Wall clock time and date at job start Tue Mar 31 2020 01:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28666 * 124.92654 * 2 1 4 4 C 1.32521 * 117.87874 * 180.02562 * 3 2 1 5 5 C 1.34618 * 113.15493 * 0.02977 * 4 3 2 6 6 S 1.70911 * 124.92792 * 180.02562 * 2 1 3 7 7 C 1.50992 * 125.22495 * 179.97438 * 5 4 3 8 8 C 1.53271 * 108.58428 * 343.94565 * 7 5 4 9 9 C 1.53161 * 108.99136 * 49.27050 * 8 7 5 10 10 C 1.52128 * 124.20567 * 180.02562 * 4 3 2 11 11 H 1.08996 * 109.59863 * 282.39432 * 10 4 3 12 12 C 1.50708 * 109.58863 * 42.69542 * 10 4 3 13 13 O 1.21289 * 119.99971 * 105.51284 * 12 10 4 14 14 N 1.34771 * 120.00010 * 285.50366 * 12 10 4 15 15 C 1.46500 * 120.00098 * 5.42036 * 14 12 10 16 16 C 1.37101 * 119.99987 * 185.41604 * 14 12 10 17 17 H 1.07996 * 119.99830 * 351.12500 * 16 14 12 18 18 C 1.38953 * 119.99791 * 170.85053 * 16 14 12 19 19 N 1.31408 * 120.00020 * 341.71757 * 18 16 14 20 20 Si 1.86801 * 119.99649 * 161.71336 * 18 16 14 21 21 H 1.48499 * 109.47001 * 94.97038 * 20 18 16 22 22 H 1.48503 * 109.46902 * 214.96808 * 20 18 16 23 23 H 1.48494 * 109.47201 * 334.96743 * 20 18 16 24 24 H 1.09004 * 109.47760 * 89.99630 * 1 2 3 25 25 H 1.09002 * 109.47546 * 209.99512 * 1 2 3 26 26 H 1.08999 * 109.47125 * 329.99624 * 1 2 3 27 27 H 1.09006 * 109.61585 * 103.67318 * 7 5 4 28 28 H 1.08997 * 109.62289 * 224.21273 * 7 5 4 29 29 H 1.09003 * 109.55318 * 169.11768 * 8 7 5 30 30 H 1.08996 * 109.55523 * 289.40760 * 8 7 5 31 31 H 1.09002 * 109.47129 * 169.62045 * 9 8 7 32 32 H 1.09000 * 109.48038 * 49.60821 * 9 8 7 33 33 H 1.09004 * 109.46842 * 246.18917 * 15 14 12 34 34 H 1.08998 * 109.47411 * 6.18475 * 15 14 12 35 35 H 1.09000 * 109.47653 * 126.19118 * 15 14 12 36 36 H 0.97000 * 119.99787 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0549 0.0000 4 6 3.5588 0.8923 -0.0005 5 6 3.9323 -0.4010 -0.0016 6 16 2.4855 -1.4012 -0.0006 7 6 5.3590 -0.8955 -0.0030 8 6 6.2775 0.2639 -0.4047 9 6 5.9248 1.4938 0.4371 10 6 4.5620 2.0360 0.0000 11 1 4.6370 2.4569 -1.0027 12 6 4.1109 3.1033 0.9637 13 8 4.6722 3.2331 2.0310 14 7 3.0840 3.9137 0.6394 15 6 2.3300 3.6823 -0.5952 16 6 2.7450 4.9545 1.4649 17 1 3.2018 5.0414 2.4396 18 6 1.8179 5.9005 1.0451 19 7 1.5353 6.0218 -0.2325 20 14 0.9731 6.9999 2.2970 21 1 1.7087 8.2855 2.4030 22 1 -0.4226 7.2625 1.8632 23 1 0.9617 6.3256 3.6200 24 1 -0.3635 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 5.6260 -1.2454 0.9943 28 1 5.4633 -1.7102 -0.7195 29 1 7.3160 -0.0147 -0.2260 30 1 6.1362 0.4920 -1.4611 31 1 6.6845 2.2622 0.2938 32 1 5.8846 1.2144 1.4899 33 1 2.4926 4.5135 -1.2814 34 1 2.6686 2.7562 -1.0597 35 1 1.2677 3.6053 -0.3632 36 1 0.8884 6.6825 -0.5256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336107501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:46 Heat of formation + Delta-G solvation = 15.764957 kcal Electronic energy + Delta-G solvation = -20440.415028 eV Core-core repulsion = 17437.662693 eV Total energy + Delta-G solvation = -3002.752335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27346 -37.97213 -36.16099 -34.45508 -31.75304 -31.21887 -30.54594 -27.70517 -26.20420 -24.56779 -23.59845 -22.86651 -20.86256 -19.12893 -18.19874 -17.37251 -16.70823 -16.09607 -15.12880 -14.71199 -14.38270 -14.32208 -14.09582 -13.78680 -13.59439 -13.06841 -12.62234 -12.53486 -12.29762 -12.13482 -11.83048 -11.53336 -11.41876 -11.17460 -10.93944 -10.82807 -10.75059 -10.52080 -10.28590 -10.25280 -10.03910 -9.04799 -8.93303 -8.91019 -8.53085 -8.01182 -7.59281 -6.15148 -3.67708 0.96944 1.56127 1.95022 3.07935 3.20842 3.29764 3.38189 3.94933 4.21868 4.30335 4.87114 4.88336 5.01792 5.14520 5.27114 5.28632 5.42959 5.46491 5.56713 5.68962 5.72740 5.83117 5.91604 5.97425 6.04613 6.19383 6.26873 6.40184 6.53244 6.71060 6.80908 7.31435 7.55372 7.70540 8.12384 8.21161 8.63216 9.30705 9.61181 10.14742 10.79031 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.006552 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.140072 B = 4272.732973 C = 5201.759990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.052 3.948 3 N -0.445 5.445 4 C 0.092 3.908 5 C -0.225 4.225 6 S 0.076 5.924 7 C -0.037 4.037 8 C -0.115 4.115 9 C -0.099 4.099 10 C -0.021 4.021 11 H 0.096 0.904 12 C 0.449 3.551 13 O -0.599 6.599 14 N -0.428 5.428 15 C 0.117 3.883 16 C -0.303 4.303 17 H 0.101 0.899 18 C 0.030 3.970 19 N -0.875 5.875 20 Si 0.921 3.079 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.270 1.270 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -14.650 -4.655 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.227 4.227 3 N -0.159 5.159 4 C -0.039 4.039 5 C -0.345 4.345 6 S 0.332 5.668 7 C -0.076 4.076 8 C -0.154 4.154 9 C -0.137 4.137 10 C -0.045 4.045 11 H 0.114 0.886 12 C 0.236 3.764 13 O -0.486 6.486 14 N -0.144 5.144 15 C -0.026 4.026 16 C -0.431 4.431 17 H 0.119 0.881 18 C -0.173 4.173 19 N -0.516 5.516 20 Si 0.748 3.252 21 H -0.205 1.205 22 H -0.208 1.208 23 H -0.195 1.195 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.860 -15.020 -4.264 15.637 hybrid contribution -0.221 1.290 0.382 1.364 sum 0.639 -13.730 -3.882 14.282 Atomic orbital electron populations 1.20414 0.85434 1.04067 1.03607 1.26863 1.01541 0.90138 1.04162 1.66105 1.04698 1.30719 1.14354 1.20695 0.89358 0.93002 1.00856 1.25888 0.99546 0.95446 1.13664 1.83532 0.98477 1.13767 1.71041 1.20143 0.87320 0.98096 1.02087 1.21657 0.98613 0.94745 1.00399 1.21372 0.94717 0.96726 1.00886 1.20144 0.92060 0.91442 1.00872 0.88605 1.19407 0.83267 0.85220 0.88510 1.90481 1.58890 1.74129 1.25057 1.43525 1.25626 1.24667 1.20578 1.21765 0.95817 0.98191 0.86864 1.19721 1.22384 1.02041 0.98933 0.88136 1.25225 0.98002 0.97700 0.96333 1.70099 1.33575 1.34594 1.13286 0.86000 0.78554 0.79767 0.80881 1.20513 1.20826 1.19495 0.89823 0.90555 0.89037 0.90263 0.90712 0.90811 0.91522 0.90680 0.90303 0.90976 0.94077 0.93403 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.46 36.01 0.38 -0.54 16 2 C 0.05 0.84 7.38 -13.60 -0.10 0.74 16 3 N -0.45 -8.77 7.29 -7.32 -0.05 -8.82 16 4 C 0.09 1.75 5.71 -82.87 -0.47 1.28 16 5 C -0.23 -3.53 6.39 -35.45 -0.23 -3.76 16 6 S 0.08 1.02 23.17 -107.50 -2.49 -1.47 16 7 C -0.04 -0.45 6.28 -27.60 -0.17 -0.63 16 8 C -0.12 -1.42 5.95 -26.51 -0.16 -1.58 16 9 C -0.10 -1.66 4.75 -26.63 -0.13 -1.79 16 10 C -0.02 -0.42 2.02 -92.19 -0.19 -0.61 16 11 H 0.10 1.84 7.39 -51.93 -0.38 1.45 16 12 C 0.45 11.67 6.74 -10.98 -0.07 11.59 16 13 O -0.60 -17.39 15.40 5.55 0.09 -17.31 16 14 N -0.43 -11.74 3.02 -122.19 -0.37 -12.11 16 15 C 0.12 2.90 7.33 59.85 0.44 3.34 16 16 C -0.30 -8.91 9.49 -14.93 -0.14 -9.05 16 17 H 0.10 3.10 7.25 -52.49 -0.38 2.72 16 18 C 0.03 0.83 5.22 -17.47 -0.09 0.74 16 19 N -0.88 -24.07 10.17 55.50 0.56 -23.51 16 20 Si 0.92 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 33 H 0.07 1.88 6.53 -51.93 -0.34 1.54 16 34 H 0.04 0.91 4.01 -51.93 -0.21 0.71 16 35 H 0.05 1.24 7.81 -51.93 -0.41 0.83 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -33.40 301.67 -8.31 -41.71 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.63 Total: 0.70 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.93 Total: -0.26 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.14 Total: -44.44 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.09 Total: -17.31 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.40 -8.31 -41.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336107501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.472 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds