 9 N -0.589 5.589 10 C 0.100 3.900 11 C -0.122 4.122 12 C 0.048 3.952 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.112 3.888 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.191 0.809 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 7.386 -10.163 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.018 4.018 3 N -0.290 5.290 4 S 0.430 5.570 5 C -0.321 4.321 6 C -0.216 4.216 7 C 0.366 3.634 8 O -0.425 6.425 9 N -0.320 5.320 10 C -0.022 4.022 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.161 4.161 22 C -0.010 4.010 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.208 0.792 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.812 9.344 -10.464 14.308 hybrid contribution -0.925 -1.918 1.111 2.402 sum 1.887 7.426 -9.353 12.091 Atomic orbital electron populations 1.20771 0.85907 1.04987 1.04108 1.21349 0.99256 0.86779 0.94428 1.76412 1.00304 1.26115 1.26143 1.83944 1.10717 0.96040 1.66317 1.27322 0.99072 1.04189 1.01500 1.20394 0.92613 0.96281 1.12300 1.17385 0.81530 0.82890 0.81564 1.90736 1.33786 1.79248 1.38761 1.48166 1.47103 1.11470 1.25240 1.22244 0.92606 0.99472 0.87876 1.22096 1.00332 0.99471 0.94176 1.18645 0.93982 0.92244 0.92160 1.21196 0.99491 1.43150 0.91171 0.92653 1.24953 0.94836 0.95065 0.99068 1.69826 1.09331 1.46491 1.27490 0.86615 0.79614 0.78400 0.83513 1.20683 1.21249 1.19948 1.22009 0.99678 1.00507 0.93936 1.21769 0.98531 0.80719 0.99961 0.89628 0.90138 0.88388 0.79224 0.91795 0.91523 0.94180 0.87713 0.95427 0.92952 0.92799 0.91965 0.90074 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.96 36.01 0.36 -0.89 16 2 C 0.16 2.33 6.75 -83.19 -0.56 1.77 16 3 N -0.47 -6.70 11.97 32.50 0.39 -6.31 16 4 S 0.27 3.17 23.69 -107.50 -2.55 0.62 16 5 C -0.17 -2.09 9.31 30.61 0.28 -1.80 16 6 C -0.19 -2.89 4.56 -105.95 -0.48 -3.37 16 7 C 0.58 9.91 6.83 -12.56 -0.09 9.83 16 8 O -0.55 -10.45 14.90 5.27 0.08 -10.37 16 9 N -0.59 -10.11 2.97 -173.80 -0.52 -10.63 16 10 C 0.10 1.72 5.88 -3.49 -0.02 1.70 16 11 C -0.12 -2.62 5.17 -26.39 -0.14 -2.76 16 12 C 0.05 1.10 2.06 -91.73 -0.19 0.92 16 13 C -0.51 -13.30 8.56 -34.44 -0.29 -13.60 16 14 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -23.96 11.31 55.43 0.63 -23.34 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 22 C 0.11 1.93 6.44 -3.71 -0.02 1.91 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.10 1.38 6.21 -51.93 -0.32 1.06 16 26 H 0.19 1.86 8.05 -52.48 -0.42 1.44 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.04 5.38 -51.93 -0.28 0.77 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.38 7.00 -51.93 -0.36 1.01 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -28.63 305.67 -8.39 -37.02 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.62 Total: 0.22 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.39 Total: -7.32 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.50 Total: -40.28 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.55 Total: 0.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.63 -8.39 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.241 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds