Wall clock time and date at job start Tue Mar 31 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 C 1.50705 * 109.47118 * 120.00700 * 2 1 3 5 5 C 1.38401 * 120.44327 * 305.00997 * 4 2 1 6 6 C 1.38791 * 118.49246 * 179.75186 * 5 4 2 7 7 C 1.38122 * 119.30692 * 0.25078 * 6 5 4 8 8 N 1.31895 * 120.84895 * 0.02562 * 7 6 5 9 9 C 1.32376 * 121.63865 * 359.97438 * 8 7 6 10 10 N 1.39413 * 119.70040 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99610 * 354.38561 * 10 9 8 12 12 O 1.21272 * 119.99949 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99847 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.46954 * 180.02562 * 13 11 10 15 15 C 1.76201 * 99.99679 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00099 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99786 * 180.02562 * 15 14 13 18 18 N 1.31636 * 120.00371 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00208 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47334 * 119.99694 * 19 17 15 22 22 H 1.48504 * 109.46901 * 239.99908 * 19 17 15 23 23 H 1.09004 * 109.47158 * 299.99790 * 1 2 3 24 24 H 1.09002 * 109.47483 * 59.99561 * 1 2 3 25 25 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46714 * 239.99915 * 2 1 3 27 27 H 1.09000 * 109.46950 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47524 * 299.99907 * 3 2 1 29 29 H 1.08997 * 109.46712 * 60.00419 * 3 2 1 30 30 H 1.08003 * 120.75292 * 0.02562 * 5 4 2 31 31 H 1.07999 * 120.34971 * 180.22881 * 6 5 4 32 32 H 1.08007 * 119.57223 * 179.97438 * 7 6 5 33 33 H 0.97001 * 120.00304 * 174.38541 * 10 9 8 34 34 H 1.08995 * 109.47321 * 300.00100 * 13 11 10 35 35 H 1.09000 * 109.46683 * 60.00345 * 13 11 10 36 36 H 0.96992 * 120.00325 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 1.6207 -0.3090 2.4893 6 6 2.1045 -0.9954 3.5943 7 6 2.9798 -2.0473 3.4069 8 7 3.3589 -2.4040 2.1950 9 6 2.9197 -1.7743 1.1166 10 7 3.3465 -2.1857 -0.1453 11 6 4.2875 -3.1438 -0.2591 12 8 4.7633 -3.6477 0.7361 13 6 4.7485 -3.5889 -1.6231 14 16 6.0069 -4.8774 -1.4439 15 6 6.3566 -5.2015 -3.1402 16 1 5.8359 -4.6553 -3.9128 17 6 7.3005 -6.1594 -3.4835 18 7 7.9349 -6.8255 -2.5418 19 14 7.6719 -6.5026 -5.2818 20 1 6.8310 -5.6266 -6.1367 21 1 9.1062 -6.2293 -5.5520 22 1 7.3730 -7.9250 -5.5862 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 0.9350 0.5168 2.6088 31 1 1.8001 -0.7098 4.5904 32 1 3.3593 -2.5841 4.2638 33 1 2.9662 -1.7823 -0.9413 34 1 3.9006 -3.9849 -2.1819 35 1 5.1717 -2.7391 -2.1587 36 1 8.5948 -7.4946 -2.7817 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337563984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:52 Heat of formation + Delta-G solvation = -20.652239 kcal Electronic energy + Delta-G solvation = -18918.165903 eV Core-core repulsion = 15913.834400 eV Total energy + Delta-G solvation = -3004.331503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.98565 -40.06231 -37.00379 -35.83179 -34.59541 -32.58505 -31.47067 -29.75276 -27.96097 -27.68395 -25.46601 -24.20995 -21.75725 -21.18021 -20.03919 -19.16113 -18.13830 -16.90395 -16.85533 -16.72703 -16.45794 -16.09305 -15.58205 -15.21403 -15.03980 -14.76615 -14.53262 -14.11380 -13.93070 -13.59074 -13.31582 -13.17634 -12.98045 -12.91912 -12.61533 -12.27977 -12.10186 -11.83971 -11.73950 -11.64124 -11.22092 -11.16709 -10.57153 -10.30472 -9.98671 -9.17966 -8.69159 -8.35725 -6.14686 0.12022 0.41741 1.20422 1.41604 1.43456 1.56464 1.62708 2.00496 2.25604 2.93920 2.98823 3.19171 3.46949 3.70884 3.75352 4.04931 4.08249 4.15336 4.23482 4.29191 4.37847 4.43372 4.55084 4.79645 4.85710 4.95891 5.02044 5.07787 5.14081 5.30784 5.33953 5.41264 5.41530 5.44010 5.85262 6.13109 6.19267 6.97770 7.05507 7.34828 8.73909 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.003679 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.145764 B = 7609.096013 C = 8384.148061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.140 4.140 4 C -0.157 4.157 5 C -0.046 4.046 6 C -0.189 4.189 7 C 0.099 3.901 8 N -0.528 5.528 9 C 0.333 3.667 10 N -0.650 5.650 11 C 0.521 3.479 12 O -0.500 6.500 13 C -0.127 4.127 14 S -0.148 6.148 15 C -0.546 4.546 16 H 0.085 0.915 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.001 2.999 20 H -0.255 1.255 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.429 0.571 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.067 19.157 5.534 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.162 4.162 5 C -0.072 4.072 6 C -0.210 4.210 7 C -0.058 4.058 8 N -0.243 5.243 9 C 0.103 3.897 10 N -0.301 5.301 11 C 0.307 3.693 12 O -0.370 6.370 13 C -0.278 4.278 14 S 0.079 5.921 15 C -0.694 4.694 16 H 0.103 0.897 17 C -0.191 4.191 18 N -0.549 5.549 19 Si 0.822 3.178 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.189 0.811 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.271 0.729 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.522 17.441 7.045 25.036 hybrid contribution -0.454 0.543 -2.058 2.176 sum -16.976 17.984 4.987 25.228 Atomic orbital electron populations 1.21853 0.92397 1.01983 1.03513 1.20081 0.97399 0.96407 0.93090 1.21844 1.00483 0.93973 1.03469 1.20546 1.00222 0.96930 0.98520 1.21628 0.96982 0.98531 0.90048 1.22382 0.99580 0.97359 1.01706 1.23007 0.94267 0.95362 0.93167 1.67557 1.26403 1.30694 0.99605 1.18646 0.93385 0.92092 0.85601 1.43597 1.40069 1.39116 1.07299 1.20443 0.78969 0.79052 0.90867 1.90789 1.53736 1.52935 1.39541 1.23372 1.03875 1.03879 0.96700 1.85667 1.48002 1.46078 1.12381 1.23246 1.27870 1.26580 0.91689 0.89661 1.26153 0.94509 0.94427 1.04059 1.70195 1.25340 1.24076 1.35260 0.84876 0.78324 0.78365 0.76185 1.17859 1.19926 1.19949 0.90987 0.90636 0.93481 0.90992 0.93954 0.90518 0.91152 0.81076 0.81348 0.81912 0.72875 0.86768 0.86700 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.96 71.98 0.64 -0.80 16 2 C -0.05 -0.70 3.05 -11.54 -0.04 -0.74 16 3 C -0.14 -1.61 9.06 71.98 0.65 -0.95 16 4 C -0.16 -3.19 4.81 -19.64 -0.09 -3.28 16 5 C -0.05 -0.73 8.89 22.44 0.20 -0.53 16 6 C -0.19 -3.31 10.11 22.37 0.23 -3.09 16 7 C 0.10 2.61 11.18 84.66 0.95 3.55 16 8 N -0.53 -18.81 7.90 -193.03 -1.52 -20.34 16 9 C 0.33 10.04 7.40 132.90 0.98 11.02 16 10 N -0.65 -19.57 5.32 -308.46 -1.64 -21.21 16 11 C 0.52 21.08 7.81 87.66 0.68 21.77 16 12 O -0.50 -25.21 14.13 -3.01 -0.04 -25.26 16 13 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 14 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 15 C -0.55 -31.41 9.50 67.95 0.65 -30.76 16 16 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 17 C 0.01 0.76 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 19 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H 0.07 0.55 7.19 -2.39 -0.02 0.54 16 24 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 1.00 5.70 -2.38 -0.01 0.99 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.64 7.77 -2.39 -0.02 0.62 16 30 H 0.17 1.39 7.25 -2.91 -0.02 1.36 16 31 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.43 9.24 6.33 -92.71 -0.59 8.65 16 34 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 35 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -82.60 319.74 4.21 -78.39 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.51 Total: 15.87 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.76 Total: -7.34 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -2.88 Total: -97.91 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.04 Total: -25.26 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -82.60 4.21 -78.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337563984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.740 kcal (2) G-P(sol) polarization free energy of solvation -82.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds