Wall clock time and date at job start Tue Mar 31 2020 02:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46843 * 95.07139 * 3 2 1 5 5 C 1.36690 * 119.99872 * 264.40422 * 4 3 2 6 6 H 1.08000 * 119.99954 * 131.94586 * 5 4 3 7 7 C 1.39171 * 120.00278 * 311.94337 * 5 4 3 8 8 N 1.31283 * 119.99861 * 3.20364 * 7 5 4 9 9 Si 1.86796 * 120.00344 * 183.19750 * 7 5 4 10 10 H 1.48501 * 109.46689 * 60.00002 * 9 7 5 11 11 H 1.48494 * 109.47531 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47254 * 300.00561 * 9 7 5 13 13 C 1.34776 * 119.99862 * 84.41005 * 4 3 2 14 14 O 1.21563 * 120.00281 * 4.83635 * 13 4 3 15 15 C 1.48067 * 119.99501 * 184.84059 * 13 4 3 16 16 C 1.40383 * 119.24684 * 174.22437 * 15 13 4 17 17 C 1.36444 * 119.81200 * 179.78156 * 16 15 13 18 18 C 1.40819 * 118.26153 * 0.45503 * 17 16 15 19 19 C 1.40381 * 121.26112 * 179.82332 * 18 17 16 20 20 C 1.36164 * 119.65549 * 179.74134 * 19 18 17 21 21 C 1.39418 * 120.90916 * 0.02562 * 20 19 18 22 22 C 1.36007 * 121.07726 * 359.97438 * 21 20 19 23 23 C 1.40823 * 119.74017 * 0.02562 * 22 21 20 24 24 N 1.31984 * 119.25548 * 354.24088 * 15 13 4 25 25 H 4.40637 * 5.51469 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47348 * 335.06965 * 3 2 1 27 27 H 1.09001 * 109.46778 * 215.06755 * 3 2 1 28 28 H 0.96999 * 120.00169 * 179.97438 * 8 7 5 29 29 H 1.07995 * 120.09600 * 0.04070 * 16 15 13 30 30 H 1.07999 * 120.86996 * 180.02562 * 17 16 15 31 31 H 1.08002 * 120.17547 * 359.74051 * 19 18 17 32 32 H 1.07999 * 119.54425 * 180.02562 * 20 19 18 33 33 H 1.08002 * 119.45917 * 179.97438 * 21 20 19 34 34 H 1.07999 * 120.13012 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.1230 -1.3759 5 6 3.4714 -0.9968 -2.0835 6 1 3.1034 -1.1307 -3.0900 7 6 4.2889 -1.9645 -1.5071 8 7 4.6849 -1.8325 -0.2624 9 14 4.8226 -3.4511 -2.5043 10 1 5.5859 -2.9999 -3.6955 11 1 5.6821 -4.3261 -1.6673 12 1 3.6235 -4.2094 -2.9429 13 6 3.2511 1.3397 -1.9438 14 8 3.0360 2.3400 -1.2875 15 6 3.6415 1.4578 -3.3672 16 6 3.6401 2.7227 -3.9761 17 6 4.0021 2.8454 -5.2859 18 6 4.3596 1.6800 -5.9908 19 6 4.7387 1.7330 -7.3414 20 6 5.0832 0.5864 -7.9901 21 6 5.0644 -0.6423 -7.3314 22 6 4.7026 -0.7322 -6.0235 23 6 4.3394 0.4309 -5.3175 24 7 3.9825 0.3715 -4.0347 25 1 -1.0500 0.0002 0.0000 26 1 3.0099 -0.9311 0.4332 27 1 3.0090 0.8420 0.5905 28 1 5.2543 -2.5071 0.1395 29 1 3.3574 3.5967 -3.4083 30 1 4.0076 3.8102 -5.7712 31 1 4.7571 2.6783 -7.8634 32 1 5.3750 0.6293 -9.0290 33 1 5.3417 -1.5372 -7.8687 34 1 4.6938 -1.6919 -5.5282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381662099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:19 Heat of formation + Delta-G solvation = 99.609023 kcal Electronic energy + Delta-G solvation = -20926.853057 eV Core-core repulsion = 17792.292523 eV Total energy + Delta-G solvation = -3134.560535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45726 -38.59657 -36.40665 -35.12158 -33.14959 -32.44893 -31.30623 -30.18524 -29.65277 -26.75855 -25.14258 -23.85635 -23.04612 -21.74656 -19.93743 -18.39056 -17.51216 -17.31278 -16.84189 -15.74991 -15.18070 -14.80229 -14.47702 -14.25189 -14.10815 -13.93516 -13.63888 -13.22758 -12.79004 -12.63895 -12.50071 -11.96727 -11.53099 -11.46265 -11.20651 -11.18384 -11.07440 -10.82792 -10.44187 -10.18904 -9.72925 -9.42285 -9.10032 -9.02153 -8.40733 -8.34177 -7.95415 -7.49973 -6.38351 -4.09387 0.66170 1.08124 2.34479 2.96388 3.18942 3.21062 3.22692 3.47620 3.72564 3.97618 4.16106 4.51084 4.70781 4.77139 4.88521 4.98641 5.06646 5.17489 5.33782 5.39029 5.46423 5.60422 5.71959 5.94032 6.09143 6.28865 6.33167 6.42676 6.60631 6.62962 6.71567 6.78248 6.86912 7.12328 7.16455 7.59348 7.86362 8.37247 8.45973 8.53168 9.03753 9.31936 9.76827 10.63901 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.007537 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.552330 B = 3714.156683 C = 5085.836632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.153 4.153 3 C 0.199 3.801 4 N -0.406 5.406 5 C -0.291 4.291 6 H 0.116 0.884 7 C 0.040 3.960 8 N -0.876 5.876 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.511 3.489 14 O -0.595 6.595 15 C 0.139 3.861 16 C -0.124 4.124 17 C -0.084 4.084 18 C -0.101 4.101 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.080 4.080 23 C 0.114 3.886 24 N -0.395 5.395 25 H 0.207 0.793 26 H 0.143 0.857 27 H 0.082 0.918 28 H 0.273 0.727 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 2.326 -11.240 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.154 4.154 3 C 0.077 3.923 4 N -0.121 5.121 5 C -0.421 4.421 6 H 0.133 0.867 7 C -0.164 4.164 8 N -0.514 5.514 9 Si 0.751 3.249 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.300 3.700 14 O -0.481 6.481 15 C -0.014 4.014 16 C -0.144 4.144 17 C -0.109 4.109 18 C -0.104 4.104 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.138 4.138 22 C -0.098 4.098 23 C -0.009 4.009 24 N -0.106 5.106 25 H 0.224 0.776 26 H 0.160 0.840 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.285 1.818 -10.374 10.536 hybrid contribution 0.168 0.002 -0.869 0.885 sum 0.454 1.820 -11.243 11.398 Atomic orbital electron populations 1.24591 0.95621 1.05329 1.02079 1.24371 0.95459 0.96902 0.98644 1.18846 0.81391 1.05860 0.86191 1.43320 1.52253 1.05017 1.11540 1.20050 1.26510 0.96207 0.99340 0.86730 1.25608 0.95288 0.99760 0.95780 1.69556 1.33796 1.35811 1.12194 0.86043 0.78901 0.80173 0.79832 1.19170 1.21075 1.19733 1.18143 0.82226 0.84028 0.85645 1.90637 1.57398 1.36808 1.63237 1.21540 0.95797 0.88809 0.95256 1.21802 0.98709 0.98853 0.95085 1.21263 0.97959 0.97562 0.94159 1.18989 1.01671 0.94503 0.95189 1.20896 0.99572 0.98601 0.93103 1.20825 1.00666 0.92656 0.99841 1.20806 1.00533 0.97826 0.94639 1.20977 0.97269 0.97806 0.93792 1.19367 0.97910 0.92300 0.91288 1.69264 1.07262 1.29375 1.04703 0.77567 0.83981 0.89987 0.91652 0.83979 0.84711 0.85872 0.86170 0.85831 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.18 19.25 29.55 0.57 -4.61 16 2 C -0.15 -3.53 13.62 -37.12 -0.51 -4.03 16 3 C 0.20 4.91 5.36 -6.83 -0.04 4.87 16 4 N -0.41 -10.55 2.47 -118.94 -0.29 -10.85 16 5 C -0.29 -7.52 7.46 -15.04 -0.11 -7.63 16 6 H 0.12 2.94 5.96 -52.49 -0.31 2.63 16 7 C 0.04 1.02 5.35 -17.44 -0.09 0.92 16 8 N -0.88 -22.81 10.99 55.51 0.61 -22.20 16 9 Si 0.92 19.77 29.56 -169.99 -5.02 14.74 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 11 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.51 13.07 7.55 -12.23 -0.09 12.98 16 14 O -0.60 -15.94 15.94 5.31 0.08 -15.86 16 15 C 0.14 3.15 6.67 -82.96 -0.55 2.59 16 16 C -0.12 -2.31 9.54 -39.42 -0.38 -2.69 16 17 C -0.08 -1.30 9.88 -39.25 -0.39 -1.69 16 18 C -0.10 -1.65 5.75 -106.71 -0.61 -2.27 16 19 C -0.10 -1.33 9.77 -39.52 -0.39 -1.72 16 20 C -0.12 -1.46 9.96 -39.89 -0.40 -1.85 16 21 C -0.12 -1.56 9.94 -39.94 -0.40 -1.96 16 22 C -0.08 -1.34 9.99 -39.41 -0.39 -1.73 16 23 C 0.11 2.19 6.61 -84.85 -0.56 1.63 16 24 N -0.39 -8.79 6.28 -7.55 -0.05 -8.84 16 25 H 0.21 3.16 7.80 -54.09 -0.42 2.74 16 26 H 0.14 3.62 5.52 -51.93 -0.29 3.34 16 27 H 0.08 2.03 7.53 -51.93 -0.39 1.64 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.14 2.51 7.61 -52.49 -0.40 2.11 16 30 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -30.10 306.26 -7.45 -37.55 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.06 Total: 8.02 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -4.34 Total: -7.19 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.27 Total: -41.88 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.08 Total: -15.86 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.10 -7.45 -37.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381662099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.162 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds