Wall clock time and date at job start Tue Mar 31 2020 02:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46843 * 95.07139 * 3 2 1 5 5 C 1.36690 * 119.99872 * 264.40422 * 4 3 2 6 6 H 1.08000 * 119.99954 * 131.94586 * 5 4 3 7 7 C 1.39171 * 120.00278 * 311.94337 * 5 4 3 8 8 N 1.31283 * 119.99861 * 3.20364 * 7 5 4 9 9 Si 1.86796 * 120.00344 * 183.19750 * 7 5 4 10 10 H 1.48501 * 109.46689 * 60.00002 * 9 7 5 11 11 H 1.48494 * 109.47531 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47254 * 300.00561 * 9 7 5 13 13 C 1.34776 * 119.99862 * 84.41005 * 4 3 2 14 14 O 1.21563 * 120.00281 * 4.83635 * 13 4 3 15 15 C 1.48067 * 119.99501 * 184.84059 * 13 4 3 16 16 C 1.40383 * 119.24684 * 174.22437 * 15 13 4 17 17 C 1.36444 * 119.81200 * 179.78156 * 16 15 13 18 18 C 1.40819 * 118.26153 * 0.45503 * 17 16 15 19 19 C 1.40381 * 121.26112 * 179.82332 * 18 17 16 20 20 C 1.36164 * 119.65549 * 179.74134 * 19 18 17 21 21 C 1.39418 * 120.90916 * 0.02562 * 20 19 18 22 22 C 1.36007 * 121.07726 * 359.97438 * 21 20 19 23 23 C 1.40823 * 119.74017 * 0.02562 * 22 21 20 24 24 N 1.31984 * 119.25548 * 354.24088 * 15 13 4 25 25 H 4.40637 * 5.51469 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47348 * 335.06965 * 3 2 1 27 27 H 1.09001 * 109.46778 * 215.06755 * 3 2 1 28 28 H 0.96999 * 120.00169 * 179.97438 * 8 7 5 29 29 H 1.07995 * 120.09600 * 0.04070 * 16 15 13 30 30 H 1.07999 * 120.86996 * 180.02562 * 17 16 15 31 31 H 1.08002 * 120.17547 * 359.74051 * 19 18 17 32 32 H 1.07999 * 119.54425 * 180.02562 * 20 19 18 33 33 H 1.08002 * 119.45917 * 179.97438 * 21 20 19 34 34 H 1.07999 * 120.13012 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.1230 -1.3759 5 6 3.4714 -0.9968 -2.0835 6 1 3.1034 -1.1307 -3.0900 7 6 4.2889 -1.9645 -1.5071 8 7 4.6849 -1.8325 -0.2624 9 14 4.8226 -3.4511 -2.5043 10 1 5.5859 -2.9999 -3.6955 11 1 5.6821 -4.3261 -1.6673 12 1 3.6235 -4.2094 -2.9429 13 6 3.2511 1.3397 -1.9438 14 8 3.0360 2.3400 -1.2875 15 6 3.6415 1.4578 -3.3672 16 6 3.6401 2.7227 -3.9761 17 6 4.0021 2.8454 -5.2859 18 6 4.3596 1.6800 -5.9908 19 6 4.7387 1.7330 -7.3414 20 6 5.0832 0.5864 -7.9901 21 6 5.0644 -0.6423 -7.3314 22 6 4.7026 -0.7322 -6.0235 23 6 4.3394 0.4309 -5.3175 24 7 3.9825 0.3715 -4.0347 25 1 -1.0500 0.0002 0.0000 26 1 3.0099 -0.9311 0.4332 27 1 3.0090 0.8420 0.5905 28 1 5.2543 -2.5071 0.1395 29 1 3.3574 3.5967 -3.4083 30 1 4.0076 3.8102 -5.7712 31 1 4.7571 2.6783 -7.8634 32 1 5.3750 0.6293 -9.0290 33 1 5.3417 -1.5372 -7.8687 34 1 4.6938 -1.6919 -5.5282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381662099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:18 Heat of formation + Delta-G solvation = 82.597267 kcal Electronic energy + Delta-G solvation = -20927.590742 eV Core-core repulsion = 17792.292523 eV Total energy + Delta-G solvation = -3135.298220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.85153 -40.34894 -37.73665 -37.04383 -34.50041 -34.22264 -33.15128 -31.53559 -30.87620 -28.55629 -26.95050 -25.36308 -24.37781 -22.94720 -21.66969 -20.14312 -19.06220 -18.74687 -18.17729 -17.46570 -16.83408 -16.56096 -16.05428 -15.90773 -15.42293 -15.22311 -15.16383 -14.75507 -14.26196 -14.09090 -13.94622 -13.86884 -13.32451 -13.07762 -12.72218 -12.49426 -12.43173 -12.27600 -12.12130 -11.52511 -11.46143 -11.22259 -10.93690 -10.82836 -10.07944 -9.71615 -9.37672 -9.14834 -8.28120 -6.07963 -0.62481 -0.20228 1.09276 1.41700 1.42672 1.52508 1.59628 1.77108 1.98246 2.33144 2.45630 2.84673 3.06886 3.26414 3.45034 3.72337 3.73520 3.92303 3.99064 4.13975 4.29327 4.34463 4.50516 4.58900 4.68893 4.89568 5.05841 5.12838 5.15376 5.17387 5.19224 5.47651 5.53005 5.58761 5.70113 5.94567 5.99992 6.49973 6.74229 6.93479 7.14230 7.41477 7.84191 8.74805 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.007537 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.552330 B = 3714.156683 C = 5085.836632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.224 4.224 3 C 0.204 3.796 4 N -0.421 5.421 5 C -0.303 4.303 6 H 0.110 0.890 7 C -0.003 4.003 8 N -0.909 5.909 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.498 3.502 14 O -0.622 6.622 15 C 0.105 3.895 16 C -0.147 4.147 17 C -0.055 4.055 18 C -0.110 4.110 19 C -0.096 4.096 20 C -0.108 4.108 21 C -0.095 4.095 22 C -0.117 4.117 23 C 0.082 3.918 24 N -0.426 5.426 25 H 0.258 0.742 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.273 0.727 29 H 0.143 0.857 30 H 0.187 0.813 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 2.788 -15.983 16.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.225 4.225 3 C 0.082 3.918 4 N -0.136 5.136 5 C -0.432 4.432 6 H 0.128 0.872 7 C -0.204 4.204 8 N -0.548 5.548 9 Si 0.806 3.194 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.288 3.712 14 O -0.510 6.510 15 C -0.047 4.047 16 C -0.168 4.168 17 C -0.080 4.080 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.115 4.115 22 C -0.136 4.136 23 C -0.041 4.041 24 N -0.137 5.137 25 H 0.275 0.725 26 H 0.145 0.855 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.204 0.796 31 H 0.185 0.815 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.303 2.269 -15.119 15.291 hybrid contribution 0.148 -0.067 0.318 0.357 sum 0.451 2.202 -14.801 14.971 Atomic orbital electron populations 1.25654 0.96416 1.01600 0.98601 1.24393 0.95930 1.00278 1.01909 1.18535 0.83165 1.04185 0.85894 1.43522 1.52841 1.05390 1.11843 1.20094 1.27409 0.96522 0.99210 0.87249 1.26390 0.95091 1.02272 0.96628 1.69687 1.34775 1.36861 1.13460 0.85161 0.78726 0.76977 0.78569 1.18426 1.20771 1.18874 1.18812 0.81480 0.83571 0.87346 1.90565 1.58495 1.37447 1.64490 1.21267 0.98668 0.90805 0.93974 1.21802 1.00975 0.97190 0.96828 1.21775 0.94313 0.99472 0.92433 1.19345 1.01398 0.93443 0.97009 1.21380 0.97704 1.01099 0.91202 1.21408 0.98037 0.91334 1.01783 1.21286 0.97068 1.00157 0.92951 1.21039 1.00278 0.96644 0.95615 1.19770 0.99172 0.94681 0.90490 1.68974 1.07928 1.29978 1.06842 0.72544 0.85512 0.91872 0.91721 0.83934 0.79627 0.81521 0.81412 0.82454 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.11 19.25 74.32 1.43 -6.68 16 2 C -0.22 -10.87 13.62 31.13 0.42 -10.45 16 3 C 0.20 10.98 5.36 84.57 0.45 11.44 16 4 N -0.42 -23.60 2.47 -648.49 -1.60 -25.21 16 5 C -0.30 -16.70 7.46 84.16 0.63 -16.07 16 6 H 0.11 6.01 5.96 -2.91 -0.02 6.00 16 7 C 0.00 -0.17 5.35 85.00 0.45 0.28 16 8 N -0.91 -50.49 10.99 21.70 0.24 -50.25 16 9 Si 0.98 42.11 29.56 68.60 2.03 44.14 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 13 C 0.50 27.45 7.55 86.85 0.66 28.11 16 14 O -0.62 -35.85 15.94 -3.91 -0.06 -35.91 16 15 C 0.11 5.02 6.67 42.25 0.28 5.30 16 16 C -0.15 -5.58 9.54 22.37 0.21 -5.37 16 17 C -0.05 -1.55 9.88 22.48 0.22 -1.33 16 18 C -0.11 -3.27 5.75 -21.22 -0.12 -3.39 16 19 C -0.10 -1.90 9.77 22.31 0.22 -1.69 16 20 C -0.11 -1.88 9.96 22.07 0.22 -1.66 16 21 C -0.10 -2.10 9.94 22.04 0.22 -1.88 16 22 C -0.12 -3.79 9.99 22.38 0.22 -3.57 16 23 C 0.08 3.12 6.61 40.47 0.27 3.39 16 24 N -0.43 -19.83 6.28 -177.81 -1.12 -20.95 16 25 H 0.26 6.99 7.80 -4.42 -0.03 6.95 16 26 H 0.13 7.09 5.52 -2.39 -0.01 7.08 16 27 H 0.06 3.48 7.53 -2.39 -0.02 3.46 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.14 5.21 7.61 -2.91 -0.02 5.19 16 30 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -74.08 306.26 6.40 -67.68 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.13 Total: 24.07 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.79 Total: -3.57 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -2.48 Total: -96.41 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.06 Total: -35.91 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -74.08 6.40 -67.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381662099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.276 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds