Wall clock time and date at job start Tue Mar 31 2020 01:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37865 * 120.05721 * 2 1 4 4 C 1.38627 * 120.11873 * 179.97438 * 3 2 1 5 5 F 1.35102 * 119.88316 * 179.97438 * 4 3 2 6 6 C 1.38680 * 120.23942 * 359.97438 * 4 3 2 7 7 C 1.37814 * 120.11927 * 0.02562 * 6 4 3 8 8 C 1.39630 * 120.06356 * 179.97438 * 2 1 3 9 9 C 1.47715 * 120.11750 * 359.74794 * 8 2 1 10 10 O 1.21576 * 120.00170 * 353.99496 * 9 8 2 11 11 N 1.34774 * 120.00208 * 173.99773 * 9 8 2 12 12 C 1.46499 * 120.00357 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47538 * 179.97438 * 12 11 9 14 14 O 1.21301 * 119.99938 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00582 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00602 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99893 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00460 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00056 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00223 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46794 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47086 * 120.00116 * 20 18 16 23 23 H 1.48501 * 109.46892 * 240.00048 * 20 18 16 24 24 H 1.08996 * 109.47785 * 263.47736 * 1 2 3 25 25 H 1.09003 * 109.47301 * 23.48340 * 1 2 3 26 26 H 1.09004 * 109.46826 * 143.47815 * 1 2 3 27 27 H 1.07998 * 119.93592 * 359.95233 * 3 2 1 28 28 H 1.08001 * 119.94178 * 180.02562 * 6 4 3 29 29 H 1.07994 * 120.05878 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99956 * 359.97438 * 11 9 8 31 31 H 1.09001 * 109.47324 * 300.00165 * 12 11 9 32 32 H 1.09002 * 109.46831 * 60.00186 * 12 11 9 33 33 H 0.96999 * 119.99945 * 0.02562 * 15 13 12 34 34 H 0.96993 * 120.00429 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1933 0.0000 4 6 3.5837 1.1947 0.0005 5 9 4.2556 2.3669 0.0000 6 6 4.2834 -0.0026 0.0016 7 6 3.6031 -1.2011 0.0016 8 6 2.2065 -1.2085 0.0005 9 6 1.4719 -2.4900 0.0067 10 8 0.2616 -2.4965 0.1215 11 7 2.1434 -3.6522 -0.1148 12 6 1.4150 -4.9233 -0.1081 13 6 2.3905 -6.0621 -0.2581 14 8 3.5776 -5.8345 -0.3601 15 7 1.9440 -7.3336 -0.2790 16 6 2.8314 -8.3696 -0.4160 17 1 3.8883 -8.1669 -0.5068 18 6 2.3710 -9.6804 -0.4380 19 7 1.0850 -9.9271 -0.3280 20 14 3.5802 -11.0921 -0.6240 21 1 4.9595 -10.5518 -0.7287 22 1 3.4859 -11.9838 0.5596 23 1 3.2565 -11.8627 -1.8514 24 1 -0.3634 -0.1167 1.0209 25 1 -0.3634 0.9426 -0.4095 26 1 -0.3633 -0.8259 -0.6116 27 1 1.6574 2.1285 -0.0008 28 1 5.3634 0.0042 0.0024 29 1 4.1490 -2.1329 0.0020 30 1 3.1090 -3.6471 -0.2067 31 1 0.8757 -5.0280 0.8333 32 1 0.7068 -4.9405 -0.9365 33 1 0.9948 -7.5157 -0.1978 34 1 0.7635 -10.8421 -0.3438 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343513129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:00 Heat of formation + Delta-G solvation = -116.718215 kcal Electronic energy + Delta-G solvation = -20564.362162 eV Core-core repulsion = 16989.651750 eV Total energy + Delta-G solvation = -3574.710412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.02323 -41.52683 -40.23547 -39.08582 -36.31448 -35.52234 -33.60927 -33.37719 -32.14272 -29.37351 -28.03328 -26.43113 -24.61521 -22.91031 -21.65387 -21.35491 -20.09991 -19.12841 -18.24592 -17.74748 -17.42066 -16.88421 -16.63368 -16.58107 -16.51434 -15.99809 -15.60295 -15.51991 -14.87071 -14.43147 -14.34045 -14.23591 -13.95696 -13.80319 -13.55138 -13.50885 -12.98166 -12.90962 -12.77971 -12.44356 -12.10985 -12.08331 -11.57986 -10.82272 -10.56592 -10.28171 -10.09328 -10.04382 -9.73508 -8.51330 -6.01357 -0.40734 0.13994 1.35192 1.43503 1.57176 1.66156 1.90617 1.96068 2.31206 2.60572 3.06993 3.10974 3.16191 3.60050 3.61358 3.76133 4.06084 4.17295 4.24965 4.42701 4.43482 4.61530 4.70899 4.76987 4.84477 5.00558 5.04997 5.14546 5.29362 5.38785 5.50113 5.74470 5.91856 6.42889 6.49694 7.03427 7.08522 7.44146 7.94113 8.65758 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.035598 B = 0.003118 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.377649 B = 8976.584130 C = 9738.355709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.001 4.001 3 C -0.162 4.162 4 C 0.123 3.877 5 F -0.136 7.136 6 C -0.165 4.165 7 C -0.051 4.051 8 C -0.165 4.165 9 C 0.557 3.443 10 O -0.559 6.559 11 N -0.704 5.704 12 C 0.122 3.878 13 C 0.432 3.568 14 O -0.624 6.624 15 N -0.559 5.559 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.010 4.010 19 N -0.916 5.916 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.272 1.272 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.148 0.852 30 H 0.412 0.588 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.399 0.601 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 19.252 0.716 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.002 4.002 3 C -0.181 4.181 4 C 0.104 3.896 5 F -0.115 7.115 6 C -0.183 4.183 7 C -0.069 4.069 8 C -0.168 4.168 9 C 0.346 3.654 10 O -0.440 6.440 11 N -0.358 5.358 12 C -0.006 4.006 13 C 0.219 3.781 14 O -0.512 6.512 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.819 3.181 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.197 1.197 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.183 0.817 28 H 0.181 0.819 29 H 0.165 0.835 30 H 0.251 0.749 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.233 0.767 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.910 19.207 0.728 19.242 hybrid contribution 0.537 -0.897 -0.053 1.047 sum 1.447 18.309 0.676 18.379 Atomic orbital electron populations 1.21072 0.88849 1.03854 1.03690 1.20003 0.97623 0.90481 0.92134 1.21190 0.92090 0.99653 1.05157 1.18063 0.90462 0.81332 0.99756 1.91522 1.80526 1.45957 1.93476 1.21282 1.02374 0.90194 1.04479 1.21373 0.92347 0.99218 0.93983 1.19805 0.94245 0.92641 1.10130 1.18421 0.86913 0.83860 0.76179 1.90715 1.14448 1.87534 1.51321 1.45645 1.12234 1.04483 1.73474 1.20808 0.93452 0.81869 1.04443 1.20424 0.89418 0.84570 0.83667 1.90472 1.18426 1.84426 1.57902 1.41842 1.10378 1.04467 1.62729 1.19775 0.91624 0.85641 1.49523 0.89532 1.26115 0.98405 1.00679 0.95886 1.69678 1.14097 1.22678 1.49152 0.84823 0.77863 0.77122 0.78256 1.19382 1.19686 1.19698 0.90448 0.89626 0.90276 0.81741 0.81899 0.83466 0.74852 0.88425 0.88438 0.76664 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.72 71.23 0.62 -1.80 16 2 C 0.00 -0.03 5.91 -19.62 -0.12 -0.14 16 3 C -0.16 -2.86 9.64 22.27 0.21 -2.65 16 4 C 0.12 2.27 7.31 22.47 0.16 2.43 16 5 F -0.14 -2.54 17.26 44.97 0.78 -1.76 16 6 C -0.16 -2.93 10.01 22.27 0.22 -2.71 16 7 C -0.05 -1.05 9.52 22.52 0.21 -0.84 16 8 C -0.16 -4.07 5.87 -20.09 -0.12 -4.19 16 9 C 0.56 16.83 7.70 86.75 0.67 17.50 16 10 O -0.56 -19.03 13.34 -3.95 -0.05 -19.08 16 11 N -0.70 -22.33 5.48 -469.84 -2.57 -24.90 16 12 C 0.12 4.26 6.15 85.63 0.53 4.79 16 13 C 0.43 19.37 7.85 87.66 0.69 20.05 16 14 O -0.62 -31.32 15.24 -3.09 -0.05 -31.37 16 15 N -0.56 -27.44 5.29 -306.99 -1.62 -29.06 16 16 C -0.34 -18.23 9.68 84.04 0.81 -17.41 16 17 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 18 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 19 N -0.92 -48.02 13.05 21.66 0.28 -47.74 16 20 Si 1.00 41.19 29.55 68.60 2.03 43.22 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 26 H 0.08 2.01 5.86 -2.38 -0.01 2.00 16 27 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.15 2.85 6.45 -2.91 -0.02 2.83 16 30 H 0.41 12.77 5.50 -92.71 -0.51 12.26 16 31 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 34 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -63.10 304.16 3.09 -60.01 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -0.07 Total: 35.71 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 4.37 Total: 14.98 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -3.91 Total: -101.71 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.10 Total: -50.45 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -63.10 3.09 -60.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343513129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.710 kcal (2) G-P(sol) polarization free energy of solvation -63.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds