Wall clock time and date at job start Tue Mar 31 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38244 * 119.93837 * 2 1 4 4 C 1.38426 * 120.33639 * 180.02562 * 3 2 1 5 5 C 1.37895 * 120.21708 * 0.23707 * 4 3 2 6 6 C 1.39628 * 119.87875 * 359.49145 * 5 4 3 7 7 C 1.47689 * 120.16768 * 180.25541 * 6 5 4 8 8 O 1.21568 * 120.00102 * 180.26985 * 7 6 5 9 9 N 1.34782 * 119.99971 * 0.27540 * 7 6 5 10 10 C 1.46498 * 119.99765 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46679 * 179.97438 * 10 9 7 12 12 O 1.21291 * 120.00473 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.37090 * 120.00169 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00002 * 359.97438 * 14 13 11 16 16 C 1.38946 * 120.00039 * 179.97438 * 14 13 11 17 17 N 1.31420 * 120.00083 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00146 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47115 * 89.99889 * 18 16 14 20 20 H 1.48499 * 109.47483 * 209.99709 * 18 16 14 21 21 H 1.48496 * 109.47015 * 330.00045 * 18 16 14 22 22 C 1.38277 * 119.94141 * 179.97438 * 2 1 3 23 23 F 1.35103 * 120.11078 * 0.03659 * 22 2 1 24 24 H 1.08999 * 109.47500 * 89.99726 * 1 2 3 25 25 H 1.09003 * 109.47134 * 209.99660 * 1 2 3 26 26 H 1.09004 * 109.46927 * 329.99632 * 1 2 3 27 27 H 1.07998 * 119.83408 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.88768 * 179.97438 * 4 3 2 29 29 H 1.07997 * 120.06081 * 179.72318 * 5 4 3 30 30 H 0.96996 * 119.99532 * 359.97438 * 9 7 6 31 31 H 1.09000 * 109.47063 * 299.99289 * 10 9 7 32 32 H 1.08994 * 109.47729 * 59.99478 * 10 9 7 33 33 H 0.97004 * 119.99363 * 359.97438 * 13 11 10 34 34 H 0.96998 * 120.00245 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1980 0.0000 4 6 3.5812 1.2076 -0.0005 5 6 4.2834 0.0209 -0.0060 6 6 3.5958 -1.1943 -0.0003 7 6 4.3415 -2.4691 -0.0004 8 8 3.7397 -3.5254 -0.0003 9 7 5.6893 -2.4614 -0.0004 10 6 6.4290 -3.7259 -0.0011 11 6 7.9091 -3.4420 -0.0016 12 8 8.3069 -2.2962 -0.0019 13 7 8.7908 -4.4614 -0.0018 14 6 10.1372 -4.2032 -0.0028 15 1 10.4913 -3.1829 -0.0039 16 6 11.0461 -5.2541 -0.0024 17 7 12.3368 -5.0066 -0.0029 18 14 10.4336 -7.0188 -0.0012 19 1 10.2709 -7.4873 -1.4010 20 1 11.4169 -7.8837 0.6990 21 1 9.1260 -7.0884 0.6992 22 6 2.1972 -1.1982 0.0005 23 9 1.5227 -2.3689 0.0003 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6533 2.1311 -0.0004 28 1 4.1128 2.1477 -0.0009 29 1 5.3633 0.0313 -0.0109 30 1 6.1694 -1.6186 -0.0007 31 1 6.1691 -4.2994 0.8887 32 1 6.1689 -4.2986 -0.8912 33 1 8.4726 -5.3778 -0.0012 34 1 12.9713 -5.7403 -0.0030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343507455.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:43 Heat of formation + Delta-G solvation = -91.488854 kcal Electronic energy + Delta-G solvation = -20715.478314 eV Core-core repulsion = 17141.861929 eV Total energy + Delta-G solvation = -3573.616385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.94716 -40.14140 -38.86721 -38.11119 -34.62988 -33.89847 -33.14764 -31.83336 -31.05574 -28.17563 -27.11238 -24.80321 -23.50974 -22.05928 -20.32436 -19.71185 -18.82646 -17.86261 -17.22945 -16.79492 -15.97137 -15.79210 -15.24958 -15.23136 -15.10828 -14.77317 -14.36263 -13.94487 -13.67228 -13.54746 -13.36593 -13.08743 -12.79437 -12.51714 -12.30826 -12.21281 -12.01505 -11.97928 -11.52928 -11.25648 -10.66238 -10.09202 -9.92140 -9.72872 -9.29049 -8.95410 -8.86486 -8.81932 -8.33533 -6.43483 -3.96245 0.49826 0.88428 2.72136 2.97994 3.02755 3.09158 3.13659 3.49004 3.55910 3.97490 4.01454 4.32207 4.46067 4.50011 4.62092 4.85091 4.87653 5.11361 5.20445 5.26574 5.35847 5.61952 5.63176 5.73097 5.76305 5.77108 5.84196 5.92748 6.04037 6.45740 6.53705 7.40789 7.62119 7.96736 8.25010 8.42184 8.78476 9.26630 9.59448 10.68548 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038784 B = 0.003340 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.779829 B = 8381.545605 C = 9082.879192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.135 4.135 3 C -0.070 4.070 4 C -0.134 4.134 5 C -0.061 4.061 6 C -0.164 4.164 7 C 0.555 3.445 8 O -0.533 6.533 9 N -0.701 5.701 10 C 0.106 3.894 11 C 0.438 3.562 12 O -0.580 6.580 13 N -0.575 5.575 14 C -0.311 4.311 15 H 0.122 0.878 16 C 0.046 3.954 17 N -0.873 5.873 18 Si 0.879 3.121 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.267 1.267 22 C 0.156 3.844 23 F -0.114 7.114 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.411 0.589 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.375 0.625 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.693 9.679 -0.028 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 C -0.088 4.088 4 C -0.152 4.152 5 C -0.080 4.080 6 C -0.168 4.168 7 C 0.341 3.659 8 O -0.411 6.411 9 N -0.356 5.356 10 C -0.021 4.021 11 C 0.223 3.777 12 O -0.465 6.465 13 N -0.212 5.212 14 C -0.439 4.439 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.512 5.512 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.192 1.192 22 C 0.135 3.865 23 F -0.092 7.092 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.208 0.792 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.592 9.526 -0.027 22.688 hybrid contribution 0.007 -1.302 0.011 1.302 sum -20.584 8.224 -0.016 22.166 Atomic orbital electron populations 1.20728 0.89689 1.03527 1.02998 1.19933 0.97349 0.91614 1.04665 1.21119 0.94229 0.97028 0.96421 1.21169 0.94075 0.98457 1.01521 1.21382 1.00755 0.90798 0.95024 1.20064 0.92405 0.94808 1.09505 1.17947 0.82136 0.88411 0.77400 1.90822 1.68579 1.31921 1.49826 1.45562 1.05396 1.10616 1.73992 1.21012 0.91065 0.86426 1.03615 1.19595 0.86717 0.86160 0.85179 1.90530 1.79331 1.20740 1.55849 1.42118 1.07072 1.06787 1.65220 1.19441 0.78388 0.97354 1.48739 0.86039 1.25070 0.95093 0.98644 0.97060 1.69618 1.00608 1.32983 1.48003 0.86668 0.79145 0.84506 0.79176 1.19355 1.19947 1.19201 1.17522 0.88472 0.81552 0.98957 1.91573 1.79507 1.45380 1.92735 0.90663 0.90989 0.90785 0.84622 0.84483 0.84073 0.74930 0.89454 0.89451 0.79190 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.83 36.01 0.35 -0.46 16 2 C -0.13 -1.31 5.88 -104.60 -0.62 -1.93 16 3 C -0.07 -0.54 9.69 -39.51 -0.38 -0.93 16 4 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 5 C -0.06 -0.65 9.54 -39.19 -0.37 -1.03 16 6 C -0.16 -2.23 5.88 -104.91 -0.62 -2.84 16 7 C 0.55 9.17 7.77 -12.40 -0.10 9.07 16 8 O -0.53 -10.39 15.34 5.31 0.08 -10.30 16 9 N -0.70 -11.46 5.48 -62.48 -0.34 -11.81 16 10 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16 11 C 0.44 9.54 7.85 -10.98 -0.09 9.46 16 12 O -0.58 -14.39 15.24 5.55 0.08 -14.31 16 13 N -0.57 -13.27 5.09 -10.96 -0.06 -13.33 16 14 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 15 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 16 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 17 N -0.87 -24.79 13.96 55.50 0.77 -24.02 16 18 Si 0.88 18.93 27.74 -169.99 -4.71 14.21 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 22 C 0.16 2.04 7.22 -38.96 -0.28 1.76 16 23 F -0.11 -1.73 14.76 2.25 0.03 -1.69 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.56 7.64 -51.93 -0.40 0.17 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.14 1.39 6.40 -52.49 -0.34 1.05 16 30 H 0.41 6.42 5.47 -40.82 -0.22 6.20 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 34 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 303.43 15.07 4.57 4.57 Total: -1.00 -33.15 303.43 -5.62 -38.77 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.28 Total: 12.02 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.78 Total: 5.88 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.38 Total: -49.15 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.69 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.15 -5.62 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343507455.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.720 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds