Wall clock time and date at job start Tue Mar 31 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 C 1.50705 * 109.47118 * 120.00700 * 2 1 3 5 5 C 1.38401 * 120.44327 * 305.00997 * 4 2 1 6 6 C 1.38791 * 118.49246 * 179.75186 * 5 4 2 7 7 C 1.38122 * 119.30692 * 0.25078 * 6 5 4 8 8 N 1.31895 * 120.84895 * 0.02562 * 7 6 5 9 9 C 1.32376 * 121.63865 * 359.97438 * 8 7 6 10 10 N 1.39413 * 119.70040 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99610 * 354.38561 * 10 9 8 12 12 O 1.21272 * 119.99949 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99847 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.46954 * 180.02562 * 13 11 10 15 15 C 1.76201 * 99.99679 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00099 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31636 * 120.00371 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00208 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47334 * 119.99694 * 19 17 15 22 22 H 1.48504 * 109.46901 * 239.99908 * 19 17 15 23 23 H 1.09004 * 109.47158 * 299.99790 * 1 2 3 24 24 H 1.09002 * 109.47483 * 59.99561 * 1 2 3 25 25 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46714 * 239.99915 * 2 1 3 27 27 H 1.09000 * 109.46950 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47524 * 299.99907 * 3 2 1 29 29 H 1.08997 * 109.46712 * 60.00419 * 3 2 1 30 30 H 1.08003 * 120.75292 * 0.02562 * 5 4 2 31 31 H 1.07999 * 120.34971 * 180.22881 * 6 5 4 32 32 H 1.08007 * 119.57223 * 179.97438 * 7 6 5 33 33 H 0.97001 * 120.00304 * 174.38541 * 10 9 8 34 34 H 1.08995 * 109.47321 * 300.00100 * 13 11 10 35 35 H 1.09000 * 109.46683 * 60.00345 * 13 11 10 36 36 H 0.96992 * 120.00325 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 1.6207 -0.3090 2.4893 6 6 2.1045 -0.9954 3.5943 7 6 2.9798 -2.0473 3.4069 8 7 3.3589 -2.4040 2.1950 9 6 2.9197 -1.7743 1.1166 10 7 3.3465 -2.1857 -0.1453 11 6 4.2875 -3.1438 -0.2591 12 8 4.7633 -3.6477 0.7361 13 6 4.7485 -3.5889 -1.6231 14 16 6.0069 -4.8774 -1.4439 15 6 6.3566 -5.2015 -3.1402 16 1 5.8359 -4.6553 -3.9128 17 6 7.3005 -6.1594 -3.4835 18 7 7.9349 -6.8255 -2.5418 19 14 7.6719 -6.5026 -5.2818 20 1 6.8310 -5.6266 -6.1367 21 1 9.1062 -6.2293 -5.5520 22 1 7.3730 -7.9250 -5.5862 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 0.9350 0.5168 2.6088 31 1 1.8001 -0.7098 4.5904 32 1 3.3593 -2.5841 4.2638 33 1 2.9662 -1.7823 -0.9413 34 1 3.9006 -3.9849 -2.1819 35 1 5.1717 -2.7391 -2.1587 36 1 8.5948 -7.4946 -2.7817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337563984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:52 Heat of formation + Delta-G solvation = 2.622741 kcal Electronic energy + Delta-G solvation = -18917.156624 eV Core-core repulsion = 15913.834400 eV Total energy + Delta-G solvation = -3003.322224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.91490 -38.71454 -36.21311 -34.57603 -32.43787 -31.58556 -30.24276 -28.49150 -27.43419 -25.50990 -24.56014 -23.17099 -20.51126 -20.36840 -18.49680 -17.61945 -16.74002 -15.88411 -15.44480 -15.27845 -14.88776 -14.81070 -14.34331 -14.09794 -14.01281 -13.39605 -13.26083 -13.18765 -12.62277 -12.55664 -12.48921 -12.09145 -11.60235 -11.50082 -11.07750 -11.04723 -10.99882 -10.77728 -10.60780 -9.85031 -9.81219 -9.65559 -9.08219 -8.82859 -8.25291 -8.13831 -6.51602 -6.22610 -3.93602 1.08712 1.31611 2.81856 3.06708 3.21329 3.24929 3.30613 3.54824 3.92396 4.18584 4.29892 4.45228 4.63133 4.82754 4.88581 4.92694 5.06770 5.10380 5.12710 5.32740 5.34682 5.49585 5.52745 5.61953 5.62656 5.72128 5.82716 5.84558 5.95212 6.03165 6.07932 6.17572 6.33764 6.81892 7.29931 7.59028 8.15882 8.34366 8.58126 9.22722 10.84865 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.003679 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.145764 B = 7609.096013 C = 8384.148061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.143 4.143 4 C -0.173 4.173 5 C -0.046 4.046 6 C -0.213 4.213 7 C 0.130 3.870 8 N -0.473 5.473 9 C 0.374 3.626 10 N -0.667 5.667 11 C 0.518 3.482 12 O -0.446 6.446 13 C -0.153 4.153 14 S -0.055 6.055 15 C -0.536 4.536 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.413 0.587 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.674 16.496 6.609 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.201 4.201 4 C -0.179 4.179 5 C -0.072 4.072 6 C -0.234 4.234 7 C -0.028 4.028 8 N -0.186 5.186 9 C 0.142 3.858 10 N -0.316 5.316 11 C 0.303 3.697 12 O -0.312 6.312 13 C -0.304 4.304 14 S 0.171 5.829 15 C -0.685 4.685 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.174 0.826 33 H 0.251 0.749 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.076 14.727 8.113 21.928 hybrid contribution -1.057 1.225 -2.538 3.010 sum -15.132 15.952 5.575 22.683 Atomic orbital electron populations 1.21867 0.93967 1.02216 1.02040 1.19964 0.96222 0.96066 0.94556 1.21856 1.01488 0.94699 1.02017 1.20214 1.02373 0.98798 0.96467 1.21120 0.97059 0.97965 0.91074 1.21990 1.02180 0.99607 0.99640 1.22704 0.92588 0.93519 0.94035 1.67758 1.24525 1.28555 0.97802 1.18385 0.91004 0.89991 0.86371 1.44009 1.41302 1.40386 1.05931 1.20617 0.78527 0.78587 0.91996 1.90808 1.51444 1.50646 1.38302 1.23562 1.05608 1.05768 0.95445 1.85458 1.44322 1.42203 1.10897 1.22906 1.27549 1.26234 0.91763 0.90805 1.24995 0.94965 0.94918 0.98676 1.70026 1.24498 1.23238 1.32449 0.86108 0.78271 0.78257 0.82801 1.19604 1.20546 1.20549 0.92351 0.92131 0.92405 0.90892 0.92381 0.92114 0.92377 0.85006 0.85056 0.82606 0.74875 0.88971 0.88980 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.96 37.16 0.33 -0.67 16 2 C -0.05 -0.41 3.05 -91.77 -0.28 -0.69 16 3 C -0.14 -1.05 9.06 37.16 0.34 -0.72 16 4 C -0.17 -1.93 4.81 -104.28 -0.50 -2.43 16 5 C -0.05 -0.45 8.89 -39.32 -0.35 -0.79 16 6 C -0.21 -2.14 10.11 -39.42 -0.40 -2.54 16 7 C 0.13 1.71 11.18 -17.57 -0.20 1.51 16 8 N -0.47 -8.14 7.90 -12.36 -0.10 -8.24 16 9 C 0.37 5.65 7.40 -154.69 -1.14 4.50 16 10 N -0.67 -10.03 5.32 -11.43 -0.06 -10.09 16 11 C 0.52 10.17 7.81 -10.98 -0.09 10.09 16 12 O -0.45 -10.64 14.13 5.56 0.08 -10.56 16 13 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 14 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 15 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 19 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.06 0.36 7.19 -51.93 -0.37 -0.01 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.59 5.70 -51.93 -0.30 0.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 7.77 -51.93 -0.40 -0.02 16 30 H 0.13 0.90 7.25 -52.48 -0.38 0.52 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 33 H 0.41 4.64 6.33 -40.82 -0.26 4.38 16 34 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -35.71 319.74 -8.27 -43.98 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.64 Total: 0.50 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.87 Total: -7.57 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.58 Total: -43.79 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.71 -8.27 -43.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337563984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.606 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds