Wall clock time and date at job start Tue Mar 31 2020 01:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38455 * 119.83018 * 2 1 4 4 C 1.37851 * 120.22025 * 179.97438 * 3 2 1 5 5 C 1.39664 * 119.87913 * 0.02562 * 4 3 2 6 6 C 1.47686 * 120.16877 * 179.97438 * 5 4 3 7 7 O 1.21573 * 120.00206 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00054 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00219 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47443 * 180.02562 * 9 8 6 11 11 O 1.21295 * 119.99473 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00191 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00373 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99851 * 359.97438 * 13 12 10 15 15 C 1.38953 * 120.00442 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99768 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46881 * 60.00601 * 17 15 13 19 19 H 1.48510 * 109.46738 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47574 * 299.99592 * 17 15 13 21 21 C 1.39823 * 119.66290 * 359.97438 * 5 4 3 22 22 F 1.35104 * 120.10949 * 180.02562 * 21 5 4 23 23 C 1.38209 * 119.82798 * 180.27915 * 2 1 3 24 24 H 1.09011 * 109.47145 * 89.99791 * 1 2 3 25 25 H 1.08997 * 109.47432 * 209.99900 * 1 2 3 26 26 H 1.08999 * 109.47689 * 330.00291 * 1 2 3 27 27 H 1.08007 * 119.88731 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.06452 * 179.97438 * 4 3 2 29 29 H 0.96998 * 119.99572 * 0.02562 * 8 6 5 30 30 H 1.08996 * 109.47253 * 300.00716 * 9 8 6 31 31 H 1.09002 * 109.46492 * 60.00030 * 9 8 6 32 32 H 0.97009 * 120.00184 * 0.02562 * 12 10 9 33 33 H 0.97003 * 119.99799 * 180.02562 * 16 15 13 34 34 H 1.08001 * 119.94351 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2011 0.0000 4 6 3.5742 1.2105 0.0005 5 6 4.2782 0.0043 0.0005 6 6 5.7550 0.0068 0.0005 7 8 6.3648 -1.0449 0.0001 8 7 6.4269 1.1753 0.0011 9 6 7.8919 1.1779 0.0016 10 6 8.3917 2.5995 0.0028 11 8 7.6019 3.5200 0.0035 12 7 9.7163 2.8481 0.0029 13 6 10.1711 4.1415 0.0045 14 1 9.4679 4.9612 0.0052 15 6 11.5368 4.3978 0.0041 16 7 12.3924 3.4005 0.0017 17 14 12.1563 6.1601 0.0055 18 1 11.6606 6.8579 1.2190 19 1 13.6413 6.1626 0.0055 20 1 11.6596 6.8604 -1.2060 21 6 3.5776 -1.2058 0.0005 22 9 4.2495 -2.3779 0.0011 23 6 2.1945 -1.1990 -0.0058 24 1 -0.3634 0.0000 -1.0278 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6511 2.1338 -0.0004 28 1 4.1089 2.1489 0.0001 29 1 5.9404 2.0144 0.0018 30 1 8.2558 0.6644 0.8915 31 1 8.2564 0.6649 -0.8884 32 1 10.3480 2.1119 0.0019 33 1 13.3458 3.5794 0.0018 34 1 1.6507 -2.1321 -0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344185801.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:49 Heat of formation + Delta-G solvation = -122.108499 kcal Electronic energy + Delta-G solvation = -20563.394349 eV Core-core repulsion = 16988.450197 eV Total energy + Delta-G solvation = -3574.944153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.95845 -41.33535 -40.20972 -39.42008 -36.30712 -35.45523 -33.90828 -33.37692 -31.67258 -29.84847 -28.12773 -26.37401 -23.90384 -23.47679 -21.58483 -21.44253 -20.16057 -19.33042 -17.93123 -17.78401 -17.36573 -17.04107 -16.59587 -16.52720 -16.52526 -16.01494 -15.45749 -15.43525 -15.27409 -14.59534 -14.43309 -14.33562 -13.95509 -13.68935 -13.55426 -13.11291 -12.91046 -12.76860 -12.66608 -12.48233 -12.30077 -12.14006 -11.57578 -11.19919 -10.59776 -10.38073 -10.12033 -10.02286 -9.71896 -8.52318 -6.03016 -0.40471 0.12291 1.37298 1.42448 1.53550 1.65488 1.87020 1.88075 2.29694 2.59346 3.06347 3.10936 3.14743 3.48421 3.63332 3.85685 4.11101 4.18777 4.19586 4.36240 4.36373 4.62557 4.63081 4.88970 4.93980 5.00719 5.11298 5.14058 5.28161 5.36775 5.43372 5.78788 5.89286 6.34861 6.45921 6.98943 7.01527 7.41161 7.90670 8.64405 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.035820 B = 0.003153 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.497260 B = 8878.263083 C = 9639.312136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.022 4.022 3 C -0.132 4.132 4 C -0.053 4.053 5 C -0.202 4.202 6 C 0.553 3.447 7 O -0.573 6.573 8 N -0.699 5.699 9 C 0.120 3.880 10 C 0.434 3.566 11 O -0.622 6.622 12 N -0.558 5.558 13 C -0.339 4.339 14 H 0.089 0.911 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.999 3.001 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.269 1.269 21 C 0.135 3.865 22 F -0.137 7.137 23 C -0.165 4.165 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.170 0.830 28 H 0.146 0.854 29 H 0.415 0.585 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.266 -5.583 -0.041 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.022 4.022 3 C -0.150 4.150 4 C -0.072 4.072 5 C -0.206 4.206 6 C 0.342 3.658 7 O -0.454 6.454 8 N -0.353 5.353 9 C -0.008 4.008 10 C 0.221 3.779 11 O -0.510 6.510 12 N -0.193 5.193 13 C -0.468 4.468 14 H 0.107 0.893 15 C -0.212 4.212 16 N -0.557 5.557 17 Si 0.821 3.179 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.194 1.194 21 C 0.114 3.886 22 F -0.116 7.116 23 C -0.184 4.184 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.187 0.813 28 H 0.164 0.836 29 H 0.255 0.745 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.058 -5.748 -0.041 22.795 hybrid contribution 1.354 0.298 -0.003 1.386 sum -20.704 -5.450 -0.044 21.410 Atomic orbital electron populations 1.21006 0.87172 1.04942 1.04297 1.20426 0.98559 0.91211 0.92016 1.21469 0.92740 0.99840 1.00967 1.21492 0.95685 0.95924 0.94052 1.19944 0.91942 0.94982 1.13685 1.18473 0.87984 0.83178 0.76177 1.90790 1.70600 1.32197 1.51861 1.45543 1.06376 1.09350 1.74052 1.20820 0.81350 0.94220 1.04388 1.20281 0.83100 0.90738 0.83819 1.90459 1.55455 1.46963 1.58120 1.41837 1.05411 1.08810 1.63217 1.19735 0.91923 0.84573 1.50549 0.89329 1.26167 0.95335 1.03997 0.95661 1.69680 1.03546 1.33336 1.49097 0.84905 0.77192 0.76576 0.79190 1.19365 1.19697 1.19360 1.18090 0.91036 0.79940 0.99490 1.91533 1.81179 1.45687 1.93166 1.21295 0.90120 1.01544 1.05435 0.88904 0.89836 0.89131 0.81290 0.83610 0.74539 0.88704 0.88694 0.76714 0.91021 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.00 71.24 0.71 0.04 16 2 C -0.02 -0.29 5.88 -19.82 -0.12 -0.41 16 3 C -0.13 -1.92 9.67 22.23 0.22 -1.70 16 4 C -0.05 -1.11 9.54 22.52 0.21 -0.90 16 5 C -0.20 -5.72 5.88 -20.05 -0.12 -5.83 16 6 C 0.55 19.68 7.77 86.74 0.67 20.35 16 7 O -0.57 -24.32 15.34 -3.94 -0.06 -24.38 16 8 N -0.70 -24.44 5.48 -469.87 -2.57 -27.02 16 9 C 0.12 4.56 6.15 85.63 0.53 5.09 16 10 C 0.43 20.16 7.85 87.66 0.69 20.85 16 11 O -0.62 -31.80 15.24 -3.08 -0.05 -31.85 16 12 N -0.56 -28.16 5.29 -306.99 -1.62 -29.78 16 13 C -0.34 -18.61 9.68 84.04 0.81 -17.80 16 14 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 15 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 16 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 17 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 C 0.13 3.63 7.29 22.67 0.17 3.80 16 22 F -0.14 -4.49 15.55 44.97 0.70 -3.79 16 23 C -0.17 -2.96 9.66 22.28 0.22 -2.74 16 24 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 25 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 26 H 0.09 0.29 8.08 -2.39 -0.02 0.27 16 27 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 28 H 0.15 2.85 6.41 -2.91 -0.02 2.83 16 29 H 0.41 13.66 5.47 -92.71 -0.51 13.15 16 30 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.40 19.45 7.90 -92.70 -0.73 18.72 16 33 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -70.69 307.65 3.09 -67.60 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.07 Total: 33.65 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 4.46 Total: 20.65 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.91 Total: -105.44 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -0.11 Total: -56.22 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.70 Total: -3.79 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -70.69 3.09 -67.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344185801.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.512 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds