Wall clock time and date at job start Tue Mar 31 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38347 * 119.91102 * 2 1 4 4 C 1.38549 * 120.26638 * 179.97438 * 3 2 1 5 5 F 1.35105 * 119.95541 * 180.02562 * 4 3 2 6 6 C 1.38215 * 120.09537 * 0.02654 * 4 3 2 7 7 C 1.39531 * 119.82437 * 359.97438 * 6 4 3 8 8 C 1.47847 * 120.13503 * 179.97438 * 7 6 4 9 9 O 1.21556 * 120.00459 * 180.02562 * 8 7 6 10 10 N 1.34781 * 119.99678 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99718 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.46767 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00570 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00004 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00288 * 180.02562 * 14 12 11 16 16 H 1.07991 * 119.99996 * 359.97438 * 15 14 12 17 17 C 1.38955 * 119.99999 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99686 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00018 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47001 * 89.99392 * 19 17 15 21 21 H 1.48499 * 109.47134 * 209.99668 * 19 17 15 22 22 H 1.48502 * 109.46960 * 329.99735 * 19 17 15 23 23 C 1.37943 * 119.91639 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47022 * 90.00074 * 1 2 3 25 25 H 1.08999 * 109.46903 * 209.99572 * 1 2 3 26 26 H 1.08996 * 109.47382 * 329.99628 * 1 2 3 27 27 H 1.07997 * 119.86585 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.09181 * 179.72723 * 6 4 3 29 29 H 0.97000 * 120.00252 * 0.02562 * 10 8 7 30 30 H 1.09004 * 109.46715 * 299.99634 * 11 10 8 31 31 H 1.08995 * 109.47016 * 59.99896 * 11 10 8 32 32 H 0.97005 * 119.99569 * 359.97438 * 14 12 11 33 33 H 0.97005 * 119.99476 * 180.02562 * 18 17 15 34 34 H 1.08000 * 120.04737 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1992 0.0000 4 6 3.5823 1.2078 0.0005 5 9 4.2496 2.3825 0.0011 6 6 4.2828 0.0163 0.0005 7 6 3.5909 -1.1954 0.0005 8 6 4.3333 -2.4740 -0.0001 9 8 3.7281 -3.5282 -0.0006 10 7 5.6811 -2.4706 -0.0001 11 6 6.4167 -3.7376 -0.0001 12 6 7.8976 -3.4585 0.0005 13 8 8.2991 -2.3140 0.0014 14 7 8.7760 -4.4808 0.0011 15 6 10.1233 -4.2269 0.0023 16 1 10.4807 -3.2079 0.0022 17 6 11.0288 -5.2809 0.0024 18 7 10.5938 -6.5209 0.0019 19 14 12.8645 -4.9350 0.0031 20 1 13.3504 -4.8436 1.4034 21 1 13.5757 -6.0348 -0.6968 22 1 13.1267 -3.6517 -0.6966 23 6 2.1949 -1.1956 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6532 2.1324 -0.0004 28 1 5.3627 0.0230 -0.0035 29 1 6.1640 -1.6294 0.0007 30 1 6.1548 -4.3098 0.8900 31 1 6.1548 -4.3098 -0.8900 32 1 8.4549 -5.3961 0.0016 33 1 11.2260 -7.2566 0.0023 34 1 1.6543 -2.1306 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344171653.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:45 Heat of formation + Delta-G solvation = -122.655679 kcal Electronic energy + Delta-G solvation = -20411.208931 eV Core-core repulsion = 16836.241051 eV Total energy + Delta-G solvation = -3574.967880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.98558 -41.46239 -40.25382 -39.31013 -36.32083 -35.50019 -33.91516 -33.38101 -31.88350 -29.49917 -27.95467 -26.65464 -24.73749 -23.00297 -21.45427 -21.41035 -20.13868 -19.19670 -17.96179 -17.57574 -17.27345 -17.06006 -16.91081 -16.63298 -16.57300 -16.31461 -15.73479 -15.54049 -15.09877 -14.48409 -14.43348 -14.28671 -13.91902 -13.68130 -13.56560 -13.07103 -12.93095 -12.71316 -12.68820 -12.53673 -12.47713 -12.13725 -11.59351 -11.26657 -10.60509 -10.38939 -10.12414 -10.00820 -9.77730 -8.53166 -6.03445 -0.41411 0.04180 1.34901 1.41959 1.54363 1.60984 1.87189 1.87738 2.28989 2.57887 3.02122 3.07476 3.14047 3.48436 3.61223 3.97472 3.99726 4.13964 4.18027 4.34025 4.38497 4.45569 4.64819 4.82035 4.88174 4.95340 5.08784 5.13650 5.26979 5.36571 5.37598 5.74502 5.89156 6.33381 6.45936 6.95889 7.01453 7.40992 7.91395 8.63698 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032674 B = 0.003152 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.745283 B = 8880.111335 C = 9716.409969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.059 4.059 3 C -0.120 4.120 4 C 0.086 3.914 5 F -0.142 7.142 6 C -0.135 4.135 7 C -0.112 4.112 8 C 0.559 3.441 9 O -0.567 6.567 10 N -0.703 5.703 11 C 0.120 3.880 12 C 0.431 3.569 13 O -0.625 6.625 14 N -0.557 5.557 15 C -0.338 4.338 16 H 0.086 0.914 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.075 4.075 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.170 0.830 28 H 0.138 0.862 29 H 0.412 0.588 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.400 0.600 33 H 0.280 0.720 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.907 11.606 -0.025 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.139 4.139 4 C 0.067 3.933 5 F -0.120 7.120 6 C -0.154 4.154 7 C -0.115 4.115 8 C 0.347 3.653 9 O -0.447 6.447 10 N -0.357 5.357 11 C -0.008 4.008 12 C 0.218 3.782 13 O -0.514 6.514 14 N -0.192 5.192 15 C -0.468 4.468 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.094 4.094 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.187 0.813 28 H 0.155 0.845 29 H 0.252 0.748 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.888 11.438 -0.029 22.081 hybrid contribution 1.604 -0.074 0.002 1.605 sum -17.284 11.364 -0.027 20.685 Atomic orbital electron populations 1.20927 0.87166 1.04737 1.04166 1.20058 0.98480 0.90651 0.96702 1.21556 0.91250 1.00920 1.00157 1.17628 0.91062 0.80519 1.04095 1.91519 1.81015 1.45416 1.94063 1.21381 1.01235 0.91128 1.01705 1.19580 0.94885 0.91099 1.05958 1.18460 0.81535 0.89338 0.75973 1.90746 1.68819 1.33360 1.51818 1.45676 1.06013 1.10248 1.73732 1.20860 0.88115 0.87005 1.04776 1.20395 0.88563 0.85485 0.83761 1.90476 1.80416 1.22326 1.58156 1.41830 1.05918 1.08262 1.63220 1.19737 0.81818 0.94691 1.50507 0.89609 1.26129 1.05003 0.94209 0.95690 1.69678 1.37671 0.99023 1.49118 0.84871 0.76258 0.78141 0.78746 1.19522 1.19560 1.19495 1.21397 0.91652 0.99916 0.96425 0.89217 0.90183 0.89160 0.81294 0.84452 0.74845 0.88214 0.88204 0.76596 0.90997 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 71.23 0.71 -0.21 16 2 C -0.06 -0.90 5.87 -19.91 -0.12 -1.01 16 3 C -0.12 -1.88 9.67 22.37 0.22 -1.66 16 4 C 0.09 1.83 7.29 22.34 0.16 2.00 16 5 F -0.14 -3.25 17.26 44.97 0.78 -2.47 16 6 C -0.13 -3.28 9.52 22.58 0.21 -3.07 16 7 C -0.11 -2.90 5.87 -20.09 -0.12 -3.02 16 8 C 0.56 17.90 7.77 86.79 0.67 18.58 16 9 O -0.57 -20.72 16.35 -3.89 -0.06 -20.79 16 10 N -0.70 -23.74 5.48 -469.69 -2.57 -26.32 16 11 C 0.12 4.37 6.15 85.63 0.53 4.90 16 12 C 0.43 19.91 7.85 87.65 0.69 20.60 16 13 O -0.63 -32.50 15.24 -3.06 -0.05 -32.54 16 14 N -0.56 -27.90 5.29 -306.99 -1.62 -29.52 16 15 C -0.34 -18.63 9.68 84.04 0.81 -17.82 16 16 H 0.09 4.98 7.16 -2.92 -0.02 4.96 16 17 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 18 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 19 Si 1.00 41.71 29.55 68.60 2.03 43.74 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 C -0.07 -1.57 9.24 22.53 0.21 -1.36 16 24 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 26 H 0.09 0.43 8.08 -2.39 -0.02 0.41 16 27 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 28 H 0.14 3.42 6.40 -2.91 -0.02 3.41 16 29 H 0.41 13.89 5.47 -92.71 -0.51 13.38 16 30 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.40 19.14 7.90 -92.70 -0.73 18.41 16 33 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 34 H 0.15 2.96 7.65 -2.91 -0.02 2.93 16 Total: -1.00 -66.16 309.51 3.16 -63.00 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.07 Total: 35.16 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 4.45 Total: 17.90 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -3.91 Total: -103.99 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.11 Total: -53.33 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -66.16 3.16 -63.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344171653.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.657 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds