Wall clock time and date at job start Tue Mar 31 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29518 * 121.53415 * 2 1 4 4 S 1.69477 * 107.84844 * 180.02562 * 3 2 1 5 5 C 1.72016 * 96.02328 * 359.97438 * 4 3 2 6 6 C 1.37893 * 105.36743 * 0.02562 * 5 4 3 7 7 C 1.47347 * 123.08597 * 179.73085 * 6 5 4 8 8 O 1.21612 * 119.99864 * 233.65346 * 7 6 5 9 9 N 1.34775 * 119.99720 * 53.65772 * 7 6 5 10 10 C 1.46924 * 120.63550 * 5.52533 * 9 7 6 11 11 C 1.53622 * 108.54587 * 126.36602 * 10 9 7 12 12 C 1.53044 * 109.23760 * 54.86133 * 11 10 9 13 13 C 1.50701 * 109.44628 * 178.49353 * 12 11 10 14 14 H 1.08004 * 119.99237 * 120.05902 * 13 12 11 15 15 C 1.37875 * 120.00397 * 300.06148 * 13 12 11 16 16 N 1.31516 * 119.99939 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00058 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47150 * 90.00021 * 17 15 13 19 19 H 1.48499 * 109.46854 * 209.99974 * 17 15 13 20 20 H 1.48503 * 109.47280 * 329.99709 * 17 15 13 21 21 C 1.53036 * 109.53756 * 298.50848 * 12 11 10 22 22 C 1.46925 * 120.62935 * 185.80445 * 9 7 6 23 23 H 1.08999 * 109.46996 * 269.98685 * 1 2 3 24 24 H 1.09002 * 109.46393 * 29.98084 * 1 2 3 25 25 H 1.08997 * 109.46867 * 149.97821 * 1 2 3 26 26 H 1.08004 * 127.31411 * 179.97438 * 5 4 3 27 27 H 1.08996 * 109.59114 * 246.20795 * 10 9 7 28 28 H 1.09004 * 109.58559 * 6.62781 * 10 9 7 29 29 H 1.09001 * 109.63740 * 294.87090 * 11 10 9 30 30 H 1.09002 * 109.42896 * 174.72343 * 11 10 9 31 31 H 1.08999 * 109.46053 * 58.53097 * 12 11 10 32 32 H 0.96996 * 119.99722 * 180.02562 * 16 15 13 33 33 H 1.09007 * 109.49781 * 301.41675 * 21 12 11 34 34 H 1.09003 * 109.52571 * 181.33484 * 21 12 11 35 35 H 1.09000 * 109.58583 * 353.37385 * 22 9 7 36 36 H 1.09006 * 109.58929 * 113.65231 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1845 1.1039 0.0000 4 16 3.8311 0.7029 -0.0007 5 6 3.6017 -1.0019 -0.0003 6 6 2.2353 -1.1867 -0.0002 7 6 1.6037 -2.5180 -0.0056 8 8 0.7785 -2.7960 -0.8546 9 7 1.9404 -3.4274 0.9304 10 6 2.8432 -3.0683 2.0325 11 6 2.1587 -3.4249 3.3608 12 6 1.7511 -4.8999 3.3379 13 6 1.1123 -5.2643 4.6532 14 1 0.0958 -5.6287 4.6772 15 6 1.8252 -5.1325 5.8260 16 7 3.0631 -4.6892 5.7967 17 14 1.0330 -5.5836 7.4564 18 1 1.2900 -7.0160 7.7521 19 1 1.6105 -4.7438 8.5364 20 1 -0.4313 -5.3495 7.3768 21 6 0.7525 -5.1374 2.2029 22 6 1.4165 -4.7984 0.8646 23 1 -0.3633 -0.0002 1.0277 24 1 -0.3632 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 4.3658 -1.7652 -0.0009 27 1 3.7754 -3.6251 1.9375 28 1 3.0497 -1.9984 2.0020 29 1 1.2725 -2.8046 3.4943 30 1 2.8521 -3.2518 4.1839 31 1 2.6346 -5.5184 3.1796 32 1 3.5647 -4.5968 6.6217 33 1 -0.1206 -4.5008 2.3473 34 1 0.4442 -6.1829 2.2016 35 1 0.6813 -4.8706 0.0632 36 1 2.2343 -5.4934 0.6738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335978689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:38 Heat of formation + Delta-G solvation = -19.930900 kcal Electronic energy + Delta-G solvation = -20015.227942 eV Core-core repulsion = 17010.927719 eV Total energy + Delta-G solvation = -3004.300223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63313 -39.57492 -38.23615 -35.38472 -33.57194 -32.31731 -31.54638 -30.65435 -28.13648 -25.84144 -24.29609 -24.00851 -22.25146 -20.83815 -20.09308 -18.81767 -18.45881 -17.87907 -16.97289 -16.48861 -16.18760 -15.74679 -15.55733 -14.89423 -14.83647 -14.67466 -14.29701 -14.22095 -13.80203 -13.46420 -13.27988 -13.22426 -13.05007 -12.81632 -12.45216 -12.44176 -12.14765 -11.99661 -11.81418 -11.47848 -11.03235 -10.99498 -10.94443 -10.58425 -10.38040 -9.70823 -9.55357 -8.07623 -6.19907 -0.54544 0.35271 0.66763 0.88592 1.41520 1.44266 1.52435 1.67004 2.14059 2.44726 3.19593 3.46080 3.52657 3.97988 4.09223 4.27246 4.30468 4.36956 4.39923 4.47221 4.57141 4.59551 4.61635 4.69447 4.88049 4.97484 5.08450 5.20527 5.23713 5.42792 5.49631 5.57449 5.65338 6.00031 6.12690 6.38935 6.41935 6.89544 7.04105 7.47850 8.95835 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022865 B = 0.004857 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.286137 B = 5763.787024 C = 6225.913189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.150 3.850 3 N -0.497 5.497 4 S 0.333 5.667 5 C -0.159 4.159 6 C -0.226 4.226 7 C 0.587 3.413 8 O -0.570 6.570 9 N -0.592 5.592 10 C 0.114 3.886 11 C -0.114 4.114 12 C 0.045 3.955 13 C -0.534 4.534 14 H 0.047 0.953 15 C 0.019 3.981 16 N -0.911 5.911 17 Si 0.945 3.055 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.114 4.114 22 C 0.118 3.882 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.217 0.783 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.008 0.992 32 H 0.261 0.739 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 7.994 -10.647 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.027 4.027 3 N -0.319 5.319 4 S 0.488 5.512 5 C -0.309 4.309 6 C -0.247 4.247 7 C 0.373 3.627 8 O -0.451 6.451 9 N -0.322 5.322 10 C -0.008 4.008 11 C -0.153 4.153 12 C 0.027 3.973 13 C -0.572 4.572 14 H 0.065 0.935 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.152 4.152 22 C -0.004 4.004 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.102 0.898 26 H 0.234 0.766 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.042 0.958 30 H 0.098 0.902 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.793 9.954 -10.953 15.278 hybrid contribution -1.167 -2.068 1.260 2.688 sum 2.626 7.886 -9.693 12.768 Atomic orbital electron populations 1.20749 0.85654 1.04957 1.04237 1.21441 0.99816 0.86805 0.94645 1.76276 1.02206 1.26485 1.26916 1.83781 1.08423 0.94662 1.64285 1.27727 0.98579 1.05626 0.98919 1.20262 0.93703 0.95136 1.15582 1.17619 0.80886 0.83379 0.80818 1.90719 1.34899 1.79836 1.39678 1.48156 1.47229 1.11526 1.25331 1.22055 0.92349 1.00827 0.85523 1.21859 0.99300 0.98148 0.95966 1.18616 0.93741 0.92798 0.92149 1.21550 0.99357 1.43310 0.92947 0.93508 1.25590 0.95377 0.95172 1.01823 1.69930 1.10093 1.46974 1.28083 0.85752 0.78723 0.78186 0.80150 1.20258 1.20940 1.19907 1.21856 0.98489 1.00609 0.94264 1.21688 0.99083 0.81347 0.98318 0.89409 0.88678 0.89841 0.76643 0.90429 0.89615 0.95796 0.90239 0.97373 0.92951 0.94057 0.91482 0.89624 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 9.96 71.24 0.71 -1.70 16 2 C 0.15 4.18 6.75 43.14 0.29 4.47 16 3 N -0.50 -13.28 11.97 -51.08 -0.61 -13.89 16 4 S 0.33 6.69 23.69 -56.49 -1.34 5.35 16 5 C -0.16 -3.39 9.31 67.74 0.63 -2.76 16 6 C -0.23 -6.30 4.56 -20.72 -0.09 -6.39 16 7 C 0.59 19.27 6.83 86.64 0.59 19.86 16 8 O -0.57 -21.46 14.90 -4.07 -0.06 -21.52 16 9 N -0.59 -19.51 2.97 -822.04 -2.44 -21.95 16 10 C 0.11 3.76 5.88 86.51 0.51 4.27 16 11 C -0.11 -4.89 5.17 30.82 0.16 -4.74 16 12 C 0.05 2.10 2.06 -11.51 -0.02 2.08 16 13 C -0.53 -28.08 8.56 25.60 0.22 -27.86 16 14 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 15 C 0.02 1.02 5.30 84.65 0.45 1.47 16 16 N -0.91 -49.19 11.31 21.45 0.24 -48.95 16 17 Si 0.95 42.17 29.54 68.60 2.03 44.19 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.11 -4.46 5.30 30.67 0.16 -4.29 16 22 C 0.12 3.92 6.44 86.36 0.56 4.48 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.36 6.21 -2.39 -0.01 2.34 16 26 H 0.22 3.34 8.05 -2.91 -0.02 3.31 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.09 2.50 5.38 -2.38 -0.01 2.48 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 3.85 6.03 -2.39 -0.01 3.83 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 33 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.09 2.81 7.00 -2.39 -0.02 2.80 16 36 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -61.07 305.67 3.07 -58.00 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.09 Total: 9.89 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.16 Total: -11.12 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.81 Total: -84.79 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.34 Total: 5.35 kcal Total: -61.07 3.07 -58.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.065 kcal (2) G-P(sol) polarization free energy of solvation -61.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds