Wall clock time and date at job start Tue Mar 31 2020 01:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.28666 * 124.92654 * 2 1 4 4 C 1.32521 * 117.87874 * 180.02562 * 3 2 1 5 5 C 1.34618 * 113.15493 * 0.02977 * 4 3 2 6 6 S 1.70911 * 124.92792 * 180.02562 * 2 1 3 7 7 C 1.50992 * 125.22495 * 179.97438 * 5 4 3 8 8 C 1.53271 * 108.58428 * 343.94565 * 7 5 4 9 9 C 1.53161 * 108.99136 * 49.27050 * 8 7 5 10 10 C 1.52128 * 124.20567 * 180.02562 * 4 3 2 11 11 H 1.08996 * 109.59863 * 282.39432 * 10 4 3 12 12 C 1.50708 * 109.58863 * 42.69542 * 10 4 3 13 13 O 1.21289 * 119.99971 * 105.51284 * 12 10 4 14 14 N 1.34771 * 120.00010 * 285.50366 * 12 10 4 15 15 C 1.46500 * 120.00098 * 5.42036 * 14 12 10 16 16 C 1.37101 * 119.99987 * 185.41604 * 14 12 10 17 17 H 1.07996 * 119.99830 * 351.12500 * 16 14 12 18 18 C 1.38953 * 119.99791 * 170.85053 * 16 14 12 19 19 N 1.31408 * 120.00020 * 341.71757 * 18 16 14 20 20 Si 1.86801 * 119.99649 * 161.71336 * 18 16 14 21 21 H 1.48499 * 109.47001 * 94.97038 * 20 18 16 22 22 H 1.48503 * 109.46902 * 214.96808 * 20 18 16 23 23 H 1.48494 * 109.47201 * 334.96743 * 20 18 16 24 24 H 1.09004 * 109.47760 * 89.99630 * 1 2 3 25 25 H 1.09002 * 109.47546 * 209.99512 * 1 2 3 26 26 H 1.08999 * 109.47125 * 329.99624 * 1 2 3 27 27 H 1.09006 * 109.61585 * 103.67318 * 7 5 4 28 28 H 1.08997 * 109.62289 * 224.21273 * 7 5 4 29 29 H 1.09003 * 109.55318 * 169.11768 * 8 7 5 30 30 H 1.08996 * 109.55523 * 289.40760 * 8 7 5 31 31 H 1.09002 * 109.47129 * 169.62045 * 9 8 7 32 32 H 1.09000 * 109.48038 * 49.60821 * 9 8 7 33 33 H 1.09004 * 109.46842 * 246.18917 * 15 14 12 34 34 H 1.08998 * 109.47411 * 6.18475 * 15 14 12 35 35 H 1.09000 * 109.47653 * 126.19118 * 15 14 12 36 36 H 0.97000 * 119.99787 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0549 0.0000 4 6 3.5588 0.8923 -0.0005 5 6 3.9323 -0.4010 -0.0016 6 16 2.4855 -1.4012 -0.0006 7 6 5.3590 -0.8955 -0.0030 8 6 6.2775 0.2639 -0.4047 9 6 5.9248 1.4938 0.4371 10 6 4.5620 2.0360 0.0000 11 1 4.6370 2.4569 -1.0027 12 6 4.1109 3.1033 0.9637 13 8 4.6722 3.2331 2.0310 14 7 3.0840 3.9137 0.6394 15 6 2.3300 3.6823 -0.5952 16 6 2.7450 4.9545 1.4649 17 1 3.2018 5.0414 2.4396 18 6 1.8179 5.9005 1.0451 19 7 1.5353 6.0218 -0.2325 20 14 0.9731 6.9999 2.2970 21 1 1.7087 8.2855 2.4030 22 1 -0.4226 7.2625 1.8632 23 1 0.9617 6.3256 3.6200 24 1 -0.3635 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 5.6260 -1.2454 0.9943 28 1 5.4633 -1.7102 -0.7195 29 1 7.3160 -0.0147 -0.2260 30 1 6.1362 0.4920 -1.4611 31 1 6.6845 2.2622 0.2938 32 1 5.8846 1.2144 1.4899 33 1 2.4926 4.5135 -1.2814 34 1 2.6686 2.7562 -1.0597 35 1 1.2677 3.6053 -0.3632 36 1 0.8884 6.6825 -0.5256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336107501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:45 Heat of formation + Delta-G solvation = -5.648178 kcal Electronic energy + Delta-G solvation = -20441.343571 eV Core-core repulsion = 17437.662693 eV Total energy + Delta-G solvation = -3003.680878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69609 -39.80728 -37.49687 -36.49666 -33.74153 -32.37830 -32.03113 -28.91303 -28.21883 -26.48777 -24.99405 -24.19549 -22.09645 -20.88376 -19.39481 -18.98822 -18.64370 -17.98910 -16.73452 -16.36717 -16.06823 -15.75784 -15.36845 -15.13162 -15.01947 -14.51255 -14.25033 -13.91101 -13.71512 -13.42748 -13.25992 -13.16184 -13.00257 -12.76978 -12.65130 -12.58743 -12.27544 -12.19419 -12.02240 -11.71044 -11.46013 -11.06537 -10.45020 -10.28440 -10.07685 -9.73910 -9.39713 -8.27488 -5.91018 -0.22067 0.43133 0.73859 1.31911 1.35971 1.50340 1.74703 2.02896 2.26687 3.03105 3.08905 3.20504 3.75829 3.83207 3.95325 4.05940 4.13945 4.35485 4.40570 4.43825 4.64466 4.66242 4.68269 4.84430 4.95073 4.96555 5.13236 5.14102 5.15097 5.24108 5.29143 5.41798 5.43465 5.52806 6.04054 6.49259 6.90924 7.15815 7.51810 8.05781 8.65201 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.006552 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.140072 B = 4272.732973 C = 5201.759990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.028 3.972 3 N -0.499 5.499 4 C 0.049 3.951 5 C -0.222 4.222 6 S 0.163 5.837 7 C -0.039 4.039 8 C -0.104 4.104 9 C -0.095 4.095 10 C -0.014 4.014 11 H 0.098 0.902 12 C 0.439 3.561 13 O -0.641 6.641 14 N -0.445 5.445 15 C 0.143 3.857 16 C -0.351 4.351 17 H 0.071 0.929 18 C -0.001 4.001 19 N -0.888 5.888 20 Si 0.988 3.012 21 H -0.269 1.269 22 H -0.264 1.264 23 H -0.278 1.278 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -17.092 -5.640 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.251 4.251 3 N -0.213 5.213 4 C -0.082 4.082 5 C -0.343 4.343 6 S 0.420 5.580 7 C -0.079 4.079 8 C -0.143 4.143 9 C -0.134 4.134 10 C -0.038 4.038 11 H 0.116 0.884 12 C 0.228 3.772 13 O -0.531 6.531 14 N -0.160 5.160 15 C 0.000 4.000 16 C -0.479 4.479 17 H 0.089 0.911 18 C -0.203 4.203 19 N -0.526 5.526 20 Si 0.811 3.189 21 H -0.194 1.194 22 H -0.188 1.188 23 H -0.203 1.203 24 H 0.120 0.880 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.649 -17.476 -5.288 18.270 hybrid contribution -0.166 1.957 0.698 2.084 sum 0.483 -15.519 -4.590 16.191 Atomic orbital electron populations 1.20556 0.83502 1.04457 1.04928 1.27406 1.03077 0.90998 1.03581 1.66015 1.05488 1.33366 1.16476 1.20490 0.89225 0.93724 1.04718 1.26434 1.02329 0.95054 1.10516 1.83143 0.95473 1.10492 1.68915 1.20382 0.84928 0.98815 1.03753 1.21635 1.00471 0.92335 0.99819 1.21374 0.92761 0.98876 1.00358 1.20033 0.94297 0.90533 0.98969 0.88371 1.20519 0.82125 0.85668 0.88875 1.90424 1.60026 1.75415 1.27231 1.43753 1.26575 1.24653 1.21050 1.21497 0.94343 0.98562 0.85611 1.19666 1.24962 1.04312 0.98919 0.91101 1.26028 0.97414 0.98445 0.98380 1.70175 1.33285 1.34833 1.14344 0.85029 0.78137 0.77846 0.77902 1.19407 1.18818 1.20283 0.87972 0.87540 0.91225 0.89213 0.87128 0.87538 0.90509 0.91063 0.92726 0.92749 0.91570 0.95375 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 10.46 71.24 0.75 -0.97 16 2 C 0.03 0.85 7.38 88.57 0.65 1.50 16 3 N -0.50 -19.79 7.29 -177.09 -1.29 -21.08 16 4 C 0.05 1.85 5.71 42.08 0.24 2.09 16 5 C -0.22 -6.44 6.39 24.95 0.16 -6.28 16 6 S 0.16 3.88 23.17 -56.49 -1.31 2.57 16 7 C -0.04 -0.82 6.28 30.03 0.19 -0.63 16 8 C -0.10 -2.26 5.95 30.74 0.18 -2.07 16 9 C -0.10 -3.20 4.75 30.66 0.15 -3.06 16 10 C -0.01 -0.60 2.02 -11.81 -0.02 -0.62 16 11 H 0.10 3.86 7.39 -2.39 -0.02 3.84 16 12 C 0.44 24.07 6.74 87.66 0.59 24.66 16 13 O -0.64 -39.61 15.40 -3.06 -0.05 -39.65 16 14 N -0.44 -25.72 3.02 -658.89 -1.99 -27.71 16 15 C 0.14 7.40 7.33 127.77 0.94 8.33 16 16 C -0.35 -21.79 9.49 84.04 0.80 -20.99 16 17 H 0.07 4.70 7.25 -2.91 -0.02 4.68 16 18 C 0.00 -0.04 5.22 84.93 0.44 0.40 16 19 N -0.89 -49.73 10.17 21.66 0.22 -49.51 16 20 Si 0.99 45.04 29.59 68.60 2.03 47.07 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 24 H 0.10 1.95 8.14 -2.38 -0.02 1.94 16 25 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.55 8.11 -2.39 -0.02 1.53 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 33 H 0.05 2.96 6.53 -2.38 -0.02 2.94 16 34 H 0.07 3.06 4.01 -2.39 -0.01 3.05 16 35 H 0.03 1.51 7.81 -2.39 -0.02 1.49 16 36 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -77.63 301.67 3.77 -73.86 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.09 Total: 12.08 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.06 Total: 2.37 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.06 Total: -98.30 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.05 Total: -39.65 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.31 Total: 2.57 kcal Total: -77.63 3.77 -73.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336107501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.214 kcal (2) G-P(sol) polarization free energy of solvation -77.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds