Wall clock time and date at job start Tue Mar 31 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46709 * 224.65950 * 3 2 1 5 5 C 1.36770 * 119.99857 * 96.81692 * 4 3 2 6 6 H 1.08002 * 120.00370 * 157.24318 * 5 4 3 7 7 C 1.39111 * 119.99978 * 337.24306 * 5 4 3 8 8 N 1.31327 * 119.99898 * 355.39300 * 7 5 4 9 9 Si 1.86799 * 119.99930 * 175.39273 * 7 5 4 10 10 H 1.48495 * 109.47399 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47176 * 120.00237 * 9 7 5 12 12 H 1.48506 * 109.46989 * 240.00222 * 9 7 5 13 13 C 1.34774 * 119.99982 * 276.81136 * 4 3 2 14 14 O 1.21638 * 119.99653 * 184.11573 * 13 4 3 15 15 C 1.47381 * 120.00071 * 4.11762 * 13 4 3 16 16 C 1.38976 * 120.71302 * 305.10334 * 15 13 4 17 17 C 1.38834 * 120.45522 * 179.71720 * 16 15 13 18 18 C 1.36079 * 121.90743 * 0.30727 * 17 16 15 19 19 C 1.40640 * 120.75468 * 359.97438 * 18 17 16 20 20 N 1.33677 * 121.10903 * 180.02562 * 19 18 17 21 21 C 1.31091 * 121.30902 * 180.02562 * 20 19 18 22 22 C 1.39313 * 121.76286 * 359.96572 * 21 20 19 23 23 C 1.36752 * 119.85055 * 0.02562 * 22 21 20 24 24 C 1.40307 * 118.09690 * 0.02562 * 23 22 21 25 25 H 4.40639 * 5.51419 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46665 * 104.66298 * 3 2 1 27 27 H 1.08997 * 109.46865 * 344.65935 * 3 2 1 28 28 H 0.96998 * 119.99847 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.77199 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.04498 * 180.28807 * 17 16 15 31 31 H 1.07996 * 119.62175 * 179.97438 * 18 17 16 32 32 H 1.07997 * 119.12097 * 179.97438 * 21 20 19 33 33 H 1.08007 * 120.07396 * 179.97438 * 22 21 20 34 34 H 1.07999 * 120.95442 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9834 0.9709 5 6 3.4945 0.5821 2.2277 6 1 4.1759 1.1830 2.8117 7 6 2.9836 -0.6000 2.7538 8 7 2.0862 -1.2839 2.0818 9 14 3.5739 -1.2144 4.4162 10 1 4.5800 -0.2697 4.9643 11 1 2.4213 -1.3062 5.3478 12 1 4.1904 -2.5561 4.2576 13 6 3.2273 2.2828 0.6255 14 8 3.7022 3.0866 1.4053 15 6 2.7542 2.7297 -0.6968 16 6 3.2325 2.1373 -1.8593 17 6 2.7788 2.5585 -3.1019 18 6 1.8650 3.5583 -3.2329 19 6 1.3417 4.2072 -2.1002 20 7 0.4434 5.1898 -2.2206 21 6 -0.0466 5.7977 -1.1675 22 6 0.3411 5.4522 0.1252 23 6 1.2567 4.4548 0.3176 24 6 1.7780 3.8091 -0.8137 25 1 -1.0501 -0.0001 -0.0004 26 1 3.0092 0.2610 -0.9942 27 1 3.0098 -0.9902 0.2719 28 1 1.7302 -2.1084 2.4485 29 1 3.9592 1.3408 -1.7955 30 1 3.1623 2.0790 -3.9904 31 1 1.5379 3.8569 -4.2179 32 1 -0.7703 6.5873 -1.3057 33 1 -0.0799 5.9715 0.9736 34 1 1.5697 4.1723 1.3119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387607983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:23 Heat of formation + Delta-G solvation = 101.010826 kcal Electronic energy + Delta-G solvation = -21172.312431 eV Core-core repulsion = 18037.812684 eV Total energy + Delta-G solvation = -3134.499748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.02 seconds Orbital eigenvalues (eV) -40.47512 -38.69787 -36.41859 -35.32315 -32.97805 -32.16843 -31.34133 -30.26617 -29.73917 -26.55566 -25.24890 -23.95080 -23.20412 -22.39723 -19.44257 -18.08249 -17.94922 -17.08436 -16.60961 -16.33573 -15.73812 -14.78061 -14.53583 -14.35954 -14.08291 -13.91140 -13.62179 -13.17051 -12.99483 -12.70923 -12.36676 -12.23571 -11.60313 -11.55963 -11.28783 -11.15479 -10.94066 -10.61845 -10.44607 -10.14638 -9.54700 -9.46623 -9.32624 -8.90125 -8.58304 -8.50220 -8.02757 -7.80993 -6.45429 -4.05961 0.59519 1.10039 2.16533 3.02199 3.13357 3.16800 3.22771 3.57618 3.85226 4.02301 4.10889 4.38903 4.48471 4.66506 4.93879 5.02052 5.05292 5.13433 5.26379 5.34926 5.45910 5.47797 5.61740 5.77259 6.10869 6.17285 6.23350 6.29281 6.37031 6.60684 6.67129 6.77998 6.84662 7.03098 7.07402 7.38346 7.89840 8.11478 8.27011 8.78983 8.94701 9.15487 9.71139 10.51642 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.005928 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.504506 B = 4721.870960 C = 4998.684889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.106 4.106 3 C 0.216 3.784 4 N -0.422 5.422 5 C -0.306 4.306 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.932 3.068 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.480 3.520 14 O -0.577 6.577 15 C -0.053 4.053 16 C -0.117 4.117 17 C -0.092 4.092 18 C -0.105 4.105 19 C 0.130 3.870 20 N -0.483 5.483 21 C 0.126 3.874 22 C -0.190 4.190 23 C -0.032 4.032 24 C -0.076 4.076 25 H 0.198 0.802 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.271 0.729 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 4.420 -7.720 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.107 4.107 3 C 0.093 3.907 4 N -0.139 5.139 5 C -0.434 4.434 6 H 0.125 0.875 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.758 3.242 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.269 3.731 14 O -0.462 6.462 15 C -0.057 4.057 16 C -0.136 4.136 17 C -0.112 4.112 18 C -0.124 4.124 19 C 0.009 3.991 20 N -0.192 5.192 21 C -0.046 4.046 22 C -0.210 4.210 23 C -0.058 4.058 24 C -0.078 4.078 25 H 0.215 0.785 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.461 4.761 -8.158 9.761 hybrid contribution -0.018 -0.788 1.734 1.904 sum -2.480 3.973 -6.425 7.951 Atomic orbital electron populations 1.24257 0.95393 1.03982 1.04953 1.23113 0.94271 0.97170 0.96174 1.18827 0.84493 0.96424 0.90929 1.43621 1.53970 1.04003 1.12267 1.19823 1.25514 1.06613 0.91441 0.87522 1.25482 0.95173 0.96974 0.99744 1.69939 1.26281 1.16117 1.37877 0.85760 0.78710 0.78610 0.81095 1.19047 1.20595 1.20467 1.17799 0.85826 0.82852 0.86623 1.90651 1.49806 1.52689 1.53039 1.21361 0.95185 0.94259 0.94907 1.21408 1.00681 0.99962 0.91504 1.20657 0.96622 0.96449 0.97424 1.20624 0.97828 0.96601 0.97346 1.18732 0.94476 0.93958 0.91946 1.68008 1.09910 1.07745 1.33487 1.22840 0.96607 0.96976 0.88132 1.21868 1.00351 0.99990 0.98773 1.21654 0.92206 0.92350 0.99607 1.19559 0.97570 0.96764 0.93945 0.78531 0.91321 0.85798 0.91768 0.84734 0.85324 0.85153 0.82780 0.84763 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.68 19.25 29.55 0.57 -5.12 16 2 C -0.11 -2.39 11.27 -37.12 -0.42 -2.81 16 3 C 0.22 4.73 4.86 -6.82 -0.03 4.70 16 4 N -0.42 -10.43 2.60 -119.18 -0.31 -10.73 16 5 C -0.31 -8.08 9.33 -15.03 -0.14 -8.22 16 6 H 0.11 2.93 7.35 -52.49 -0.39 2.55 16 7 C 0.03 0.77 5.22 -17.44 -0.09 0.68 16 8 N -0.86 -21.70 8.88 55.50 0.49 -21.21 16 9 Si 0.93 19.79 29.56 -169.99 -5.02 14.77 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.48 11.66 6.43 -12.54 -0.08 11.58 16 14 O -0.58 -15.65 15.62 5.24 0.08 -15.56 16 15 C -0.05 -1.08 4.99 -102.79 -0.51 -1.60 16 16 C -0.12 -1.98 7.85 -39.09 -0.31 -2.28 16 17 C -0.09 -1.30 9.87 -40.14 -0.40 -1.70 16 18 C -0.10 -1.60 9.93 -39.45 -0.39 -1.99 16 19 C 0.13 2.33 6.60 -84.89 -0.56 1.77 16 20 N -0.48 -8.07 10.35 -11.00 -0.11 -8.18 16 21 C 0.13 1.80 11.14 -17.47 -0.19 1.61 16 22 C -0.19 -2.85 10.04 -39.72 -0.40 -3.25 16 23 C -0.03 -0.61 9.40 -39.34 -0.37 -0.98 16 24 C -0.08 -1.49 5.90 -104.75 -0.62 -2.11 16 25 H 0.20 3.48 7.80 -54.08 -0.42 3.06 16 26 H 0.07 1.29 4.18 -51.93 -0.22 1.07 16 27 H 0.12 2.85 6.21 -51.93 -0.32 2.53 16 28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.14 2.06 6.63 -52.48 -0.35 1.71 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.15 3.01 6.70 -52.49 -0.35 2.66 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -30.99 299.82 -7.17 -38.16 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -2.87 Total: 7.97 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.94 Total: -9.73 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.07 Total: -40.13 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.56 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.99 -7.17 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387607983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.174 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.02 seconds