Wall clock time and date at job start Tue Mar 31 2020 02:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47024 * 357.36822 * 3 2 1 5 5 C 1.36655 * 119.99448 * 269.99632 * 4 3 2 6 6 H 1.07996 * 120.00476 * 21.91147 * 5 4 3 7 7 C 1.39195 * 119.99539 * 201.91095 * 5 4 3 8 8 N 1.31269 * 120.00196 * 11.00618 * 7 5 4 9 9 Si 1.86803 * 119.99667 * 191.00791 * 7 5 4 10 10 H 1.48496 * 109.46989 * 64.99975 * 9 7 5 11 11 H 1.48504 * 109.47101 * 184.99845 * 9 7 5 12 12 H 1.48494 * 109.47061 * 304.99531 * 9 7 5 13 13 C 1.34773 * 120.00175 * 90.00211 * 4 3 2 14 14 O 1.21616 * 119.99485 * 242.64183 * 13 4 3 15 15 C 1.47679 * 120.00290 * 62.64466 * 13 4 3 16 16 C 1.39054 * 121.12229 * 25.41271 * 15 13 4 17 17 C 1.39163 * 119.57234 * 180.02562 * 16 15 13 18 18 N 1.31059 * 121.89199 * 359.97438 * 17 16 15 19 19 C 1.33553 * 121.85529 * 0.02562 * 18 17 16 20 20 C 1.40699 * 120.96928 * 179.97438 * 19 18 17 21 21 C 1.36087 * 119.74585 * 180.02562 * 20 19 18 22 22 C 1.39326 * 121.04413 * 359.78331 * 21 20 19 23 23 C 1.36285 * 120.83041 * 0.45412 * 22 21 20 24 24 C 1.40052 * 119.64518 * 359.53723 * 23 22 21 25 25 H 4.40643 * 5.51428 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47220 * 237.36382 * 3 2 1 27 27 H 1.09003 * 109.46894 * 117.36525 * 3 2 1 28 28 H 0.97002 * 119.99927 * 184.79948 * 8 7 5 29 29 H 1.08005 * 120.21481 * 0.04552 * 16 15 13 30 30 H 1.07992 * 119.05771 * 179.97438 * 17 16 15 31 31 H 1.08008 * 120.12893 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.47773 * 179.97438 * 21 20 19 33 33 H 1.07999 * 119.58576 * 180.23971 * 22 21 20 34 34 H 1.08005 * 120.17925 * 179.81022 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3789 0.0634 5 6 3.3630 -1.9678 1.2753 6 1 2.8734 -1.5894 2.1603 7 6 4.2265 -3.0556 1.3689 8 7 4.9846 -3.3816 0.3480 9 14 4.3063 -4.0515 2.9473 10 1 3.0034 -4.7273 3.1725 11 1 5.3800 -5.0713 2.8353 12 1 4.5991 -3.1477 4.0885 13 6 3.3600 -2.0671 -1.0733 14 8 2.7195 -3.0730 -1.3119 15 6 4.3842 -1.5997 -2.0291 16 6 5.4583 -0.8231 -1.6088 17 6 6.4046 -0.3998 -2.5372 18 7 6.3167 -0.7120 -3.8070 19 6 5.3134 -1.4541 -4.2826 20 6 5.2371 -1.7778 -5.6497 21 6 4.2034 -2.5352 -6.1076 22 6 3.2164 -3.0023 -5.2422 23 6 3.2552 -2.7046 -3.9128 24 6 4.3050 -1.9276 -3.4073 25 1 -1.0498 -0.0004 0.0002 26 1 3.0092 0.5550 0.8654 27 1 3.0092 0.4732 -0.9127 28 1 5.5345 -4.1797 0.3876 29 1 5.5578 -0.5505 -0.5684 30 1 7.2353 0.2033 -2.2017 31 1 5.9956 -1.4257 -6.3333 32 1 4.1489 -2.7808 -7.1579 33 1 2.4086 -3.6049 -5.6303 34 1 2.4829 -3.0697 -3.2519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381654429.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:29 Heat of formation + Delta-G solvation = 84.645026 kcal Electronic energy + Delta-G solvation = -21205.698349 eV Core-core repulsion = 18070.488926 eV Total energy + Delta-G solvation = -3135.209422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88550 -40.14582 -37.92947 -36.83223 -34.55980 -34.16959 -32.91020 -31.41330 -30.88694 -28.27637 -27.11241 -25.21330 -24.39049 -23.51168 -21.58727 -19.53478 -19.31036 -18.56364 -18.17809 -17.51202 -17.14809 -16.34262 -16.08894 -15.79831 -15.37445 -15.27608 -15.15186 -14.74123 -14.48927 -14.20837 -13.98306 -13.62717 -13.30205 -12.87269 -12.72490 -12.68285 -12.41628 -12.18573 -12.17937 -11.54698 -11.28469 -11.24861 -11.01512 -10.94078 -10.19995 -9.67134 -9.53347 -9.14592 -8.30027 -5.79634 -0.70653 -0.06494 0.81736 1.39251 1.44446 1.50001 1.72408 1.91040 1.94869 2.19225 2.43704 3.04055 3.13090 3.24304 3.41883 3.65591 3.83449 3.92102 4.03395 4.08683 4.29798 4.33843 4.46674 4.56702 4.65690 4.70469 4.84595 5.11683 5.12055 5.16484 5.24897 5.39582 5.46551 5.58707 5.65946 5.97150 6.00370 6.73811 6.86110 6.91796 7.18140 7.44615 7.86978 8.80106 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.006825 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.497032 B = 4101.651538 C = 4602.991320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.233 4.233 3 C 0.228 3.772 4 N -0.548 5.548 5 C -0.302 4.302 6 H 0.091 0.909 7 C -0.021 4.021 8 N -0.906 5.906 9 Si 0.984 3.016 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.254 1.254 13 C 0.619 3.381 14 O -0.559 6.559 15 C -0.060 4.060 16 C -0.116 4.116 17 C 0.126 3.874 18 N -0.482 5.482 19 C 0.101 3.899 20 C -0.104 4.104 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.101 4.101 25 H 0.249 0.751 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.265 0.735 29 H 0.140 0.860 30 H 0.198 0.802 31 H 0.158 0.842 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 6.873 -8.010 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.235 4.235 3 C 0.105 3.895 4 N -0.275 5.275 5 C -0.429 4.429 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.548 5.548 9 Si 0.810 3.190 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.178 1.178 13 C 0.413 3.587 14 O -0.437 6.437 15 C -0.072 4.072 16 C -0.136 4.136 17 C -0.045 4.045 18 N -0.191 5.191 19 C -0.021 4.021 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.104 4.104 25 H 0.265 0.735 26 H 0.128 0.872 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.215 0.785 31 H 0.175 0.825 32 H 0.190 0.810 33 H 0.168 0.832 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.316 6.480 -8.804 10.936 hybrid contribution -0.770 -1.284 1.851 2.380 sum -0.454 5.197 -6.953 8.692 Atomic orbital electron populations 1.25690 0.96745 0.98788 1.00816 1.24705 0.96482 1.01477 1.00787 1.18207 0.83441 0.84357 1.03487 1.42556 1.69658 1.11407 1.03923 1.19540 1.22016 1.15859 0.85516 0.89152 1.25970 0.94252 1.00308 1.01577 1.69373 1.26720 1.25105 1.33556 0.85099 0.76887 0.78235 0.78828 1.21290 1.21537 1.17819 1.17666 0.79811 0.81580 0.79647 1.90399 1.48350 1.30083 1.74867 1.20930 0.97651 0.95893 0.92767 1.22419 0.93746 0.95753 1.01729 1.23381 0.97658 0.95956 0.87506 1.67855 1.22004 1.12634 1.16643 1.19227 0.90851 0.96653 0.95366 1.21091 1.00036 0.99144 0.91975 1.21303 0.92614 0.95688 1.01599 1.21317 1.00244 0.99793 0.92154 1.21540 0.97992 0.97245 0.97361 1.19084 0.97777 1.00351 0.93168 0.73502 0.87188 0.89562 0.92490 0.84190 0.78540 0.82472 0.81036 0.83154 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.79 19.25 74.32 1.43 -5.36 16 2 C -0.23 -9.10 13.67 31.12 0.43 -8.67 16 3 C 0.23 9.01 5.89 84.57 0.50 9.50 16 4 N -0.55 -27.12 2.06 -648.93 -1.33 -28.45 16 5 C -0.30 -15.89 9.60 84.17 0.81 -15.08 16 6 H 0.09 4.52 7.86 -2.91 -0.02 4.50 16 7 C -0.02 -1.15 5.22 85.01 0.44 -0.70 16 8 N -0.91 -51.31 10.99 21.70 0.24 -51.07 16 9 Si 0.98 43.62 29.57 68.60 2.03 45.65 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 13 C 0.62 32.58 3.67 86.74 0.32 32.90 16 14 O -0.56 -33.31 14.55 -4.08 -0.06 -33.36 16 15 C -0.06 -2.79 5.11 -19.68 -0.10 -2.89 16 16 C -0.12 -4.64 9.36 22.69 0.21 -4.42 16 17 C 0.13 4.22 11.14 85.03 0.95 5.17 16 18 N -0.48 -17.19 10.30 -188.80 -1.94 -19.13 16 19 C 0.10 3.76 6.61 40.33 0.27 4.03 16 20 C -0.10 -3.02 9.98 22.37 0.22 -2.80 16 21 C -0.09 -2.32 9.94 22.03 0.22 -2.10 16 22 C -0.12 -3.56 9.96 22.08 0.22 -3.34 16 23 C -0.12 -5.04 9.18 22.25 0.20 -4.83 16 24 C -0.10 -4.37 5.76 -21.09 -0.12 -4.49 16 25 H 0.25 5.79 7.80 -4.43 -0.03 5.76 16 26 H 0.11 3.81 8.04 -2.39 -0.02 3.79 16 27 H 0.09 3.11 7.50 -2.39 -0.02 3.10 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.14 5.66 7.86 -2.91 -0.02 5.64 16 30 H 0.20 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.12 5.65 5.44 -2.91 -0.02 5.64 16 Total: -1.00 -72.57 308.18 6.05 -66.52 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.12 Total: 22.95 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 6.00 Total: -3.09 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.04 Total: -98.65 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.06 Total: -33.36 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.57 6.05 -66.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381654429.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.163 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds