Wall clock time and date at job start Tue Mar 31 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00315 * 2 1 4 4 N 1.46492 * 109.47397 * 125.00292 * 3 2 1 5 5 C 1.46506 * 119.99800 * 269.99750 * 4 3 2 6 6 C 1.50699 * 109.47352 * 269.99857 * 5 4 3 7 7 H 1.08000 * 119.99828 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00146 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47025 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46976 * 120.00048 * 10 8 6 13 13 H 1.48503 * 109.46927 * 239.99950 * 10 8 6 14 14 C 1.34773 * 120.00231 * 90.00207 * 4 3 2 15 15 O 1.21283 * 120.00360 * 179.72577 * 14 4 3 16 16 C 1.50706 * 120.00081 * 359.97438 * 14 4 3 17 17 C 1.52998 * 109.47348 * 179.72561 * 16 14 4 18 18 C 1.50696 * 109.46969 * 179.97438 * 17 16 14 19 19 C 1.33643 * 126.03266 * 89.72002 * 18 17 16 20 20 N 1.31784 * 114.49752 * 179.78465 * 19 18 17 21 21 C 1.29025 * 117.12680 * 0.52316 * 20 19 18 22 22 S 1.70981 * 110.16692 * 359.71084 * 21 20 19 23 23 H 1.08004 * 119.99706 * 359.97438 * 1 2 3 24 24 H 1.07993 * 120.00495 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.00090 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47260 * 4.99602 * 3 2 1 27 27 H 1.09006 * 109.47035 * 245.00356 * 3 2 1 28 28 H 1.08995 * 109.47161 * 30.00561 * 5 4 3 29 29 H 1.09002 * 109.46900 * 149.99872 * 5 4 3 30 30 H 0.97007 * 120.00044 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46564 * 299.73030 * 16 14 4 32 32 H 1.08998 * 109.47012 * 59.72084 * 16 14 4 33 33 H 1.09000 * 109.46986 * 300.00089 * 17 16 14 34 34 H 1.09002 * 109.46857 * 60.00224 * 17 16 14 35 35 H 1.07997 * 122.74888 * 359.97240 * 19 18 17 36 36 H 1.07997 * 124.92217 * 179.67516 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1313 5 6 2.5590 1.8650 2.4248 6 6 2.8444 3.3436 2.4803 7 1 3.3035 3.8370 1.6364 8 6 2.5187 4.0668 3.6080 9 7 1.9592 3.4660 4.6355 10 14 2.8719 5.8998 3.6766 11 1 3.5009 6.3307 2.4023 12 1 1.6012 6.6415 3.8777 13 1 3.7949 6.1841 4.8047 14 6 4.2497 0.8661 0.9822 15 8 5.0215 0.8929 1.9175 16 6 4.6969 0.3173 -0.3482 17 6 6.1554 -0.1344 -0.2494 18 6 6.6023 -0.6838 -1.5795 19 6 7.1563 0.0170 -2.5735 20 7 7.4651 -0.6953 -3.6384 21 6 7.1929 -1.9560 -3.6020 22 16 6.4798 -2.3621 -2.1020 23 1 -0.5400 0.9354 0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3587 2.1316 0.0895 27 1 2.6213 1.4025 -0.9315 28 1 1.4889 1.6967 2.5459 29 1 3.0991 1.3603 3.2259 30 1 1.7297 3.9748 5.4289 31 1 4.0708 -0.5327 -0.6194 32 1 4.6073 1.0921 -1.1095 33 1 6.7814 0.7156 0.0220 34 1 6.2449 -0.9093 0.5120 35 1 7.3390 1.0794 -2.5081 36 1 7.3867 -2.6537 -4.4033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359428885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:30 Heat of formation + Delta-G solvation = 2.910780 kcal Electronic energy + Delta-G solvation = -19033.593348 eV Core-core repulsion = 16030.283615 eV Total energy + Delta-G solvation = -3003.309734 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91215 -40.41325 -37.27291 -35.40300 -34.87216 -33.65645 -30.82018 -29.29963 -27.06255 -26.71723 -25.11334 -23.58455 -21.18155 -20.89507 -19.85545 -19.03096 -18.61877 -17.80720 -17.26752 -16.72846 -16.24781 -16.16220 -15.59629 -15.30881 -14.98164 -14.74566 -14.46222 -14.16237 -13.90090 -13.64685 -13.29753 -13.08139 -12.94567 -12.85940 -12.60814 -12.58493 -12.24398 -12.17973 -11.83719 -11.64577 -10.69326 -10.65163 -10.56476 -10.30778 -10.15760 -9.84582 -9.46011 -8.22363 -6.37039 -0.21793 0.44664 0.84241 1.33680 1.36668 1.38827 1.50584 1.83286 1.88428 2.34849 2.51496 3.07507 3.45556 3.64537 3.95646 4.02801 4.06521 4.20217 4.29465 4.42203 4.43515 4.51988 4.63279 4.86153 4.99120 5.03069 5.07012 5.08864 5.23411 5.24016 5.52926 5.71929 5.77009 5.96725 6.06756 6.69891 6.76725 6.78920 7.28507 7.47694 8.85007 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.004080 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.705133 B = 6860.627745 C = 7625.870016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.599 5.599 5 C 0.264 3.736 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.282 1.282 14 C 0.497 3.503 15 O -0.595 6.595 16 C -0.118 4.118 17 C -0.021 4.021 18 C -0.219 4.219 19 C 0.022 3.978 20 N -0.501 5.501 21 C 0.018 3.982 22 S 0.149 5.851 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.019 0.981 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.180 0.820 36 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -11.908 -17.798 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.202 4.202 3 C 0.010 3.990 4 N -0.329 5.329 5 C 0.142 3.858 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.208 1.208 14 C 0.286 3.714 15 O -0.476 6.476 16 C -0.158 4.158 17 C -0.061 4.061 18 C -0.340 4.340 19 C -0.128 4.128 20 N -0.215 5.215 21 C -0.279 4.279 22 S 0.401 5.599 23 H 0.115 0.885 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.093 0.907 27 H 0.125 0.875 28 H 0.037 0.963 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.197 0.803 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.828 -12.577 -17.239 21.680 hybrid contribution 0.199 1.880 0.753 2.035 sum 4.027 -10.697 -16.486 20.061 Atomic orbital electron populations 1.24046 0.95624 1.02818 0.98433 1.23343 0.96775 0.98352 1.01768 1.20828 0.92729 0.96291 0.89117 1.48224 1.11901 1.59739 1.13017 1.18686 0.93779 0.92718 0.80595 1.21750 1.40437 0.94462 1.01384 0.92725 1.25850 0.94676 1.03711 0.94882 1.70065 1.42917 1.38036 1.05827 0.85378 0.78185 0.79100 0.78205 1.19023 1.19491 1.20810 1.21313 0.81405 0.77590 0.91074 1.90647 1.53795 1.58638 1.44546 1.21686 0.97080 1.03305 0.93710 1.19615 0.94836 1.01141 0.90527 1.25925 1.09164 0.96946 1.01991 1.21964 1.00599 1.02184 0.88064 1.66378 1.20759 1.06281 1.28068 1.28953 1.01191 0.95651 1.02144 1.84013 1.56689 1.07632 1.11550 0.88483 0.86531 0.86543 0.90675 0.87512 0.96261 0.98516 0.92446 0.86893 0.86978 0.90061 0.90705 0.80266 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 14.32 67.78 0.97 -3.04 16 2 C -0.18 -4.74 9.75 25.65 0.25 -4.49 16 3 C 0.13 4.04 5.65 85.63 0.48 4.53 16 4 N -0.60 -24.95 2.44 -830.51 -2.03 -26.98 16 5 C 0.26 14.23 5.16 85.63 0.44 14.67 16 6 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.44 5.46 84.65 0.46 0.91 16 9 N -0.93 -56.33 13.29 21.44 0.28 -56.05 16 10 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.50 19.90 7.67 87.66 0.67 20.58 16 15 O -0.59 -29.97 15.56 -3.04 -0.05 -30.02 16 16 C -0.12 -3.08 4.24 29.85 0.13 -2.95 16 17 C -0.02 -0.53 5.04 29.85 0.15 -0.38 16 18 C -0.22 -4.64 5.85 24.64 0.14 -4.49 16 19 C 0.02 0.48 11.25 83.66 0.94 1.43 16 20 N -0.50 -10.86 10.54 -203.74 -2.15 -13.01 16 21 C 0.02 0.27 12.23 130.65 1.60 1.87 16 22 S 0.15 2.41 23.22 -56.49 -1.31 1.09 16 23 H 0.10 2.30 7.84 -2.91 -0.02 2.27 16 24 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 25 H 0.12 2.71 7.83 -2.91 -0.02 2.69 16 26 H 0.07 2.46 7.72 -2.39 -0.02 2.44 16 27 H 0.11 2.53 6.43 -2.38 -0.02 2.51 16 28 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 29 H 0.00 -0.20 7.43 -2.39 -0.02 -0.22 16 30 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 31 H 0.11 2.40 7.80 -2.39 -0.02 2.38 16 32 H 0.11 2.51 7.39 -2.39 -0.02 2.49 16 33 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.07 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.18 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.23 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.64 328.92 4.32 -70.32 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.07 Total: 10.03 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 6.48 Total: -2.33 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -3.89 Total: -96.04 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.05 Total: -30.02 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.09 kcal Total: -74.64 4.32 -70.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359428885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.228 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds