Wall clock time and date at job start Tue Mar 31 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47024 * 357.36822 * 3 2 1 5 5 C 1.36655 * 119.99448 * 269.99632 * 4 3 2 6 6 H 1.07996 * 120.00476 * 21.91147 * 5 4 3 7 7 C 1.39195 * 119.99539 * 201.91095 * 5 4 3 8 8 N 1.31269 * 120.00196 * 11.00618 * 7 5 4 9 9 Si 1.86803 * 119.99667 * 191.00791 * 7 5 4 10 10 H 1.48496 * 109.46989 * 64.99975 * 9 7 5 11 11 H 1.48504 * 109.47101 * 184.99845 * 9 7 5 12 12 H 1.48494 * 109.47061 * 304.99531 * 9 7 5 13 13 C 1.34773 * 120.00175 * 90.00211 * 4 3 2 14 14 O 1.21616 * 119.99485 * 242.64183 * 13 4 3 15 15 C 1.47679 * 120.00290 * 62.64466 * 13 4 3 16 16 C 1.39054 * 121.12229 * 25.41271 * 15 13 4 17 17 C 1.39163 * 119.57234 * 180.02562 * 16 15 13 18 18 N 1.31059 * 121.89199 * 359.97438 * 17 16 15 19 19 C 1.33553 * 121.85529 * 0.02562 * 18 17 16 20 20 C 1.40699 * 120.96928 * 179.97438 * 19 18 17 21 21 C 1.36087 * 119.74585 * 180.02562 * 20 19 18 22 22 C 1.39326 * 121.04413 * 359.78331 * 21 20 19 23 23 C 1.36285 * 120.83041 * 0.45412 * 22 21 20 24 24 C 1.40052 * 119.64518 * 359.53723 * 23 22 21 25 25 H 4.40643 * 5.51428 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47220 * 237.36382 * 3 2 1 27 27 H 1.09003 * 109.46894 * 117.36525 * 3 2 1 28 28 H 0.97002 * 119.99927 * 184.79948 * 8 7 5 29 29 H 1.08005 * 120.21481 * 0.04552 * 16 15 13 30 30 H 1.07992 * 119.05771 * 179.97438 * 17 16 15 31 31 H 1.08008 * 120.12893 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.47773 * 179.97438 * 21 20 19 33 33 H 1.07999 * 119.58576 * 180.23971 * 22 21 20 34 34 H 1.08005 * 120.17925 * 179.81022 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3789 0.0634 5 6 3.3630 -1.9678 1.2753 6 1 2.8734 -1.5894 2.1603 7 6 4.2265 -3.0556 1.3689 8 7 4.9846 -3.3816 0.3480 9 14 4.3063 -4.0515 2.9473 10 1 3.0034 -4.7273 3.1725 11 1 5.3800 -5.0713 2.8353 12 1 4.5991 -3.1477 4.0885 13 6 3.3600 -2.0671 -1.0733 14 8 2.7195 -3.0730 -1.3119 15 6 4.3842 -1.5997 -2.0291 16 6 5.4583 -0.8231 -1.6088 17 6 6.4046 -0.3998 -2.5372 18 7 6.3167 -0.7120 -3.8070 19 6 5.3134 -1.4541 -4.2826 20 6 5.2371 -1.7778 -5.6497 21 6 4.2034 -2.5352 -6.1076 22 6 3.2164 -3.0023 -5.2422 23 6 3.2552 -2.7046 -3.9128 24 6 4.3050 -1.9276 -3.4073 25 1 -1.0498 -0.0004 0.0002 26 1 3.0092 0.5550 0.8654 27 1 3.0092 0.4732 -0.9127 28 1 5.5345 -4.1797 0.3876 29 1 5.5578 -0.5505 -0.5684 30 1 7.2353 0.2033 -2.2017 31 1 5.9956 -1.4257 -6.3333 32 1 4.1489 -2.7808 -7.1579 33 1 2.4086 -3.6049 -5.6303 34 1 2.4829 -3.0697 -3.2519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381654429.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:30 Heat of formation + Delta-G solvation = 102.700227 kcal Electronic energy + Delta-G solvation = -21204.915416 eV Core-core repulsion = 18070.488926 eV Total energy + Delta-G solvation = -3134.426490 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39696 -38.40935 -36.55089 -35.06105 -32.84792 -32.64035 -31.21428 -30.02701 -29.48603 -26.61196 -25.37141 -23.65162 -22.99063 -21.99299 -19.88949 -17.92910 -17.88216 -17.01835 -16.73428 -15.92336 -15.35060 -14.59108 -14.56920 -14.13688 -13.87281 -13.80024 -13.69970 -13.37880 -12.96057 -12.71411 -12.50319 -11.82177 -11.49835 -11.33915 -11.17834 -11.05574 -10.86537 -10.64954 -10.41470 -10.00721 -9.73001 -9.65438 -9.36676 -9.25480 -8.46211 -8.29018 -7.71887 -7.66866 -6.35573 -3.81572 0.75415 1.33307 2.30725 3.18164 3.19314 3.27499 3.31646 3.37222 3.38912 3.85974 4.22614 4.65882 4.68639 4.74604 4.93308 5.16431 5.20476 5.29840 5.38125 5.58474 5.61536 5.68057 5.85109 5.95533 6.11156 6.16892 6.28674 6.45908 6.52289 6.56849 6.58147 6.81909 6.98968 7.08655 7.32877 7.40250 7.90409 8.17084 8.36711 8.78824 9.05156 9.27436 9.75566 10.76864 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.006825 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.497032 B = 4101.651538 C = 4602.991320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.178 4.178 3 C 0.228 3.772 4 N -0.534 5.534 5 C -0.292 4.292 6 H 0.087 0.913 7 C 0.028 3.972 8 N -0.879 5.879 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.617 3.383 14 O -0.511 6.511 15 C -0.027 4.027 16 C -0.123 4.123 17 C 0.124 3.876 18 N -0.486 5.486 19 C 0.121 3.879 20 C -0.106 4.106 21 C -0.105 4.105 22 C -0.138 4.138 23 C -0.081 4.081 24 C -0.080 4.080 25 H 0.209 0.791 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.274 0.726 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 5.983 -6.325 8.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.180 4.180 3 C 0.104 3.896 4 N -0.260 5.260 5 C -0.418 4.418 6 H 0.104 0.896 7 C -0.176 4.176 8 N -0.519 5.519 9 Si 0.753 3.247 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.409 3.591 14 O -0.386 6.386 15 C -0.039 4.039 16 C -0.143 4.143 17 C -0.047 4.047 18 N -0.196 5.196 19 C -0.001 4.001 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.156 4.156 23 C -0.099 4.099 24 C -0.083 4.083 25 H 0.226 0.774 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.029 5.542 -7.125 9.026 hybrid contribution -0.554 -1.052 1.477 1.896 sum -0.582 4.490 -5.648 7.238 Atomic orbital electron populations 1.24727 0.95765 1.01301 1.02991 1.24437 0.95689 0.99185 0.98654 1.18073 0.83090 0.86351 1.02119 1.42386 1.69308 1.09705 1.04644 1.19267 1.22381 1.15517 0.84661 0.89556 1.25174 0.94202 0.99303 0.98903 1.69217 1.25742 1.25034 1.31929 0.86001 0.77842 0.79570 0.81272 1.20299 1.21077 1.20010 1.17142 0.80326 0.82441 0.79193 1.90440 1.46606 1.28116 1.73448 1.21049 0.97200 0.93445 0.92239 1.22353 0.93966 0.96517 1.01497 1.22828 0.97368 0.96204 0.88297 1.67750 1.22459 1.13056 1.16320 1.18789 0.91081 0.96137 0.94048 1.20661 0.99001 0.99659 0.93138 1.20806 0.94466 0.97660 0.99603 1.20903 0.99516 1.01552 0.93675 1.21679 0.97829 0.94671 0.95754 1.18868 0.96588 0.99537 0.93274 0.77363 0.88926 0.90676 0.91442 0.83642 0.82791 0.85389 0.86032 0.86121 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.96 19.25 29.55 0.57 -3.39 16 2 C -0.18 -3.44 13.67 -37.12 -0.51 -3.94 16 3 C 0.23 4.37 5.89 -6.83 -0.04 4.33 16 4 N -0.53 -12.68 2.06 -119.09 -0.24 -12.92 16 5 C -0.29 -7.43 9.60 -15.05 -0.14 -7.57 16 6 H 0.09 2.11 7.86 -52.49 -0.41 1.70 16 7 C 0.03 0.72 5.22 -17.44 -0.09 0.63 16 8 N -0.88 -23.87 10.99 55.51 0.61 -23.26 16 9 Si 0.93 20.74 29.57 -169.99 -5.03 15.71 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.62 15.41 3.67 -12.41 -0.05 15.37 16 14 O -0.51 -14.27 14.55 5.26 0.08 -14.19 16 15 C -0.03 -0.59 5.11 -104.34 -0.53 -1.13 16 16 C -0.12 -2.41 9.36 -38.94 -0.36 -2.77 16 17 C 0.12 2.14 11.14 -17.54 -0.20 1.95 16 18 N -0.49 -9.07 10.30 -11.03 -0.11 -9.18 16 19 C 0.12 2.34 6.61 -84.88 -0.56 1.78 16 20 C -0.11 -1.71 9.98 -39.43 -0.39 -2.10 16 21 C -0.11 -1.53 9.94 -39.95 -0.40 -1.93 16 22 C -0.14 -2.23 9.96 -39.88 -0.40 -2.63 16 23 C -0.08 -1.61 9.18 -39.61 -0.36 -1.98 16 24 C -0.08 -1.68 5.76 -106.51 -0.61 -2.30 16 25 H 0.21 2.72 7.80 -54.10 -0.42 2.30 16 26 H 0.09 1.57 8.04 -51.93 -0.42 1.16 16 27 H 0.08 1.30 7.50 -51.93 -0.39 0.91 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.15 2.85 7.86 -52.48 -0.41 2.44 16 30 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 31 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.15 3.30 5.44 -52.48 -0.29 3.02 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -31.45 308.18 -7.30 -38.75 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.17 Total: 6.14 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -4.08 Total: -5.69 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.25 Total: -45.36 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.08 Total: -14.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.45 -7.30 -38.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381654429.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.449 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds