Wall clock time and date at job start Tue Mar 31 2020 01:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37865 * 120.05721 * 2 1 4 4 C 1.38627 * 120.11873 * 179.97438 * 3 2 1 5 5 F 1.35102 * 119.88316 * 179.97438 * 4 3 2 6 6 C 1.38680 * 120.23942 * 359.97438 * 4 3 2 7 7 C 1.37814 * 120.11927 * 0.02562 * 6 4 3 8 8 C 1.39630 * 120.06356 * 179.97438 * 2 1 3 9 9 C 1.47715 * 120.11750 * 359.74794 * 8 2 1 10 10 O 1.21576 * 120.00170 * 353.99496 * 9 8 2 11 11 N 1.34774 * 120.00208 * 173.99773 * 9 8 2 12 12 C 1.46499 * 120.00357 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47538 * 179.97438 * 12 11 9 14 14 O 1.21301 * 119.99938 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00582 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00602 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99893 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00460 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00056 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00223 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46794 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47086 * 120.00116 * 20 18 16 23 23 H 1.48501 * 109.46892 * 240.00048 * 20 18 16 24 24 H 1.08996 * 109.47785 * 263.47736 * 1 2 3 25 25 H 1.09003 * 109.47301 * 23.48340 * 1 2 3 26 26 H 1.09004 * 109.46826 * 143.47815 * 1 2 3 27 27 H 1.07998 * 119.93592 * 359.95233 * 3 2 1 28 28 H 1.08001 * 119.94178 * 180.02562 * 6 4 3 29 29 H 1.07994 * 120.05878 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99956 * 359.97438 * 11 9 8 31 31 H 1.09001 * 109.47324 * 300.00165 * 12 11 9 32 32 H 1.09002 * 109.46831 * 60.00186 * 12 11 9 33 33 H 0.96999 * 119.99945 * 0.02562 * 15 13 12 34 34 H 0.96993 * 120.00429 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1933 0.0000 4 6 3.5837 1.1947 0.0005 5 9 4.2556 2.3669 0.0000 6 6 4.2834 -0.0026 0.0016 7 6 3.6031 -1.2011 0.0016 8 6 2.2065 -1.2085 0.0005 9 6 1.4719 -2.4900 0.0067 10 8 0.2616 -2.4965 0.1215 11 7 2.1434 -3.6522 -0.1148 12 6 1.4150 -4.9233 -0.1081 13 6 2.3905 -6.0621 -0.2581 14 8 3.5776 -5.8345 -0.3601 15 7 1.9440 -7.3336 -0.2790 16 6 2.8314 -8.3696 -0.4160 17 1 3.8883 -8.1669 -0.5068 18 6 2.3710 -9.6804 -0.4380 19 7 1.0850 -9.9271 -0.3280 20 14 3.5802 -11.0921 -0.6240 21 1 4.9595 -10.5518 -0.7287 22 1 3.4859 -11.9838 0.5596 23 1 3.2565 -11.8627 -1.8514 24 1 -0.3634 -0.1167 1.0209 25 1 -0.3634 0.9426 -0.4095 26 1 -0.3633 -0.8259 -0.6116 27 1 1.6574 2.1285 -0.0008 28 1 5.3634 0.0042 0.0024 29 1 4.1490 -2.1329 0.0020 30 1 3.1090 -3.6471 -0.2067 31 1 0.8757 -5.0280 0.8333 32 1 0.7068 -4.9405 -0.9365 33 1 0.9948 -7.5157 -0.1978 34 1 0.7635 -10.8421 -0.3438 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343513129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:00 Heat of formation + Delta-G solvation = -97.125241 kcal Electronic energy + Delta-G solvation = -20563.512547 eV Core-core repulsion = 16989.651750 eV Total energy + Delta-G solvation = -3573.860797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.20048 -40.41038 -38.66529 -37.83763 -34.70815 -33.90362 -32.68836 -31.49063 -31.12079 -28.06297 -26.95110 -24.67498 -23.61070 -21.99179 -20.49880 -19.65447 -18.30295 -17.79546 -17.38842 -16.75297 -15.93554 -15.80919 -15.38379 -15.22468 -15.09157 -14.49607 -14.17785 -14.02406 -13.69730 -13.52930 -13.35186 -13.18697 -12.87112 -12.27439 -12.14908 -12.00664 -11.85396 -11.66826 -11.27319 -11.17321 -10.43902 -10.35962 -9.68936 -9.64623 -9.22345 -9.07079 -8.73763 -8.69089 -8.14573 -6.55525 -3.97672 0.50779 0.95495 2.70783 3.07484 3.18617 3.22510 3.29277 3.56495 3.69719 3.89994 4.07789 4.40038 4.53021 4.71139 4.80126 4.85408 5.05310 5.13090 5.41394 5.54019 5.58040 5.70878 5.79636 5.84756 5.89372 5.89929 6.00792 6.06508 6.31847 6.55971 6.61716 7.42541 7.68945 7.87721 8.30868 8.40685 9.00512 9.34581 9.82007 10.61331 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.035598 B = 0.003118 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.377649 B = 8976.584130 C = 9738.355709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.006 3.994 3 C -0.169 4.169 4 C 0.124 3.876 5 F -0.137 7.137 6 C -0.169 4.169 7 C -0.049 4.049 8 C -0.146 4.146 9 C 0.556 3.444 10 O -0.538 6.538 11 N -0.701 5.701 12 C 0.109 3.891 13 C 0.427 3.573 14 O -0.598 6.598 15 N -0.548 5.548 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.410 0.590 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 18.171 0.711 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.004 3.996 3 C -0.188 4.188 4 C 0.105 3.895 5 F -0.116 7.116 6 C -0.187 4.187 7 C -0.068 4.068 8 C -0.149 4.149 9 C 0.343 3.657 10 O -0.418 6.418 11 N -0.355 5.355 12 C -0.018 4.018 13 C 0.212 3.788 14 O -0.485 6.485 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.249 0.751 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.230 0.770 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.496 18.104 0.722 18.125 hybrid contribution 0.655 -0.688 -0.055 0.952 sum 1.151 17.416 0.667 17.467 Atomic orbital electron populations 1.21134 0.89148 1.03368 1.04176 1.19882 0.97266 0.90418 0.91987 1.20997 0.92088 0.99297 1.06402 1.17932 0.90193 0.81230 1.00158 1.91513 1.80524 1.45988 1.93541 1.21066 1.01238 0.90834 1.05596 1.21308 0.92983 0.98413 0.94111 1.19889 0.93555 0.93568 1.07929 1.18046 0.87058 0.83431 0.77131 1.90720 1.13495 1.87189 1.50386 1.45644 1.12193 1.04807 1.72878 1.20986 0.94579 0.82882 1.03401 1.19721 0.89085 0.84151 0.85814 1.90495 1.16834 1.83853 1.57346 1.41797 1.10508 1.04090 1.61811 1.19785 0.91963 0.84238 1.47495 0.87582 1.25334 0.96706 0.98901 0.96748 1.69616 1.12911 1.21835 1.49017 0.85754 0.80232 0.80194 0.77900 1.19102 1.20583 1.20587 0.90145 0.92262 0.88014 0.84161 0.84038 0.83976 0.75092 0.89576 0.89592 0.77006 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.72 36.00 0.31 -1.01 16 2 C 0.01 0.07 5.91 -104.24 -0.62 -0.55 16 3 C -0.17 -1.70 9.64 -39.57 -0.38 -2.08 16 4 C 0.12 1.30 7.31 -39.27 -0.29 1.01 16 5 F -0.14 -1.45 17.26 2.25 0.04 -1.42 16 6 C -0.17 -1.68 10.01 -39.57 -0.40 -2.08 16 7 C -0.05 -0.55 9.52 -39.20 -0.37 -0.92 16 8 C -0.15 -1.87 5.87 -104.97 -0.62 -2.49 16 9 C 0.56 8.50 7.70 -12.39 -0.10 8.40 16 10 O -0.54 -9.20 13.34 5.30 0.07 -9.13 16 11 N -0.70 -11.23 5.48 -62.47 -0.34 -11.57 16 12 C 0.11 1.92 6.15 -5.20 -0.03 1.89 16 13 C 0.43 9.48 7.85 -10.99 -0.09 9.39 16 14 O -0.60 -14.84 15.24 5.54 0.08 -14.76 16 15 N -0.55 -13.25 5.29 -10.96 -0.06 -13.30 16 16 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 17 H 0.11 2.95 7.16 -52.48 -0.38 2.58 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.49 13.05 55.50 0.72 -22.77 16 20 Si 0.93 20.21 29.55 -169.99 -5.02 15.18 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 26 H 0.10 1.31 5.86 -51.93 -0.30 1.00 16 27 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 28 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.14 1.44 6.45 -52.49 -0.34 1.10 16 30 H 0.41 6.39 5.50 -40.82 -0.22 6.16 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.40 9.20 7.90 -40.82 -0.32 8.88 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -29.77 304.16 -5.96 -35.73 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -3.23 Total: 13.59 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.81 Total: 3.86 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.32 Total: -47.64 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.16 Total: -23.89 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.77 -5.96 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343513129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.392 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds